Wall clock time and date at job start Wed Apr 1 2020 05:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46940 * 2 1 4 4 N 1.46497 * 109.47185 * 120.00416 * 2 1 3 5 5 S 1.65601 * 120.00056 * 265.00213 * 4 2 1 6 6 C 1.81398 * 104.45075 * 64.99470 * 5 4 2 7 7 O 1.42107 * 104.27290 * 308.92636 * 5 4 2 8 8 O 1.42102 * 104.28063 * 181.07063 * 5 4 2 9 9 C 1.50696 * 109.46924 * 240.00304 * 2 1 3 10 10 O 1.21284 * 119.99804 * 239.99954 * 9 2 1 11 11 N 1.34772 * 120.00295 * 59.99789 * 9 2 1 12 12 C 1.46501 * 120.00030 * 174.71408 * 11 9 2 13 13 H 1.08999 * 109.47562 * 4.46380 * 12 11 9 14 14 C 1.53002 * 109.46905 * 124.46554 * 12 11 9 15 15 N 1.46506 * 109.47199 * 304.99656 * 14 12 11 16 16 C 1.36933 * 120.00259 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99791 * 0.02562 * 16 15 14 18 18 C 1.38808 * 119.99912 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00209 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99836 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46882 * 60.00081 * 20 18 16 22 22 H 1.48505 * 109.47126 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47271 * 299.99928 * 20 18 16 24 24 C 1.52999 * 109.47360 * 244.46083 * 12 11 9 25 25 C 1.54261 * 110.03643 * 181.00693 * 24 12 11 26 26 C 1.54892 * 104.19681 * 217.11061 * 25 24 12 27 27 C 1.54884 * 102.75080 * 37.93644 * 26 25 24 28 28 C 1.53879 * 110.03086 * 63.83910 * 24 12 11 29 29 H 1.09002 * 109.47188 * 59.99463 * 1 2 3 30 30 H 1.08999 * 109.47368 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46741 * 299.99886 * 1 2 3 32 32 H 0.97006 * 120.00513 * 84.99708 * 4 2 1 33 33 H 1.08998 * 109.47329 * 300.00448 * 6 5 4 34 34 H 1.09003 * 109.47083 * 60.00656 * 6 5 4 35 35 H 1.08998 * 109.47065 * 179.97438 * 6 5 4 36 36 H 0.97001 * 120.00272 * 354.71988 * 11 9 2 37 37 H 1.08995 * 109.47483 * 64.99973 * 14 12 11 38 38 H 1.09005 * 109.46970 * 184.99814 * 14 12 11 39 39 H 0.97002 * 119.99313 * 0.02562 * 15 14 12 40 40 H 0.96997 * 119.99906 * 179.97438 * 19 18 16 41 41 H 1.09004 * 110.01865 * 302.44707 * 24 12 11 42 42 H 1.08999 * 110.48506 * 335.78015 * 25 24 12 43 43 H 1.08999 * 110.49315 * 98.42341 * 25 24 12 44 44 H 1.09003 * 110.74847 * 279.62394 * 26 25 24 45 45 H 1.09003 * 110.91432 * 156.33302 * 26 25 24 46 46 H 1.08999 * 110.48442 * 203.38236 * 27 26 25 47 47 H 1.09001 * 110.59885 * 80.79693 * 27 26 25 48 48 H 1.09009 * 110.02927 * 238.57103 * 28 24 12 49 49 H 1.09001 * 110.02984 * 359.97438 * 28 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 16 2.4122 0.1770 2.5505 6 6 0.8408 0.8988 3.0985 7 8 3.2875 1.1905 2.0751 8 8 2.8607 -0.8031 3.4766 9 6 2.0323 -0.7103 -1.2305 10 8 2.7296 -1.6964 -1.1192 11 7 1.7067 -0.2499 -2.4545 12 6 2.2876 -0.8690 -3.6485 13 1 2.8909 -1.7282 -3.3553 14 6 1.1657 -1.3283 -4.5819 15 7 0.2533 -2.2114 -3.8512 16 6 -0.8341 -2.7494 -4.4863 17 1 -1.0188 -2.5230 -5.5261 18 6 -1.6988 -3.5856 -3.7938 19 7 -1.4735 -3.8619 -2.5268 20 14 -3.1825 -4.3189 -4.6601 21 1 -2.7277 -5.1442 -5.8078 22 1 -3.9406 -5.1705 -3.7084 23 1 -4.0585 -3.2257 -5.1528 24 6 3.1693 0.1497 -4.3736 25 6 3.7680 -0.4815 -5.6475 26 6 5.1977 0.1089 -5.7281 27 6 5.6364 0.1460 -4.2431 28 6 4.3573 0.5487 -3.4807 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.1110 -1.6563 1.1948 33 1 0.4387 1.5351 2.3102 34 1 0.1316 0.1008 3.3185 35 1 1.0078 1.4936 3.9964 36 1 1.0878 0.4915 -2.5451 37 1 0.6171 -0.4595 -4.9456 38 1 1.5940 -1.8673 -5.4270 39 1 0.4194 -2.4149 -2.9175 40 1 -2.0780 -4.4460 -2.0429 41 1 2.5841 1.0320 -4.6328 42 1 3.8083 -1.5666 -5.5529 43 1 3.1871 -0.1954 -6.5243 44 1 5.1774 1.1137 -6.1501 45 1 5.8541 -0.5391 -6.3089 46 1 6.4190 0.8901 -4.0951 47 1 5.9797 -0.8368 -3.9200 48 1 4.3491 1.6249 -3.3072 49 1 4.3054 0.0169 -2.5306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500115312.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:42 Heat of formation + Delta-G solvation = -140.900336 kcal Electronic energy + Delta-G solvation = -30351.063778 eV Core-core repulsion = 26245.717958 eV Total energy + Delta-G solvation = -4105.345820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27149 -39.33809 -38.17692 -37.03244 -36.91660 -36.37942 -35.24555 -33.09347 -31.46815 -30.53399 -30.04281 -29.46675 -27.74038 -25.67068 -24.73331 -22.79422 -21.61128 -21.22749 -20.69104 -20.50116 -19.29915 -18.97896 -18.07447 -17.46855 -17.15819 -16.82357 -16.70978 -16.44659 -16.18826 -15.79372 -15.51654 -15.18262 -14.97789 -14.70528 -14.39354 -14.21396 -13.98883 -13.96178 -13.92405 -13.51228 -13.24521 -13.18400 -13.11646 -12.98062 -12.90513 -12.78338 -12.59703 -12.54980 -12.27503 -12.15732 -11.96511 -11.92820 -11.87032 -11.79416 -11.60938 -11.42447 -11.34346 -10.99519 -10.87395 -10.44067 -9.89314 -8.95069 -7.90242 -5.18988 -0.68662 1.48026 1.50788 1.56573 1.64341 1.69126 2.28131 2.57810 2.90003 3.27058 3.42722 3.52550 3.64213 3.74910 3.84157 3.96349 4.06638 4.10223 4.16752 4.19419 4.26165 4.40806 4.43676 4.60634 4.62906 4.73912 4.74395 4.77982 4.85569 4.88527 4.96997 5.01537 5.03670 5.06468 5.11205 5.21653 5.29536 5.34926 5.37061 5.49369 5.52135 5.53706 5.68728 5.91804 6.29822 6.63321 7.33001 7.37487 8.13902 8.37448 9.32191 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007274 B = 0.004328 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3848.521114 B = 6468.163433 C = 9749.180263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 H 0.144 0.856 4 N -1.108 6.108 5 S 2.619 3.381 6 C -0.650 4.650 7 O -0.995 6.995 8 O -1.002 7.002 9 C 0.509 3.491 10 O -0.578 6.578 11 N -0.699 5.699 12 C 0.149 3.851 13 H 0.063 0.937 14 C 0.144 3.856 15 N -0.740 5.740 16 C -0.243 4.243 17 H 0.076 0.924 18 C -0.071 4.071 19 N -0.965 5.965 20 Si 0.969 3.031 21 H -0.284 1.284 22 H -0.299 1.299 23 H -0.274 1.274 24 C -0.087 4.087 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.126 4.126 28 C -0.116 4.116 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.419 0.581 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.413 0.587 37 H 0.038 0.962 38 H 0.028 0.972 39 H 0.374 0.626 40 H 0.248 0.752 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.047 0.953 48 H 0.078 0.922 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.131 17.770 4.058 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.022 3.978 3 H 0.162 0.838 4 N -0.866 5.866 5 S 2.716 3.284 6 C -0.804 4.804 7 O -0.985 6.985 8 O -0.993 6.993 9 C 0.294 3.706 10 O -0.457 6.457 11 N -0.350 5.350 12 C 0.043 3.957 13 H 0.081 0.919 14 C 0.016 3.984 15 N -0.383 5.383 16 C -0.375 4.375 17 H 0.094 0.906 18 C -0.264 4.264 19 N -0.616 5.616 20 Si 0.799 3.201 21 H -0.210 1.210 22 H -0.225 1.225 23 H -0.200 1.200 24 C -0.107 4.107 25 C -0.157 4.157 26 C -0.153 4.153 27 C -0.164 4.164 28 C -0.153 4.153 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.254 0.746 33 H 0.175 0.825 34 H 0.168 0.832 35 H 0.172 0.828 36 H 0.250 0.750 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.206 0.794 40 H 0.057 0.943 41 H 0.115 0.885 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.408 17.323 4.349 19.336 hybrid contribution -1.599 -1.370 -0.066 2.106 sum 5.810 15.953 4.283 17.510 Atomic orbital electron populations 1.22437 0.91245 1.03807 1.05564 1.20820 0.96420 0.97548 0.82964 0.83821 1.55397 1.84160 1.20599 1.26450 1.04417 0.78125 0.73486 0.72397 1.30434 1.20206 1.15098 1.14668 1.93558 1.63900 1.61204 1.79823 1.93565 1.81603 1.60452 1.63664 1.21076 0.79484 0.84104 0.85893 1.90682 1.40620 1.27452 1.86951 1.45658 1.47570 1.37048 1.04703 1.21230 0.93906 0.95869 0.84686 0.91903 1.21184 0.90262 0.93128 0.93784 1.42489 1.27884 1.56237 1.11697 1.19574 1.01231 1.21514 0.95169 0.90632 1.25486 1.02389 1.01755 0.96742 1.69834 1.40040 1.41942 1.09758 0.85279 0.79662 0.78112 0.77055 1.21015 1.22533 1.19993 1.22056 0.95762 0.97903 0.95004 1.22414 0.96808 0.99551 0.96954 1.22462 0.95339 1.01672 0.95784 1.22362 0.97309 1.00861 0.95859 1.22138 0.94213 1.01299 0.97691 0.89408 0.93332 0.87566 0.74557 0.82490 0.83244 0.82777 0.75016 0.94415 0.95399 0.79431 0.94275 0.88542 0.93172 0.90200 0.89861 0.91186 0.90545 0.93455 0.90305 0.94334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 9.37 71.98 0.67 -2.71 16 2 C 0.13 3.06 3.23 44.25 0.14 3.20 16 3 H 0.14 2.35 7.48 -2.39 -0.02 2.33 16 4 N -1.11 -26.84 5.15 -172.53 -0.89 -27.72 16 5 S 2.62 53.35 6.08 -56.49 -0.34 53.00 16 6 C -0.65 -5.44 10.04 113.37 1.14 -4.30 16 7 O -0.99 -26.23 17.39 -127.65 -2.22 -28.45 16 8 O -1.00 -29.11 18.08 -127.65 -2.31 -31.42 16 9 C 0.51 16.46 6.48 87.66 0.57 17.03 16 10 O -0.58 -24.37 15.33 -3.04 -0.05 -24.42 16 11 N -0.70 -20.00 3.93 -442.54 -1.74 -21.73 16 12 C 0.15 4.73 1.71 44.99 0.08 4.81 16 13 H 0.06 2.52 6.91 -2.39 -0.02 2.50 16 14 C 0.14 5.38 5.60 86.38 0.48 5.86 16 15 N -0.74 -36.59 5.43 -343.44 -1.87 -38.46 16 16 C -0.24 -13.21 9.99 84.03 0.84 -12.37 16 17 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 18 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 19 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 20 Si 0.97 45.37 29.55 68.60 2.03 47.40 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C -0.09 -2.06 2.71 -10.07 -0.03 -2.09 16 25 C -0.12 -2.68 5.33 31.67 0.17 -2.51 16 26 C -0.12 -2.14 6.91 31.88 0.22 -1.92 16 27 C -0.13 -2.69 6.83 31.67 0.22 -2.48 16 28 C -0.12 -2.71 6.24 31.32 0.20 -2.51 16 29 H 0.09 1.56 7.45 -2.39 -0.02 1.55 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.11 1.16 5.78 -2.39 -0.01 1.15 16 32 H 0.42 11.95 8.17 -96.74 -0.79 11.16 16 33 H 0.16 0.60 6.77 -2.39 -0.02 0.59 16 34 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.41 9.22 8.11 -92.71 -0.75 8.47 16 37 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.03 1.08 7.19 -2.38 -0.02 1.06 16 39 H 0.37 20.29 7.30 -92.71 -0.68 19.61 16 40 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.34 7.55 -2.39 -0.02 1.32 16 43 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 49 H 0.04 1.14 6.87 -2.39 -0.02 1.12 16 Total: -1.00 -84.67 400.56 -3.18 -87.84 By element: Atomic # 1 Polarization: 46.81 SS G_CDS: -1.24 Total: 45.58 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.16 Total: -3.53 kcal Atomic # 7 Polarization: -141.78 SS G_CDS: -4.21 Total: -146.00 kcal Atomic # 8 Polarization: -79.72 SS G_CDS: -4.57 Total: -84.29 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: 53.35 SS G_CDS: -0.34 Total: 53.00 kcal Total: -84.67 -3.18 -87.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500115312.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.056 kcal (2) G-P(sol) polarization free energy of solvation -84.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds