Wall clock time and date at job start Wed Apr 1 2020 05:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65600 * 119.99944 * 2 1 4 4 O 1.42102 * 104.27514 * 308.93328 * 3 2 1 5 5 O 1.42096 * 104.27986 * 181.07481 * 3 2 1 6 6 C 1.81402 * 104.45002 * 65.00045 * 3 2 1 7 7 C 1.52997 * 109.47331 * 180.02562 * 6 3 2 8 8 C 1.50694 * 109.47445 * 180.02562 * 7 6 3 9 9 O 1.21283 * 119.99810 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00521 * 180.02562 * 8 7 6 11 11 C 1.46922 * 120.62407 * 354.35755 * 10 8 7 12 12 C 1.53193 * 108.77732 * 233.60710 * 11 10 8 13 13 C 1.53040 * 109.31206 * 305.37481 * 12 11 10 14 14 C 1.53037 * 109.54218 * 61.35758 * 13 12 11 15 15 H 1.09002 * 109.49239 * 58.62147 * 14 13 12 16 16 C 1.53002 * 109.49481 * 178.68327 * 14 13 12 17 17 C 1.46922 * 120.63428 * 174.35989 * 10 8 7 18 18 H 1.09003 * 109.58614 * 246.18090 * 17 10 8 19 19 C 1.53005 * 109.58441 * 6.60411 * 17 10 8 20 20 N 1.46498 * 109.47132 * 292.74733 * 19 17 10 21 21 C 1.36931 * 120.00229 * 185.79997 * 20 19 17 22 22 H 1.08001 * 120.00343 * 0.02562 * 21 20 19 23 23 C 1.38818 * 120.00511 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00333 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 119.99367 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47042 * 90.00016 * 25 23 21 27 27 H 1.48502 * 109.46804 * 209.99543 * 25 23 21 28 28 H 1.48496 * 109.47097 * 329.99857 * 25 23 21 29 29 H 1.09004 * 109.46629 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46582 * 299.99366 * 1 2 3 31 31 H 1.08989 * 109.47455 * 59.99943 * 1 2 3 32 32 H 0.96996 * 120.00293 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.46803 * 59.99998 * 6 3 2 34 34 H 1.09000 * 109.47059 * 300.00542 * 6 3 2 35 35 H 1.08998 * 109.47285 * 60.00163 * 7 6 3 36 36 H 1.09005 * 109.46939 * 300.00088 * 7 6 3 37 37 H 1.09001 * 109.58406 * 113.82566 * 11 10 8 38 38 H 1.09000 * 109.71110 * 353.47242 * 11 10 8 39 39 H 1.08998 * 109.50176 * 185.41341 * 12 11 10 40 40 H 1.09002 * 109.51689 * 65.33310 * 12 11 10 41 41 H 1.08999 * 109.45434 * 301.33424 * 13 12 11 42 42 H 1.09005 * 109.44948 * 181.37849 * 13 12 11 43 43 H 1.08995 * 109.47337 * 60.00555 * 16 14 13 44 44 H 1.08998 * 109.47456 * 299.99721 * 16 14 13 45 45 H 1.09001 * 109.46480 * 180.02562 * 16 14 13 46 46 H 1.08993 * 109.47557 * 52.75307 * 19 17 10 47 47 H 1.09003 * 109.46544 * 172.75407 * 19 17 10 48 48 H 0.97001 * 120.00121 * 5.80756 * 20 19 17 49 49 H 0.97002 * 120.00284 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7187 2.1703 -1.0713 5 8 3.6606 1.0493 -0.0258 6 6 1.8764 2.1973 1.5921 7 6 2.5889 3.5459 1.7132 8 6 2.2434 4.1796 3.0360 9 8 1.5000 3.6091 3.8059 10 7 2.7596 5.3809 3.3632 11 6 3.7553 6.0283 2.4983 12 6 4.9842 6.3833 3.3412 13 6 4.5485 7.2286 4.5403 14 6 3.5821 6.4223 5.4109 15 1 4.0709 5.5072 5.7453 16 6 3.1728 7.2563 6.6265 17 6 2.3373 6.0678 4.5914 18 1 1.7979 6.9792 4.3333 19 6 1.4305 5.1456 5.4089 20 7 0.1725 4.9340 4.6887 21 6 -0.8464 4.2365 5.2806 22 1 -0.7228 3.8427 6.2786 23 6 -2.0383 4.0354 4.5980 24 7 -3.0178 3.3655 5.1672 25 14 -2.2519 4.7159 2.8714 26 1 -1.8025 3.7043 1.8816 27 1 -3.6835 5.0344 2.6385 28 1 -1.4395 5.9499 2.7217 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.9501 -0.8400 -0.0004 33 1 2.1958 1.5431 2.4032 34 1 0.7987 2.3496 1.6511 35 1 2.2691 4.1999 0.9020 36 1 3.6667 3.3939 1.6540 37 1 3.3316 6.9364 2.0696 38 1 4.0453 5.3474 1.6981 39 1 5.6906 6.9496 2.7342 40 1 5.4600 5.4685 3.6947 41 1 4.0513 8.1317 4.1863 42 1 5.4243 7.5031 5.1283 43 1 2.6831 8.1706 6.2916 44 1 4.0591 7.5106 7.2078 45 1 2.4848 6.6814 7.2465 46 1 1.9280 4.1878 5.5604 47 1 1.2229 5.6042 6.3757 48 1 0.0613 5.2878 3.7924 49 1 -3.8505 3.2247 4.6900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496470539.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:24 Heat of formation + Delta-G solvation = -87.052125 kcal Electronic energy + Delta-G solvation = -31111.394096 eV Core-core repulsion = 27008.383309 eV Total energy + Delta-G solvation = -4103.010787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.68052 -38.67258 -38.28186 -37.16416 -36.71498 -35.95701 -34.90301 -34.06681 -33.56049 -32.32701 -28.96507 -27.12479 -26.91131 -26.52462 -24.99457 -23.68767 -22.35476 -21.26976 -20.49624 -20.15175 -19.63777 -18.80002 -18.11230 -17.49031 -17.18863 -16.86185 -16.69247 -16.47454 -15.94405 -15.82752 -15.58654 -15.13038 -15.03454 -14.76432 -14.65760 -14.46500 -14.19429 -13.94141 -13.85840 -13.78902 -13.52359 -13.34609 -13.31976 -13.21056 -13.14605 -12.95757 -12.81818 -12.62512 -12.50556 -12.44655 -12.16144 -11.97319 -11.91883 -11.82155 -11.66142 -11.51338 -11.11709 -10.92882 -10.56644 -9.94886 -9.56541 -8.86090 -7.95028 -5.17257 -0.84530 1.29217 1.32537 1.40307 1.65842 1.84032 2.06892 2.50194 2.64564 3.14767 3.33721 3.36999 3.57311 3.61956 3.77967 3.86216 3.95222 4.09046 4.12976 4.18427 4.23687 4.32042 4.38340 4.46054 4.54904 4.55352 4.64094 4.75892 4.77987 4.83173 4.84749 4.87760 4.93919 4.96854 5.01348 5.13503 5.24695 5.28006 5.30830 5.40341 5.54580 5.77488 5.80738 6.05867 6.27652 6.57982 7.16224 7.45376 7.94976 8.14091 9.28528 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008404 B = 0.005260 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.020035 B = 5321.974566 C = 7906.443799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -1.115 6.115 3 S 2.644 3.356 4 O -0.984 6.984 5 O -0.977 6.977 6 C -0.611 4.611 7 C -0.136 4.136 8 C 0.469 3.531 9 O -0.499 6.499 10 N -0.617 5.617 11 C 0.094 3.906 12 C -0.130 4.130 13 C -0.108 4.108 14 C -0.091 4.091 15 H 0.064 0.936 16 C -0.145 4.145 17 C 0.148 3.852 18 H 0.067 0.933 19 C 0.169 3.831 20 N -0.719 5.719 21 C -0.194 4.194 22 H 0.046 0.954 23 C -0.071 4.071 24 N -0.992 5.992 25 Si 0.945 3.055 26 H -0.276 1.276 27 H -0.297 1.297 28 H -0.264 1.264 29 H 0.110 0.890 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.428 0.572 33 H 0.144 0.856 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.134 0.866 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.042 0.958 46 H 0.024 0.976 47 H 0.021 0.979 48 H 0.357 0.643 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.642 3.162 -10.250 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.876 5.876 3 S 2.736 3.264 4 O -0.974 6.974 5 O -0.967 6.967 6 C -0.741 4.741 7 C -0.178 4.178 8 C 0.254 3.746 9 O -0.372 6.372 10 N -0.353 5.353 11 C -0.027 4.027 12 C -0.168 4.168 13 C -0.146 4.146 14 C -0.111 4.111 15 H 0.083 0.917 16 C -0.203 4.203 17 C 0.045 3.955 18 H 0.085 0.915 19 C 0.043 3.957 20 N -0.363 5.363 21 C -0.326 4.326 22 H 0.064 0.936 23 C -0.261 4.261 24 N -0.646 5.646 25 Si 0.774 3.226 26 H -0.202 1.202 27 H -0.224 1.224 28 H -0.190 1.190 29 H 0.129 0.871 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.264 0.736 33 H 0.163 0.837 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.152 0.848 37 H 0.098 0.902 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.042 0.958 47 H 0.039 0.961 48 H 0.190 0.810 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.577 3.192 -10.375 22.385 hybrid contribution -1.216 -0.443 0.088 1.297 sum 18.361 2.749 -10.287 21.225 Atomic orbital electron populations 1.21724 0.77968 1.06136 1.01901 1.55072 1.16409 1.24271 1.91894 1.03906 0.72842 0.73749 0.75922 1.93562 1.79250 1.73393 1.51206 1.93562 1.33956 1.81636 1.87555 1.30403 1.11370 1.08305 1.24006 1.21542 1.03691 0.94566 0.97966 1.20816 0.81442 0.82851 0.89455 1.91180 1.33638 1.61561 1.50788 1.48080 1.43858 1.19213 1.24179 1.22089 0.88463 0.99038 0.93121 1.21923 0.96842 1.00806 0.97231 1.21567 0.98767 0.97983 0.96267 1.21413 0.94579 0.99474 0.95648 0.91716 1.21835 1.01886 0.99646 0.96946 1.21453 0.95146 0.94338 0.84604 0.91467 1.20895 0.85632 0.95925 0.93280 1.42536 1.12627 1.64818 1.16320 1.18935 0.92009 1.23589 0.98028 0.93635 1.25266 0.96352 1.02506 1.01933 1.69880 1.06097 1.49131 1.39485 0.85537 0.76341 0.78908 0.81807 1.20185 1.22375 1.18991 0.87122 0.92613 0.91556 0.73558 0.83738 0.85887 0.86377 0.84794 0.90250 0.87947 0.87915 0.91848 0.91139 0.89921 0.92108 0.90519 0.93866 0.95833 0.96083 0.81014 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 11.03 127.77 1.41 2.71 16 2 N -1.11 -21.01 6.08 -206.54 -1.25 -22.26 16 3 S 2.64 60.84 5.46 -56.49 -0.31 60.54 16 4 O -0.98 -28.63 17.73 -127.65 -2.26 -30.90 16 5 O -0.98 -25.49 18.08 -127.65 -2.31 -27.80 16 6 C -0.61 -15.65 5.31 71.98 0.38 -15.26 16 7 C -0.14 -3.27 4.12 29.85 0.12 -3.15 16 8 C 0.47 15.22 6.97 87.65 0.61 15.83 16 9 O -0.50 -21.71 9.65 -3.04 -0.03 -21.74 16 10 N -0.62 -16.53 2.97 -795.04 -2.36 -18.89 16 11 C 0.09 1.55 6.32 86.36 0.55 2.10 16 12 C -0.13 -1.67 6.08 30.67 0.19 -1.49 16 13 C -0.11 -1.60 5.17 30.62 0.16 -1.44 16 14 C -0.09 -2.01 2.34 -10.72 -0.03 -2.03 16 15 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 16 C -0.15 -3.04 8.97 71.98 0.65 -2.40 16 17 C 0.15 4.41 2.41 44.98 0.11 4.52 16 18 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 19 C 0.17 6.98 4.77 86.38 0.41 7.40 16 20 N -0.72 -36.19 2.96 -343.45 -1.02 -37.21 16 21 C -0.19 -11.83 10.17 84.04 0.85 -10.98 16 22 H 0.05 3.08 8.06 -2.91 -0.02 3.05 16 23 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 24 N -0.99 -66.49 13.97 21.65 0.30 -66.19 16 25 Si 0.95 48.38 27.74 68.60 1.90 50.28 16 26 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 27 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 28 H -0.26 -12.53 6.52 99.48 0.65 -11.88 16 29 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.06 1.18 7.73 -2.39 -0.02 1.16 16 31 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 32 H 0.43 6.03 8.92 -96.75 -0.86 5.16 16 33 H 0.14 3.59 8.10 -2.39 -0.02 3.57 16 34 H 0.12 3.70 7.73 -2.39 -0.02 3.69 16 35 H 0.12 2.37 8.12 -2.39 -0.02 2.35 16 36 H 0.13 2.25 7.46 -2.38 -0.02 2.23 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 1.26 5.98 -2.39 -0.01 1.24 16 39 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 0.97 8.14 -2.38 -0.02 0.96 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.04 1.09 6.48 -2.39 -0.02 1.08 16 46 H 0.02 1.09 6.49 -2.39 -0.02 1.08 16 47 H 0.02 0.90 6.33 -2.39 -0.02 0.89 16 48 H 0.36 17.54 4.69 -92.71 -0.44 17.11 16 49 H 0.25 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -88.22 388.38 -1.86 -90.08 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -0.40 Total: 32.23 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 5.88 Total: -8.14 kcal Atomic # 7 Polarization: -140.22 SS G_CDS: -4.33 Total: -144.55 kcal Atomic # 8 Polarization: -75.84 SS G_CDS: -4.60 Total: -80.44 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 1.90 Total: 50.28 kcal Atomic # 16 Polarization: 60.84 SS G_CDS: -0.31 Total: 60.54 kcal Total: -88.22 -1.86 -90.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496470539.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.024 kcal (2) G-P(sol) polarization free energy of solvation -88.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds