Wall clock time and date at job start Wed Apr 1 2020 05:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65600 * 119.99944 * 2 1 4 4 O 1.42102 * 104.27514 * 308.93328 * 3 2 1 5 5 O 1.42096 * 104.27986 * 181.07481 * 3 2 1 6 6 C 1.81402 * 104.45002 * 65.00045 * 3 2 1 7 7 C 1.52997 * 109.47331 * 180.02562 * 6 3 2 8 8 C 1.50694 * 109.47445 * 180.02562 * 7 6 3 9 9 O 1.21283 * 119.99810 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00521 * 180.02562 * 8 7 6 11 11 C 1.46922 * 120.62407 * 354.35755 * 10 8 7 12 12 C 1.53193 * 108.77732 * 233.60710 * 11 10 8 13 13 C 1.53040 * 109.31206 * 305.37481 * 12 11 10 14 14 C 1.53037 * 109.54218 * 61.35758 * 13 12 11 15 15 H 1.09002 * 109.49239 * 58.62147 * 14 13 12 16 16 C 1.53002 * 109.49481 * 178.68327 * 14 13 12 17 17 C 1.46922 * 120.63428 * 174.35989 * 10 8 7 18 18 H 1.09003 * 109.58614 * 246.18090 * 17 10 8 19 19 C 1.53005 * 109.58441 * 6.60411 * 17 10 8 20 20 N 1.46498 * 109.47132 * 292.74733 * 19 17 10 21 21 C 1.36931 * 120.00229 * 185.79997 * 20 19 17 22 22 H 1.08001 * 120.00343 * 0.02562 * 21 20 19 23 23 C 1.38818 * 120.00511 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00333 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99367 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47042 * 90.00016 * 25 23 21 27 27 H 1.48502 * 109.46804 * 209.99543 * 25 23 21 28 28 H 1.48496 * 109.47097 * 329.99857 * 25 23 21 29 29 H 1.09004 * 109.46629 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46582 * 299.99366 * 1 2 3 31 31 H 1.08989 * 109.47455 * 59.99943 * 1 2 3 32 32 H 0.96996 * 120.00293 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.46803 * 59.99998 * 6 3 2 34 34 H 1.09000 * 109.47059 * 300.00542 * 6 3 2 35 35 H 1.08998 * 109.47285 * 60.00163 * 7 6 3 36 36 H 1.09005 * 109.46939 * 300.00088 * 7 6 3 37 37 H 1.09001 * 109.58406 * 113.82566 * 11 10 8 38 38 H 1.09000 * 109.71110 * 353.47242 * 11 10 8 39 39 H 1.08998 * 109.50176 * 185.41341 * 12 11 10 40 40 H 1.09002 * 109.51689 * 65.33310 * 12 11 10 41 41 H 1.08999 * 109.45434 * 301.33424 * 13 12 11 42 42 H 1.09005 * 109.44948 * 181.37849 * 13 12 11 43 43 H 1.08995 * 109.47337 * 60.00555 * 16 14 13 44 44 H 1.08998 * 109.47456 * 299.99721 * 16 14 13 45 45 H 1.09001 * 109.46480 * 180.02562 * 16 14 13 46 46 H 1.08993 * 109.47557 * 52.75307 * 19 17 10 47 47 H 1.09003 * 109.46544 * 172.75407 * 19 17 10 48 48 H 0.97001 * 120.00121 * 5.80756 * 20 19 17 49 49 H 0.97002 * 120.00284 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7187 2.1703 -1.0713 5 8 3.6606 1.0493 -0.0258 6 6 1.8764 2.1973 1.5921 7 6 2.5889 3.5459 1.7132 8 6 2.2434 4.1796 3.0360 9 8 1.5000 3.6091 3.8059 10 7 2.7596 5.3809 3.3632 11 6 3.7553 6.0283 2.4983 12 6 4.9842 6.3833 3.3412 13 6 4.5485 7.2286 4.5403 14 6 3.5821 6.4223 5.4109 15 1 4.0709 5.5072 5.7453 16 6 3.1728 7.2563 6.6265 17 6 2.3373 6.0678 4.5914 18 1 1.7979 6.9792 4.3333 19 6 1.4305 5.1456 5.4089 20 7 0.1725 4.9340 4.6887 21 6 -0.8464 4.2365 5.2806 22 1 -0.7228 3.8427 6.2786 23 6 -2.0383 4.0354 4.5980 24 7 -3.0178 3.3655 5.1672 25 14 -2.2519 4.7159 2.8714 26 1 -1.8025 3.7043 1.8816 27 1 -3.6835 5.0344 2.6385 28 1 -1.4395 5.9499 2.7217 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.9501 -0.8400 -0.0004 33 1 2.1958 1.5431 2.4032 34 1 0.7987 2.3496 1.6511 35 1 2.2691 4.1999 0.9020 36 1 3.6667 3.3939 1.6540 37 1 3.3316 6.9364 2.0696 38 1 4.0453 5.3474 1.6981 39 1 5.6906 6.9496 2.7342 40 1 5.4600 5.4685 3.6947 41 1 4.0513 8.1317 4.1863 42 1 5.4243 7.5031 5.1283 43 1 2.6831 8.1706 6.2916 44 1 4.0591 7.5106 7.2078 45 1 2.4848 6.6814 7.2465 46 1 1.9280 4.1878 5.5604 47 1 1.2229 5.6042 6.3757 48 1 0.0613 5.2878 3.7924 49 1 -3.8505 3.2247 4.6900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496470539.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:24 Heat of formation + Delta-G solvation = -56.113858 kcal Electronic energy + Delta-G solvation = -31110.052512 eV Core-core repulsion = 27008.383309 eV Total energy + Delta-G solvation = -4101.669203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.46610 -37.55596 -37.19543 -36.06820 -35.10371 -35.07493 -33.57296 -32.85508 -32.14917 -30.61873 -27.60665 -26.14954 -26.08331 -25.18807 -23.60420 -22.21071 -21.04254 -20.27406 -19.48699 -18.95913 -17.97927 -17.54580 -16.92967 -16.46404 -16.05826 -15.73385 -15.47281 -14.99526 -14.77023 -14.60891 -14.19704 -14.04817 -13.95563 -13.54313 -13.38750 -13.08360 -12.95024 -12.79925 -12.66101 -12.57016 -12.29106 -12.20172 -12.17329 -12.09650 -11.80047 -11.73452 -11.65529 -11.49691 -11.19239 -11.09359 -10.90171 -10.81173 -10.69646 -10.64248 -10.22991 -9.93463 -9.69099 -9.45857 -8.81605 -8.54859 -8.24664 -6.84131 -5.62354 -2.88359 0.16402 2.59488 3.06983 3.17092 3.40160 3.43732 3.49199 3.65223 4.16154 4.39663 4.57944 4.69724 4.70092 4.72568 4.80503 4.87469 4.90546 4.93265 5.14690 5.26033 5.37055 5.37406 5.44351 5.47319 5.59575 5.61085 5.64720 5.66756 5.67304 5.70576 5.76220 5.80449 5.82820 5.89986 5.99556 6.04790 6.16755 6.26509 6.40862 6.52280 6.77142 6.80667 7.11990 7.74294 8.13297 8.55743 8.69660 9.36761 10.10077 10.31128 11.57508 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008404 B = 0.005260 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.020035 B = 5321.974566 C = 7906.443799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -1.122 6.122 3 S 2.612 3.388 4 O -0.957 6.957 5 O -0.963 6.963 6 C -0.609 4.609 7 C -0.130 4.130 8 C 0.471 3.529 9 O -0.437 6.437 10 N -0.618 5.618 11 C 0.107 3.893 12 C -0.135 4.135 13 C -0.113 4.113 14 C -0.098 4.098 15 H 0.074 0.926 16 C -0.147 4.147 17 C 0.143 3.857 18 H 0.068 0.932 19 C 0.166 3.834 20 N -0.720 5.720 21 C -0.208 4.208 22 H 0.086 0.914 23 C -0.004 4.004 24 N -0.943 5.943 25 Si 0.880 3.120 26 H -0.288 1.288 27 H -0.294 1.294 28 H -0.283 1.283 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.417 0.583 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.045 0.955 47 H 0.029 0.971 48 H 0.356 0.644 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.767 1.589 -7.774 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.881 5.881 3 S 2.704 3.296 4 O -0.947 6.947 5 O -0.953 6.953 6 C -0.739 4.739 7 C -0.172 4.172 8 C 0.255 3.745 9 O -0.305 6.305 10 N -0.356 5.356 11 C -0.017 4.017 12 C -0.173 4.173 13 C -0.151 4.151 14 C -0.118 4.118 15 H 0.093 0.907 16 C -0.205 4.205 17 C 0.040 3.960 18 H 0.086 0.914 19 C 0.039 3.961 20 N -0.365 5.365 21 C -0.339 4.339 22 H 0.104 0.896 23 C -0.198 4.198 24 N -0.593 5.593 25 Si 0.711 3.289 26 H -0.215 1.215 27 H -0.221 1.221 28 H -0.210 1.210 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.250 0.750 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.046 0.954 48 H 0.188 0.812 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.604 1.568 -7.883 18.447 hybrid contribution -0.435 0.098 -0.776 0.895 sum 16.169 1.666 -8.660 18.418 Atomic orbital electron populations 1.21577 0.78328 1.04425 1.02534 1.55296 1.16189 1.24339 1.92275 1.04922 0.73602 0.73999 0.77040 1.93597 1.78747 1.72293 1.50093 1.93588 1.32855 1.81371 1.87500 1.30374 1.12595 1.07687 1.23241 1.21371 1.01484 0.94691 0.99669 1.20110 0.82672 0.82888 0.88870 1.91193 1.30685 1.59651 1.48930 1.47886 1.43716 1.19802 1.24237 1.21668 0.88879 0.98218 0.92935 1.21922 0.97252 1.00661 0.97470 1.21574 0.98959 0.98270 0.96263 1.21464 0.95762 0.99183 0.95420 0.90717 1.21849 1.01358 1.00024 0.97245 1.21594 0.94393 0.95977 0.84039 0.91377 1.20891 0.86498 0.95855 0.92831 1.42642 1.12233 1.65365 1.16258 1.19010 0.90733 1.24533 0.99602 0.89603 1.24545 0.96588 1.01205 0.97448 1.69693 1.05436 1.46726 1.37495 0.86611 0.76546 0.78741 0.86953 1.21469 1.22078 1.20983 0.89857 0.91495 0.91361 0.74991 0.83861 0.83863 0.88408 0.88225 0.91663 0.90124 0.90975 0.91447 0.91863 0.91834 0.92619 0.92781 0.91498 0.93736 0.95372 0.81172 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 11.03 59.85 0.66 1.44 16 2 N -1.12 -11.38 6.08 -16.63 -0.10 -11.48 16 3 S 2.61 32.15 5.46 -107.50 -0.59 31.56 16 4 O -0.96 -14.74 17.73 -57.54 -1.02 -15.76 16 5 O -0.96 -13.60 18.08 -57.54 -1.04 -14.64 16 6 C -0.61 -8.03 5.31 37.16 0.20 -7.83 16 7 C -0.13 -1.71 4.12 -27.89 -0.11 -1.82 16 8 C 0.47 7.88 6.97 -10.99 -0.08 7.80 16 9 O -0.44 -9.29 9.65 5.56 0.05 -9.23 16 10 N -0.62 -8.90 2.97 -165.23 -0.49 -9.39 16 11 C 0.11 1.09 6.32 -3.71 -0.02 1.07 16 12 C -0.13 -1.17 6.08 -26.61 -0.16 -1.33 16 13 C -0.11 -1.06 5.17 -26.69 -0.14 -1.19 16 14 C -0.10 -1.17 2.34 -90.50 -0.21 -1.38 16 15 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.15 -1.64 8.97 37.16 0.33 -1.30 16 17 C 0.14 2.20 2.41 -67.60 -0.16 2.03 16 18 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 19 C 0.17 3.32 4.77 -4.04 -0.02 3.30 16 20 N -0.72 -17.65 2.96 -59.91 -0.18 -17.83 16 21 C -0.21 -6.06 10.17 -15.06 -0.15 -6.22 16 22 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 23 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 24 N -0.94 -30.31 13.97 55.49 0.78 -29.53 16 25 Si 0.88 22.99 27.74 -169.99 -4.71 18.28 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 28 H -0.28 -7.09 6.52 56.52 0.37 -6.72 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.71 7.73 -51.93 -0.40 0.31 16 31 H 0.07 0.70 8.04 -51.93 -0.42 0.28 16 32 H 0.42 3.31 8.92 -34.47 -0.31 3.00 16 33 H 0.14 1.78 8.10 -51.92 -0.42 1.36 16 34 H 0.14 2.14 7.73 -51.92 -0.40 1.74 16 35 H 0.10 1.13 8.12 -51.93 -0.42 0.71 16 36 H 0.10 1.01 7.46 -51.93 -0.39 0.62 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.69 5.98 -51.93 -0.31 0.38 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.84 6.48 -51.93 -0.34 0.50 16 46 H 0.05 0.97 6.49 -51.93 -0.34 0.63 16 47 H 0.03 0.57 6.33 -51.93 -0.33 0.24 16 48 H 0.36 8.74 4.69 -40.82 -0.19 8.54 16 49 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -38.87 388.38 -9.50 -48.36 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.08 Total: 9.47 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 0.03 Total: -5.66 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: 0.01 Total: -68.24 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -2.01 Total: -39.63 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.71 Total: 18.28 kcal Atomic # 16 Polarization: 32.15 SS G_CDS: -0.59 Total: 31.56 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.87 -9.50 -48.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496470539.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.752 kcal (2) G-P(sol) polarization free energy of solvation -38.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds