Wall clock time and date at job start Wed Apr 1 2020 05:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47688 * 2 1 4 4 N 1.46499 * 109.46989 * 120.00535 * 2 1 3 5 5 C 1.36939 * 119.99459 * 274.99629 * 4 2 1 6 6 H 1.08002 * 120.00166 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99813 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00423 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00051 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47321 * 59.99596 * 9 7 5 11 11 H 1.48496 * 109.47322 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46739 * 299.99757 * 9 7 5 13 13 C 1.52995 * 109.47065 * 240.00020 * 2 1 3 14 14 H 1.09000 * 109.50126 * 184.94111 * 13 2 1 15 15 C 1.53046 * 109.50139 * 305.00334 * 13 2 1 16 16 C 1.53040 * 109.54022 * 181.35211 * 15 13 2 17 17 C 1.53193 * 109.30943 * 298.62950 * 16 15 13 18 18 N 1.46920 * 108.77389 * 54.63814 * 17 16 15 19 19 C 1.34780 * 120.63110 * 126.36407 * 18 17 16 20 20 O 1.21280 * 120.00423 * 179.97438 * 19 18 17 21 21 C 1.50701 * 119.99795 * 0.02562 * 19 18 17 22 22 C 1.52997 * 109.47212 * 179.97438 * 21 19 18 23 23 C 1.52992 * 109.47482 * 179.97438 * 22 21 19 24 24 S 1.81400 * 109.47583 * 179.97438 * 23 22 21 25 25 N 1.65600 * 104.45288 * 180.02562 * 24 23 22 26 26 O 1.42098 * 110.54210 * 291.62608 * 24 23 22 27 27 O 1.42102 * 110.53978 * 68.37524 * 24 23 22 28 28 C 1.46928 * 118.74133 * 306.64033 * 18 17 16 29 29 H 1.09001 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46962 * 299.99957 * 1 2 3 31 31 H 1.08997 * 109.47025 * 59.99821 * 1 2 3 32 32 H 0.96995 * 120.01031 * 94.99864 * 4 2 1 33 33 H 0.96993 * 120.00253 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46057 * 61.32699 * 15 13 2 35 35 H 1.09007 * 109.45420 * 301.37137 * 15 13 2 36 36 H 1.09007 * 109.49325 * 178.68049 * 16 15 13 37 37 H 1.09003 * 109.52615 * 58.59967 * 16 15 13 38 38 H 1.08998 * 109.58758 * 294.85382 * 17 16 15 39 39 H 1.09001 * 109.58370 * 174.42328 * 17 16 15 40 40 H 1.09002 * 109.47060 * 299.99722 * 21 19 18 41 41 H 1.09001 * 109.47380 * 59.99809 * 21 19 18 42 42 H 1.09002 * 109.47153 * 299.99998 * 22 21 19 43 43 H 1.08998 * 109.47533 * 59.99628 * 22 21 19 44 44 H 1.09002 * 109.47103 * 300.00247 * 23 22 21 45 45 H 1.09001 * 109.47066 * 60.00169 * 23 22 21 46 46 H 0.96994 * 120.00169 * 150.00217 * 25 24 23 47 47 H 0.97006 * 119.99799 * 329.99838 * 25 24 23 48 48 H 1.09003 * 109.58862 * 173.14114 * 28 18 17 49 49 H 1.08997 * 109.58643 * 293.57176 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8919 1.0403 2.4243 7 6 2.6123 -0.6619 3.5090 8 7 2.9262 -1.9387 3.4497 9 14 2.7900 0.2698 5.1183 10 1 1.4673 0.8057 5.5288 11 1 3.3002 -0.6482 6.1680 12 1 3.7446 1.3929 4.9371 13 6 2.0400 -0.7212 -1.2492 14 1 3.1264 -0.7988 -1.2066 15 6 1.4300 -2.1234 -1.3144 16 6 1.9657 -2.8578 -2.5456 17 6 1.5570 -2.0937 -3.8089 18 7 2.0152 -0.7029 -3.6892 19 6 2.7728 -0.1441 -4.6537 20 8 3.1443 1.0052 -4.5435 21 6 3.1573 -0.9469 -5.8698 22 6 4.0106 -0.0841 -6.8016 23 6 4.4015 -0.8992 -8.0358 24 16 5.4127 0.1239 -9.1410 25 7 5.7609 -0.8689 -10.4198 26 8 4.6315 1.1658 -9.7095 27 8 6.6773 0.3943 -8.5520 28 6 1.6369 0.0653 -2.4952 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.2490 -1.6318 1.1526 33 1 3.2502 -2.3957 4.2415 34 1 0.3450 -2.0446 -1.3820 35 1 1.6984 -2.6782 -0.4153 36 1 1.5490 -3.8646 -2.5785 37 1 3.0528 -2.9157 -2.4910 38 1 0.4722 -2.1134 -3.9130 39 1 2.0185 -2.5567 -4.6812 40 1 3.7278 -1.8229 -5.5613 41 1 2.2566 -1.2660 -6.3942 42 1 3.4398 0.7918 -7.1100 43 1 4.9113 0.2355 -6.2775 44 1 4.9725 -1.7749 -7.7270 45 1 3.5010 -1.2191 -8.5601 46 1 5.8950 -0.4924 -11.3036 47 1 5.8310 -1.8270 -10.2850 48 1 2.1510 1.0264 -2.5010 49 1 0.5587 0.2252 -2.4901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496452288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:15 Heat of formation + Delta-G solvation = -146.046883 kcal Electronic energy + Delta-G solvation = -28819.469844 eV Core-core repulsion = 24713.900853 eV Total energy + Delta-G solvation = -4105.568991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.36154 -39.31988 -38.06309 -36.97202 -36.92253 -35.71196 -34.59524 -33.97403 -33.05419 -31.82890 -29.91454 -28.97278 -26.42838 -26.14978 -24.48658 -23.33926 -22.62832 -20.38638 -20.31772 -19.76779 -19.28799 -18.56525 -18.23362 -17.89718 -17.31056 -17.04395 -16.73642 -16.46685 -16.08869 -15.86119 -15.63627 -15.42038 -15.21031 -15.05946 -14.44229 -14.19322 -14.09661 -13.77545 -13.72993 -13.37755 -13.24625 -13.14607 -13.10040 -13.02747 -12.99907 -12.92385 -12.80877 -12.48671 -12.41979 -12.16842 -12.00317 -11.91562 -11.76532 -11.68619 -11.59873 -11.46521 -11.17755 -11.12060 -10.89894 -10.73110 -9.59058 -9.00131 -7.94714 -5.21742 -0.68463 1.45052 1.47709 1.53566 1.64182 1.97469 2.09033 2.55492 2.79486 3.37492 3.38575 3.44104 3.76036 3.81831 3.83609 3.90386 3.93305 4.03192 4.10267 4.30707 4.35852 4.40372 4.43861 4.55510 4.60892 4.64329 4.69539 4.72279 4.79553 4.88641 4.92634 4.94777 5.07315 5.09968 5.12455 5.15427 5.29137 5.33322 5.43498 5.45986 5.53012 5.57233 5.68538 6.28420 6.44054 6.48001 7.19584 7.34646 8.12070 8.35869 9.28496 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020212 B = 0.001866 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.987093 B =15004.235124 C =15432.150057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.171 3.829 3 H 0.028 0.972 4 N -0.733 5.733 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.076 4.076 8 N -0.968 5.968 9 Si 0.969 3.031 10 H -0.278 1.278 11 H -0.294 1.294 12 H -0.283 1.283 13 C -0.090 4.090 14 H 0.041 0.959 15 C -0.111 4.111 16 C -0.131 4.131 17 C 0.104 3.896 18 N -0.609 5.609 19 C 0.498 3.502 20 O -0.596 6.596 21 C -0.123 4.123 22 C -0.113 4.113 23 C -0.594 4.594 24 S 2.616 3.384 25 N -1.236 6.236 26 O -1.010 7.010 27 O -1.015 7.015 28 C 0.123 3.877 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.375 0.625 33 H 0.250 0.750 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.174 0.826 45 H 0.178 0.822 46 H 0.424 0.576 47 H 0.429 0.571 48 H 0.062 0.938 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 -8.309 -31.504 32.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.062 3.938 3 H 0.046 0.954 4 N -0.375 5.375 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.268 4.268 8 N -0.619 5.619 9 Si 0.799 3.201 10 H -0.204 1.204 11 H -0.220 1.220 12 H -0.209 1.209 13 C -0.110 4.110 14 H 0.060 0.940 15 C -0.149 4.149 16 C -0.169 4.169 17 C -0.017 4.017 18 N -0.341 5.341 19 C 0.288 3.712 20 O -0.478 6.478 21 C -0.163 4.163 22 C -0.153 4.153 23 C -0.727 4.727 24 S 2.712 3.288 25 N -0.913 5.913 26 O -1.000 7.000 27 O -1.004 7.004 28 C 0.000 4.000 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.208 0.792 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.192 0.808 45 H 0.196 0.804 46 H 0.255 0.745 47 H 0.259 0.741 48 H 0.081 0.919 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.184 -6.522 -31.120 31.871 hybrid contribution 0.355 -0.274 1.570 1.633 sum -1.828 -6.795 -29.550 30.376 Atomic orbital electron populations 1.22368 0.97094 1.01487 1.00458 1.20354 0.93348 0.94290 0.85814 0.95373 1.42588 1.78520 1.10381 1.05960 1.19563 1.34910 0.94055 0.88566 0.91237 1.25488 1.03090 0.96955 1.01258 1.69787 1.52641 1.10038 1.29411 0.85273 0.77884 0.77304 0.79674 1.20434 1.22022 1.20911 1.21457 0.99052 0.96811 0.93667 0.94004 1.21552 1.00917 0.94046 0.98374 1.21932 1.01088 1.00043 0.93838 1.22123 1.01457 0.78750 0.99339 1.48289 1.51463 1.14860 1.19461 1.21603 0.76808 0.87348 0.85432 1.90707 1.56141 1.20794 1.80125 1.21748 1.03557 0.99041 0.92004 1.21107 1.01390 0.98451 0.94318 1.30244 1.17428 1.14559 1.10482 1.04271 0.74802 0.74751 0.74995 1.52802 1.90821 1.22154 1.25543 1.93557 1.72894 1.56439 1.77073 1.93585 1.43143 1.84275 1.79410 1.21414 1.00707 0.94581 0.83327 0.92499 0.95040 0.91080 0.79205 0.94083 0.90315 0.93901 0.88119 0.92705 0.89084 0.85809 0.85221 0.84291 0.90914 0.91622 0.80806 0.80379 0.74502 0.74110 0.91897 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 8.76 71.98 0.63 -4.62 16 2 C 0.17 6.78 2.67 44.99 0.12 6.90 16 3 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 4 N -0.73 -37.12 5.06 -322.95 -1.63 -38.75 16 5 C -0.24 -13.53 9.93 84.03 0.83 -12.70 16 6 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 7 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 8 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 9 Si 0.97 47.08 29.55 68.60 2.03 49.11 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 12 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 13 C -0.09 -2.89 2.26 -10.86 -0.02 -2.91 16 14 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 15 C -0.11 -2.97 4.52 30.62 0.14 -2.83 16 16 C -0.13 -2.28 6.08 30.67 0.19 -2.10 16 17 C 0.10 1.27 6.34 86.36 0.55 1.81 16 18 N -0.61 -12.81 2.98 -819.74 -2.44 -15.25 16 19 C 0.50 11.32 7.70 87.66 0.67 12.00 16 20 O -0.60 -20.11 15.40 -3.03 -0.05 -20.16 16 21 C -0.12 -1.25 4.05 29.85 0.12 -1.13 16 22 C -0.11 -1.51 4.51 30.59 0.14 -1.37 16 23 C -0.59 -2.03 6.17 71.98 0.44 -1.59 16 24 S 2.62 31.98 5.97 -56.49 -0.34 31.64 16 25 N -1.24 -4.32 9.36 37.02 0.35 -3.97 16 26 O -1.01 -21.67 18.10 -127.65 -2.31 -23.98 16 27 O -1.02 -23.24 18.10 -127.65 -2.31 -25.55 16 28 C 0.12 3.37 5.56 86.22 0.48 3.85 16 29 H 0.06 1.86 6.38 -2.39 -0.02 1.84 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.92 6.46 -2.39 -0.02 1.90 16 32 H 0.37 20.05 6.36 -92.71 -0.59 19.46 16 33 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 34 H 0.08 1.89 6.43 -2.39 -0.02 1.87 16 35 H 0.04 1.43 6.74 -2.38 -0.02 1.42 16 36 H 0.10 1.27 8.14 -2.38 -0.02 1.26 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.12 0.50 5.93 -2.39 -0.01 0.48 16 40 H 0.13 0.59 7.69 -2.39 -0.02 0.57 16 41 H 0.14 0.33 7.94 -2.39 -0.02 0.31 16 42 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 43 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 44 H 0.17 -0.62 8.14 -2.39 -0.02 -0.64 16 45 H 0.18 -0.71 8.14 -2.39 -0.02 -0.73 16 46 H 0.42 1.24 8.96 -96.75 -0.87 0.37 16 47 H 0.43 -1.58 8.96 -96.74 -0.87 -2.45 16 48 H 0.06 2.08 7.01 -2.39 -0.02 2.07 16 49 H 0.09 2.07 6.33 -2.39 -0.02 2.06 16 Total: -1.00 -94.27 395.57 -3.00 -97.27 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -1.34 Total: 17.39 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 4.76 Total: -8.61 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -3.44 Total: -117.11 kcal Atomic # 8 Polarization: -65.02 SS G_CDS: -4.67 Total: -69.69 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Atomic # 16 Polarization: 31.98 SS G_CDS: -0.34 Total: 31.64 kcal Total: -94.27 -3.00 -97.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496452288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.779 kcal (2) G-P(sol) polarization free energy of solvation -94.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds