Wall clock time and date at job start Wed Apr 1 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46940 * 2 1 4 4 N 1.46497 * 109.47185 * 120.00416 * 2 1 3 5 5 S 1.65601 * 120.00056 * 265.00213 * 4 2 1 6 6 C 1.81398 * 104.45075 * 64.99470 * 5 4 2 7 7 O 1.42107 * 104.27290 * 308.92636 * 5 4 2 8 8 O 1.42102 * 104.28063 * 181.07063 * 5 4 2 9 9 C 1.50696 * 109.46924 * 240.00304 * 2 1 3 10 10 O 1.21284 * 119.99804 * 239.99954 * 9 2 1 11 11 N 1.34772 * 120.00295 * 59.99789 * 9 2 1 12 12 C 1.46501 * 120.00030 * 174.71408 * 11 9 2 13 13 H 1.08999 * 109.47562 * 4.46380 * 12 11 9 14 14 C 1.53002 * 109.46905 * 124.46554 * 12 11 9 15 15 N 1.46506 * 109.47199 * 304.99656 * 14 12 11 16 16 C 1.36933 * 120.00259 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99791 * 0.02562 * 16 15 14 18 18 C 1.38808 * 119.99912 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00209 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99836 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46882 * 60.00081 * 20 18 16 22 22 H 1.48505 * 109.47126 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47271 * 299.99928 * 20 18 16 24 24 C 1.52999 * 109.47360 * 244.46083 * 12 11 9 25 25 C 1.54261 * 110.03643 * 181.00693 * 24 12 11 26 26 C 1.54892 * 104.19681 * 217.11061 * 25 24 12 27 27 C 1.54884 * 102.75080 * 37.93644 * 26 25 24 28 28 C 1.53879 * 110.03086 * 63.83910 * 24 12 11 29 29 H 1.09002 * 109.47188 * 59.99463 * 1 2 3 30 30 H 1.08999 * 109.47368 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46741 * 299.99886 * 1 2 3 32 32 H 0.97006 * 120.00513 * 84.99708 * 4 2 1 33 33 H 1.08998 * 109.47329 * 300.00448 * 6 5 4 34 34 H 1.09003 * 109.47083 * 60.00656 * 6 5 4 35 35 H 1.08998 * 109.47065 * 179.97438 * 6 5 4 36 36 H 0.97001 * 120.00272 * 354.71988 * 11 9 2 37 37 H 1.08995 * 109.47483 * 64.99973 * 14 12 11 38 38 H 1.09005 * 109.46970 * 184.99814 * 14 12 11 39 39 H 0.97002 * 119.99313 * 0.02562 * 15 14 12 40 40 H 0.96997 * 119.99906 * 179.97438 * 19 18 16 41 41 H 1.09004 * 110.01865 * 302.44707 * 24 12 11 42 42 H 1.08999 * 110.48506 * 335.78015 * 25 24 12 43 43 H 1.08999 * 110.49315 * 98.42341 * 25 24 12 44 44 H 1.09003 * 110.74847 * 279.62394 * 26 25 24 45 45 H 1.09003 * 110.91432 * 156.33302 * 26 25 24 46 46 H 1.08999 * 110.48442 * 203.38236 * 27 26 25 47 47 H 1.09001 * 110.59885 * 80.79693 * 27 26 25 48 48 H 1.09009 * 110.02927 * 238.57103 * 28 24 12 49 49 H 1.09001 * 110.02984 * 359.97438 * 28 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 16 2.4122 0.1770 2.5505 6 6 0.8408 0.8988 3.0985 7 8 3.2875 1.1905 2.0751 8 8 2.8607 -0.8031 3.4766 9 6 2.0323 -0.7103 -1.2305 10 8 2.7296 -1.6964 -1.1192 11 7 1.7067 -0.2499 -2.4545 12 6 2.2876 -0.8690 -3.6485 13 1 2.8909 -1.7282 -3.3553 14 6 1.1657 -1.3283 -4.5819 15 7 0.2533 -2.2114 -3.8512 16 6 -0.8341 -2.7494 -4.4863 17 1 -1.0188 -2.5230 -5.5261 18 6 -1.6988 -3.5856 -3.7938 19 7 -1.4735 -3.8619 -2.5268 20 14 -3.1825 -4.3189 -4.6601 21 1 -2.7277 -5.1442 -5.8078 22 1 -3.9406 -5.1705 -3.7084 23 1 -4.0585 -3.2257 -5.1528 24 6 3.1693 0.1497 -4.3736 25 6 3.7680 -0.4815 -5.6475 26 6 5.1977 0.1089 -5.7281 27 6 5.6364 0.1460 -4.2431 28 6 4.3573 0.5487 -3.4807 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.1110 -1.6563 1.1948 33 1 0.4387 1.5351 2.3102 34 1 0.1316 0.1008 3.3185 35 1 1.0078 1.4936 3.9964 36 1 1.0878 0.4915 -2.5451 37 1 0.6171 -0.4595 -4.9456 38 1 1.5940 -1.8673 -5.4270 39 1 0.4194 -2.4149 -2.9175 40 1 -2.0780 -4.4460 -2.0429 41 1 2.5841 1.0320 -4.6328 42 1 3.8083 -1.5666 -5.5529 43 1 3.1871 -0.1954 -6.5243 44 1 5.1774 1.1137 -6.1501 45 1 5.8541 -0.5391 -6.3089 46 1 6.4190 0.8901 -4.0951 47 1 5.9797 -0.8368 -3.9200 48 1 4.3491 1.6249 -3.3072 49 1 4.3054 0.0169 -2.5306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500115312.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:43 Heat of formation + Delta-G solvation = -110.562835 kcal Electronic energy + Delta-G solvation = -30349.748245 eV Core-core repulsion = 26245.717958 eV Total energy + Delta-G solvation = -4104.030288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.05693 -38.26485 -37.22054 -36.07802 -35.67133 -35.11577 -33.60223 -31.43867 -30.16147 -29.76929 -29.14045 -28.51761 -26.24816 -24.41905 -23.12516 -21.44245 -20.46231 -20.15960 -19.68055 -19.60048 -18.15523 -17.22818 -17.03149 -16.38736 -16.17789 -15.82797 -15.40020 -15.19649 -14.90517 -14.49343 -14.39213 -13.85819 -13.72162 -13.44262 -13.33880 -13.27493 -13.14501 -12.86595 -12.57417 -12.34556 -12.21891 -12.15039 -12.09860 -11.92535 -11.63581 -11.38379 -11.27236 -11.19153 -11.00938 -10.96440 -10.89687 -10.81631 -10.61571 -10.47854 -10.27979 -10.09273 -9.90336 -9.73563 -9.34874 -8.89521 -8.61659 -6.92958 -5.77174 -3.05930 0.10185 2.51718 2.88882 3.40610 3.42216 3.46677 3.47162 3.66811 4.03594 4.48196 4.53825 4.60523 4.69188 4.72949 4.78481 4.82657 4.90120 5.02725 5.23288 5.28604 5.37616 5.53694 5.54123 5.56611 5.60960 5.64200 5.73617 5.75865 5.89238 5.92583 5.94558 6.01672 6.05270 6.16512 6.25909 6.29143 6.35027 6.40446 6.48023 6.53481 6.68355 6.95404 6.97270 7.67127 7.79535 8.41042 8.50740 9.52815 10.11043 10.46728 11.44908 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007274 B = 0.004328 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3848.521114 B = 6468.163433 C = 9749.180263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.130 3.870 3 H 0.113 0.887 4 N -1.098 6.098 5 S 2.617 3.383 6 C -0.677 4.677 7 O -0.959 6.959 8 O -0.957 6.957 9 C 0.520 3.480 10 O -0.528 6.528 11 N -0.707 5.707 12 C 0.138 3.862 13 H 0.101 0.899 14 C 0.143 3.857 15 N -0.728 5.728 16 C -0.240 4.240 17 H 0.068 0.932 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.097 4.097 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.119 4.119 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.429 0.571 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.399 0.601 37 H 0.019 0.981 38 H 0.031 0.969 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.400 14.692 4.822 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.018 3.982 3 H 0.130 0.870 4 N -0.859 5.859 5 S 2.708 3.292 6 C -0.827 4.827 7 O -0.949 6.949 8 O -0.947 6.947 9 C 0.304 3.696 10 O -0.403 6.403 11 N -0.358 5.358 12 C 0.033 3.967 13 H 0.119 0.881 14 C 0.015 3.985 15 N -0.373 5.373 16 C -0.372 4.372 17 H 0.086 0.914 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.214 1.214 24 C -0.117 4.117 25 C -0.154 4.154 26 C -0.162 4.162 27 C -0.162 4.162 28 C -0.157 4.157 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.266 0.734 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.233 0.767 37 H 0.037 0.963 38 H 0.048 0.952 39 H 0.221 0.779 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.636 14.200 5.182 17.408 hybrid contribution -2.004 -0.445 -0.291 2.073 sum 6.632 13.755 4.891 16.034 Atomic orbital electron populations 1.22431 0.92497 1.05532 1.03069 1.20681 0.95661 0.96822 0.85032 0.86969 1.55334 1.83801 1.21070 1.25713 1.04627 0.76592 0.74502 0.73435 1.30676 1.24793 1.14345 1.12837 1.93612 1.60907 1.60977 1.79422 1.93626 1.79516 1.58708 1.62887 1.20247 0.80321 0.84549 0.84519 1.90708 1.38319 1.25094 1.86185 1.45728 1.47639 1.37148 1.05273 1.21481 0.95009 0.95720 0.84522 0.88100 1.21019 0.90183 0.93639 0.93674 1.42294 1.27539 1.55429 1.12004 1.19159 1.00906 1.22259 0.94841 0.91391 1.24712 0.99392 1.00621 0.96035 1.69661 1.39007 1.40891 1.08275 0.86306 0.82818 0.78851 0.78385 1.21329 1.21757 1.21387 1.22097 0.96073 0.98335 0.95191 1.22389 0.95331 1.00798 0.96881 1.22490 0.96624 1.00582 0.96456 1.22347 0.97318 1.01304 0.95236 1.22178 0.93849 1.00579 0.99065 0.90276 0.89583 0.91659 0.73369 0.85155 0.84867 0.85440 0.76710 0.96292 0.95153 0.77931 0.93561 0.90852 0.90949 0.91419 0.91848 0.91849 0.92201 0.91687 0.92264 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 9.37 37.16 0.35 -1.52 16 2 C 0.13 1.52 3.23 -69.08 -0.22 1.29 16 3 H 0.11 1.03 7.48 -51.93 -0.39 0.64 16 4 N -1.10 -13.00 5.15 -5.88 -0.03 -13.03 16 5 S 2.62 27.33 6.08 -107.50 -0.65 26.67 16 6 C -0.68 -4.15 10.04 101.05 1.01 -3.14 16 7 O -0.96 -12.85 17.39 -57.54 -1.00 -13.85 16 8 O -0.96 -13.48 18.08 -57.54 -1.04 -14.52 16 9 C 0.52 8.10 6.48 -10.99 -0.07 8.03 16 10 O -0.53 -10.32 15.33 5.55 0.09 -10.23 16 11 N -0.71 -10.07 3.93 -53.81 -0.21 -10.28 16 12 C 0.14 2.15 1.71 -67.93 -0.12 2.03 16 13 H 0.10 1.88 6.91 -51.93 -0.36 1.52 16 14 C 0.14 2.69 5.60 -4.04 -0.02 2.67 16 15 N -0.73 -17.69 5.43 -59.91 -0.33 -18.02 16 16 C -0.24 -6.53 9.99 -15.06 -0.15 -6.68 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 20 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 C -0.10 -1.20 2.71 -89.50 -0.24 -1.44 16 25 C -0.12 -1.37 5.33 -25.07 -0.13 -1.50 16 26 C -0.12 -1.28 6.91 -24.74 -0.17 -1.45 16 27 C -0.12 -1.39 6.83 -25.08 -0.17 -1.56 16 28 C -0.12 -1.44 6.24 -25.61 -0.16 -1.60 16 29 H 0.08 0.78 7.45 -51.93 -0.39 0.40 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.48 5.78 -51.93 -0.30 0.18 16 32 H 0.43 5.62 8.17 -34.47 -0.28 5.34 16 33 H 0.13 0.61 6.77 -51.93 -0.35 0.25 16 34 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.13 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.40 4.70 8.11 -40.82 -0.33 4.37 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.03 0.59 7.19 -51.93 -0.37 0.21 16 39 H 0.39 10.10 7.30 -40.82 -0.30 9.81 16 40 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.95 7.55 -51.93 -0.39 0.56 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 49 H 0.07 0.97 6.87 -51.93 -0.36 0.62 16 LS Contribution 400.56 15.07 6.04 6.04 Total: -1.00 -37.04 400.56 -9.65 -46.69 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -8.02 Total: 15.54 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.20 Total: -5.27 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: 0.16 Total: -68.04 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -1.96 Total: -38.60 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 27.33 SS G_CDS: -0.65 Total: 26.67 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.04 -9.65 -46.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500115312.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.872 kcal (2) G-P(sol) polarization free energy of solvation -37.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds