Wall clock time and date at job start Wed Apr 1 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47349 * 2 1 4 4 N 1.46503 * 109.47360 * 240.00069 * 2 1 3 5 5 S 1.65597 * 120.00023 * 94.99701 * 4 2 1 6 6 C 1.81397 * 104.44871 * 65.00275 * 5 4 2 7 7 O 1.42102 * 104.27604 * 181.07715 * 5 4 2 8 8 O 1.42105 * 104.27815 * 308.93083 * 5 4 2 9 9 C 1.50696 * 109.47409 * 120.00115 * 2 1 3 10 10 O 1.21280 * 120.00262 * 120.00133 * 9 2 1 11 11 N 1.34775 * 120.00061 * 300.00045 * 9 2 1 12 12 C 1.46505 * 120.00313 * 175.32661 * 11 9 2 13 13 H 1.08992 * 109.47077 * 4.97582 * 12 11 9 14 14 C 1.53000 * 109.47041 * 244.97242 * 12 11 9 15 15 N 1.46495 * 109.47041 * 54.99935 * 14 12 11 16 16 C 1.36935 * 120.00015 * 179.97438 * 15 14 12 17 17 H 1.08003 * 120.00163 * 0.02562 * 16 15 14 18 18 C 1.38823 * 120.00248 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99999 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99691 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47034 * 89.99801 * 20 18 16 22 22 H 1.48496 * 109.46883 * 210.00118 * 20 18 16 23 23 H 1.48496 * 109.46949 * 329.99931 * 20 18 16 24 24 C 1.52997 * 109.46806 * 124.97348 * 12 11 9 25 25 C 1.54270 * 110.03545 * 58.32306 * 24 12 11 26 26 C 1.54968 * 104.15982 * 217.13385 * 25 24 12 27 27 C 1.54895 * 102.77682 * 37.88396 * 26 25 24 28 28 C 1.53875 * 110.03579 * 301.10117 * 24 12 11 29 29 H 1.08994 * 109.46924 * 299.99561 * 1 2 3 30 30 H 1.08998 * 109.46628 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47090 * 59.99994 * 1 2 3 32 32 H 0.96998 * 120.00353 * 275.00187 * 4 2 1 33 33 H 1.09001 * 109.47016 * 60.00520 * 6 5 4 34 34 H 1.09006 * 109.47042 * 180.02562 * 6 5 4 35 35 H 1.08993 * 109.47364 * 299.99734 * 6 5 4 36 36 H 0.97009 * 119.99752 * 355.32751 * 11 9 2 37 37 H 1.08999 * 109.46712 * 174.99823 * 14 12 11 38 38 H 1.08997 * 109.47255 * 294.99855 * 14 12 11 39 39 H 0.97002 * 120.00668 * 0.02562 * 15 14 12 40 40 H 0.96998 * 119.99694 * 180.02562 * 19 18 16 41 41 H 1.09004 * 110.01187 * 179.70761 * 24 12 11 42 42 H 1.09001 * 110.48355 * 335.77671 * 25 24 12 43 43 H 1.08999 * 110.49064 * 98.42484 * 25 24 12 44 44 H 1.09002 * 110.71690 * 279.57101 * 26 25 24 45 45 H 1.08992 * 110.76460 * 156.21723 * 26 25 24 46 46 H 1.08991 * 110.48448 * 203.40447 * 27 26 25 47 47 H 1.09005 * 110.59882 * 80.81720 * 27 26 25 48 48 H 1.08997 * 110.03475 * 238.57330 * 28 24 12 49 49 H 1.08996 * 110.03010 * 359.95239 * 28 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 2.4122 0.1772 -2.5505 6 6 3.8313 1.1873 -2.0441 7 8 2.8122 -0.8076 -3.4936 8 8 1.2751 0.9966 -2.7846 9 6 2.0324 -0.7104 1.2304 10 8 2.7297 -1.6964 1.1191 11 7 1.7068 -0.2500 2.4545 12 6 2.1086 -0.9971 3.6490 13 1 2.7322 -1.8418 3.3564 14 6 0.8621 -1.5100 4.3730 15 7 0.0440 -2.2918 3.4426 16 6 -1.1287 -2.8555 3.8694 17 1 -1.4507 -2.7234 4.8918 18 6 -1.9037 -3.5968 2.9879 19 7 -3.0311 -4.1382 3.3981 20 14 -1.3464 -3.8259 1.2198 21 1 -0.5075 -5.0472 1.1195 22 1 -2.5348 -3.9681 0.3407 23 1 -0.5539 -2.6447 0.7935 24 6 2.8993 -0.0788 4.5829 25 6 2.0426 1.1438 4.9718 26 6 3.0546 2.3165 5.0183 27 6 3.9978 2.0023 3.8305 28 6 4.1421 0.4667 3.8580 29 1 -0.3633 0.5137 0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8899 32 1 2.1111 -1.6561 -1.1950 33 1 4.6459 0.5362 -1.7269 34 1 4.1605 1.7986 -2.8844 35 1 3.5400 1.8343 -1.2167 36 1 1.2064 0.5762 2.5447 37 1 1.1619 -2.1397 5.2107 38 1 0.2832 -0.6640 4.7433 39 1 0.3333 -2.4108 2.5244 40 1 -3.5724 -4.6564 2.7823 41 1 3.1984 -0.6248 5.4777 42 1 1.2782 1.3296 4.2172 43 1 1.5858 0.9941 5.9501 44 1 3.6045 2.3142 5.9594 45 1 2.5484 3.2700 4.8678 46 1 4.9669 2.4792 3.9765 47 1 3.5518 2.3268 2.8903 48 1 5.0445 0.1861 4.4013 49 1 4.1825 0.0764 2.8411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500115310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:36 Heat of formation + Delta-G solvation = -132.971183 kcal Electronic energy + Delta-G solvation = -31012.458399 eV Core-core repulsion = 26907.456413 eV Total energy + Delta-G solvation = -4105.001986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.45693 -39.38473 -38.20998 -37.06866 -36.94483 -36.39967 -35.17678 -33.38396 -31.78183 -30.41692 -30.22808 -29.54655 -27.93681 -25.70985 -24.56518 -22.90779 -21.93766 -21.03484 -20.59209 -20.40895 -19.72293 -19.15714 -18.08982 -17.46977 -17.24206 -16.89617 -16.79038 -16.49030 -16.07053 -15.89996 -15.59574 -15.37299 -14.91931 -14.77470 -14.30422 -14.18796 -14.06259 -14.03097 -13.98940 -13.74981 -13.51290 -13.38128 -13.22360 -13.17129 -13.11636 -12.96797 -12.78706 -12.74242 -12.07937 -11.96063 -11.89554 -11.84286 -11.77368 -11.71642 -11.49300 -11.40932 -11.30492 -11.01470 -10.98739 -10.50812 -9.99012 -9.28518 -8.05203 -5.35795 -0.72491 1.29128 1.35138 1.39612 1.51094 1.61014 2.22499 2.43101 2.86866 3.22055 3.27716 3.44247 3.55009 3.74219 3.80795 3.86506 3.99224 4.01475 4.03179 4.16079 4.24900 4.33344 4.42455 4.54807 4.67129 4.73821 4.78985 4.82960 4.88981 4.91131 4.94011 4.95086 4.98179 5.12427 5.18500 5.20697 5.28539 5.36750 5.43860 5.51144 5.60002 5.62428 5.75910 5.85187 6.18902 6.54890 7.07226 7.22083 7.85312 8.02012 9.15969 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007488 B = 0.005491 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3738.197553 B = 5098.400278 C = 8115.122642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.136 3.864 3 H 0.155 0.845 4 N -1.109 6.109 5 S 2.616 3.384 6 C -0.650 4.650 7 O -1.001 7.001 8 O -0.985 6.985 9 C 0.507 3.493 10 O -0.568 6.568 11 N -0.696 5.696 12 C 0.145 3.855 13 H 0.078 0.922 14 C 0.141 3.859 15 N -0.754 5.754 16 C -0.221 4.221 17 H 0.063 0.937 18 C -0.056 4.056 19 N -0.981 5.981 20 Si 0.933 3.067 21 H -0.298 1.298 22 H -0.299 1.299 23 H -0.236 1.236 24 C -0.091 4.091 25 C -0.120 4.120 26 C -0.118 4.118 27 C -0.118 4.118 28 C -0.115 4.115 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.420 0.580 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.413 0.587 37 H 0.030 0.970 38 H 0.046 0.954 39 H 0.363 0.637 40 H 0.255 0.745 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.037 20.983 -3.987 28.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.025 3.975 3 H 0.173 0.827 4 N -0.867 5.867 5 S 2.712 3.288 6 C -0.804 4.804 7 O -0.992 6.992 8 O -0.975 6.975 9 C 0.292 3.708 10 O -0.446 6.446 11 N -0.349 5.349 12 C 0.040 3.960 13 H 0.096 0.904 14 C 0.015 3.985 15 N -0.399 5.399 16 C -0.353 4.353 17 H 0.081 0.919 18 C -0.248 4.248 19 N -0.632 5.632 20 Si 0.763 3.237 21 H -0.225 1.225 22 H -0.226 1.226 23 H -0.161 1.161 24 C -0.111 4.111 25 C -0.158 4.158 26 C -0.156 4.156 27 C -0.155 4.155 28 C -0.153 4.153 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.255 0.745 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.252 0.748 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.196 0.804 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.888 20.381 -4.743 28.189 hybrid contribution -0.176 -1.159 -0.406 1.240 sum 18.713 19.222 -5.149 27.316 Atomic orbital electron populations 1.22500 0.93175 1.03246 1.05097 1.20787 0.95772 0.97850 0.83057 0.82743 1.55500 1.82168 1.20369 1.28673 1.04562 0.77211 0.74608 0.72387 1.30325 1.18916 1.16246 1.14910 1.93572 1.85212 1.59786 1.60603 1.93585 1.48866 1.70878 1.84133 1.21010 0.79433 0.84694 0.85665 1.90690 1.39322 1.27765 1.86862 1.45777 1.56959 1.27553 1.04627 1.21196 0.94880 0.94838 0.85096 0.90371 1.21259 0.91041 0.94088 0.92153 1.42660 1.23635 1.63092 1.10530 1.19042 0.96620 1.23315 0.96292 0.91882 1.25291 0.97188 1.00831 1.01461 1.69846 1.16054 1.41064 1.36247 0.85815 0.76988 0.78918 0.82002 1.22532 1.22591 1.16066 1.22031 0.95311 0.96259 0.97502 1.22466 0.97746 0.93979 1.01625 1.22483 0.96665 0.97875 0.98570 1.22332 0.99949 0.94296 0.98953 1.22112 0.96661 0.96573 0.99940 0.89061 0.93774 0.89285 0.74507 0.83755 0.82861 0.82662 0.74842 0.95204 0.93628 0.80369 0.93557 0.89700 0.91320 0.91493 0.91383 0.90551 0.91151 0.90991 0.91794 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.40 9.42 71.98 0.68 -3.72 16 2 C 0.14 2.74 3.08 44.24 0.14 2.88 16 3 H 0.16 1.41 7.15 -2.39 -0.02 1.39 16 4 N -1.11 -24.06 5.15 -172.52 -0.89 -24.94 16 5 S 2.62 48.32 6.02 -56.49 -0.34 47.98 16 6 C -0.65 -4.58 10.78 113.37 1.22 -3.36 16 7 O -1.00 -27.27 18.08 -127.65 -2.31 -29.58 16 8 O -0.98 -23.54 17.11 -127.65 -2.18 -25.72 16 9 C 0.51 12.96 6.28 87.66 0.55 13.51 16 10 O -0.57 -18.77 15.33 -3.03 -0.05 -18.82 16 11 N -0.70 -15.65 3.57 -442.54 -1.58 -17.23 16 12 C 0.15 3.78 2.06 44.99 0.09 3.87 16 13 H 0.08 2.47 6.91 -2.39 -0.02 2.45 16 14 C 0.14 4.83 5.83 86.38 0.50 5.33 16 15 N -0.75 -34.04 5.24 -343.45 -1.80 -35.84 16 16 C -0.22 -12.43 10.47 84.04 0.88 -11.55 16 17 H 0.06 3.83 8.06 -2.91 -0.02 3.80 16 18 C -0.06 -3.33 5.50 84.87 0.47 -2.86 16 19 N -0.98 -63.39 13.97 21.65 0.30 -63.09 16 20 Si 0.93 47.27 27.74 68.60 1.90 49.17 16 21 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 22 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 23 H -0.24 -10.57 4.30 99.48 0.43 -10.14 16 24 C -0.09 -1.68 2.83 -10.07 -0.03 -1.71 16 25 C -0.12 -1.84 5.10 31.70 0.16 -1.68 16 26 C -0.12 -1.35 6.91 31.91 0.22 -1.13 16 27 C -0.12 -1.32 6.83 31.67 0.22 -1.11 16 28 C -0.12 -1.81 6.18 31.32 0.19 -1.62 16 29 H 0.09 1.88 7.68 -2.39 -0.02 1.86 16 30 H 0.04 1.40 5.92 -2.39 -0.01 1.39 16 31 H 0.09 2.07 7.42 -2.39 -0.02 2.05 16 32 H 0.42 10.59 8.17 -96.75 -0.79 9.80 16 33 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.16 0.31 7.44 -2.39 -0.02 0.29 16 36 H 0.41 7.02 6.59 -92.70 -0.61 6.41 16 37 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.05 1.47 7.05 -2.39 -0.02 1.45 16 39 H 0.36 16.41 4.66 -92.71 -0.43 15.97 16 40 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 41 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.07 1.03 5.98 -2.39 -0.01 1.02 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.05 1.01 7.05 -2.39 -0.02 0.99 16 Total: -1.00 -85.40 391.79 -2.78 -88.18 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: -1.13 Total: 33.05 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 5.29 Total: -3.16 kcal Atomic # 7 Polarization: -137.13 SS G_CDS: -3.96 Total: -141.10 kcal Atomic # 8 Polarization: -69.58 SS G_CDS: -4.54 Total: -74.12 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.90 Total: 49.17 kcal Atomic # 16 Polarization: 48.32 SS G_CDS: -0.34 Total: 47.98 kcal Total: -85.40 -2.78 -88.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500115310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.795 kcal (2) G-P(sol) polarization free energy of solvation -85.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds