Wall clock time and date at job start Wed Apr 1 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.70069 * 2 1 4 4 C 1.53195 * 109.58406 * 120.35209 * 2 1 3 5 5 C 1.53036 * 109.31066 * 174.42143 * 4 2 1 6 6 H 1.09003 * 109.45849 * 58.65958 * 5 4 2 7 7 N 1.46510 * 109.45909 * 178.61325 * 5 4 2 8 8 C 1.34773 * 120.00063 * 204.99875 * 7 5 4 9 9 O 1.21286 * 119.99956 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00150 * 179.97438 * 8 7 5 11 11 C 1.53000 * 109.47291 * 180.02562 * 10 8 7 12 12 S 1.81402 * 109.47049 * 180.02562 * 11 10 8 13 13 O 1.42099 * 110.54379 * 291.62435 * 12 11 10 14 14 O 1.42099 * 110.54036 * 68.38182 * 12 11 10 15 15 N 1.65601 * 104.44656 * 179.97438 * 12 11 10 16 16 C 1.46500 * 119.99781 * 90.00315 * 15 12 11 17 17 C 1.46494 * 120.00417 * 270.00096 * 15 12 11 18 18 C 1.53042 * 109.54282 * 298.63232 * 5 4 2 19 19 C 1.52764 * 109.37896 * 61.23857 * 18 5 4 20 20 N 1.46923 * 109.58497 * 239.63952 * 2 1 3 21 21 C 1.36930 * 120.63302 * 6.58372 * 20 2 1 22 22 H 1.08004 * 119.99836 * 331.01319 * 21 20 2 23 23 C 1.38809 * 120.00040 * 151.28895 * 21 20 2 24 24 N 1.31626 * 120.00186 * 160.55216 * 23 21 20 25 25 Si 1.86805 * 120.00034 * 340.55689 * 23 21 20 26 26 H 1.48496 * 109.47280 * 92.43391 * 25 23 21 27 27 H 1.48498 * 109.46739 * 212.43532 * 25 23 21 28 28 H 1.48493 * 109.46820 * 332.43401 * 25 23 21 29 29 H 1.08999 * 109.47384 * 180.36031 * 1 2 3 30 30 H 1.09008 * 109.47113 * 300.36097 * 1 2 3 31 31 H 1.09000 * 109.47162 * 60.35639 * 1 2 3 32 32 H 1.09001 * 109.50026 * 294.37636 * 4 2 1 33 33 H 1.08997 * 109.49902 * 54.46769 * 4 2 1 34 34 H 0.96991 * 119.99874 * 24.99996 * 7 5 4 35 35 H 1.08991 * 109.47416 * 300.00417 * 10 8 7 36 36 H 1.09005 * 109.46455 * 60.00472 * 10 8 7 37 37 H 1.09005 * 109.47319 * 300.00461 * 11 10 8 38 38 H 1.08999 * 109.47075 * 60.00308 * 11 10 8 39 39 H 1.08994 * 109.47562 * 89.99772 * 16 15 12 40 40 H 1.09001 * 109.47193 * 210.00063 * 16 15 12 41 41 H 1.09001 * 109.46941 * 329.99697 * 16 15 12 42 42 H 1.09000 * 109.47030 * 60.00052 * 17 15 12 43 43 H 1.09004 * 109.47621 * 179.97438 * 17 15 12 44 44 H 1.09008 * 109.47258 * 300.00163 * 17 15 12 45 45 H 1.08997 * 109.50062 * 181.31436 * 18 5 4 46 46 H 1.08998 * 109.49485 * 301.39001 * 18 5 4 47 47 H 1.08991 * 109.51134 * 185.70835 * 19 18 5 48 48 H 1.09001 * 109.42906 * 65.42307 * 19 18 5 49 49 H 0.96998 * 120.00252 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5674 -0.8480 1.1702 6 1 4.0060 0.1474 1.0994 7 7 4.0651 -1.5157 2.3756 8 6 5.3293 -1.3021 2.7910 9 8 6.0549 -0.5568 2.1672 10 6 5.8411 -1.9885 4.0312 11 6 7.2937 -1.5770 4.2792 12 16 7.9099 -2.4038 5.7717 13 8 7.2571 -1.8975 6.9278 14 8 8.0317 -3.8025 5.5525 15 7 9.4727 -1.8768 5.9205 16 6 9.7673 -0.6665 6.6916 17 6 10.5607 -2.6209 5.2812 18 6 3.9569 -1.6658 -0.0633 19 6 3.4644 -0.9521 -1.3209 20 7 2.0225 -0.6996 -1.1944 21 6 1.1537 -1.1136 -2.1684 22 1 0.1359 -1.3679 -1.9116 23 6 1.5825 -1.2120 -3.4849 24 7 0.9102 -1.9499 -4.3428 25 14 3.1140 -0.2971 -4.0392 26 1 4.2971 -1.1841 -3.9027 27 1 2.9610 0.1092 -5.4593 28 1 3.3012 0.9109 -3.1961 29 1 -0.3634 -1.0276 0.0065 30 1 -0.3634 0.5195 0.8868 31 1 -0.3633 0.5083 -0.8932 32 1 1.7659 -0.1668 2.1369 33 1 1.6029 -1.7252 1.2915 34 1 3.4848 -2.1114 2.8746 35 1 5.2304 -1.6975 4.8858 36 1 5.7870 -3.0689 3.8970 37 1 7.9047 -1.8677 3.4246 38 1 7.3474 -0.4967 4.4135 39 1 9.9510 -0.9342 7.7321 40 1 10.6516 -0.1798 6.2801 41 1 8.9185 0.0151 6.6362 42 1 10.3952 -2.6530 4.2043 43 1 11.5098 -2.1262 5.4878 44 1 10.5868 -3.6369 5.6753 45 1 5.0412 -1.7697 -0.1035 46 1 3.4987 -2.6531 -0.0047 47 1 3.6503 -1.5799 -2.1922 48 1 3.9928 -0.0051 -1.4309 49 1 1.2101 -2.0189 -5.2626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001503013626.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:24 Heat of formation + Delta-G solvation = -81.206003 kcal Electronic energy + Delta-G solvation = -29248.101781 eV Core-core repulsion = 25145.344502 eV Total energy + Delta-G solvation = -4102.757280 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -40.03806 -38.06742 -37.55308 -36.69021 -36.26761 -34.84688 -33.55323 -32.41856 -31.71433 -30.17350 -28.57467 -26.75367 -25.87779 -25.07379 -24.21271 -22.66549 -21.10767 -20.34695 -19.41379 -19.31534 -18.24600 -17.35223 -16.87360 -16.60957 -16.32895 -16.05556 -15.87191 -15.19378 -14.87753 -14.82615 -14.58818 -14.01915 -13.85761 -13.78632 -13.63531 -13.46623 -13.18679 -13.07414 -12.92695 -12.72754 -12.52302 -12.46826 -12.14245 -12.02971 -11.98154 -11.89709 -11.87629 -11.39434 -11.28474 -11.18271 -11.06165 -10.63764 -10.42556 -10.23267 -10.11669 -10.02420 -9.71548 -9.53584 -9.43121 -8.91090 -8.62276 -6.97243 -5.94994 -3.32946 -0.21888 2.14845 2.51935 3.05917 3.33179 3.43847 3.49165 3.52607 3.72045 3.94818 4.21000 4.35470 4.53071 4.57193 4.82124 4.83823 4.90857 4.93933 5.05695 5.08076 5.12156 5.25912 5.29897 5.33485 5.34698 5.36886 5.46417 5.57900 5.71252 5.94187 5.97115 5.99013 6.06014 6.17132 6.22081 6.32529 6.37964 6.45287 6.59291 6.65718 6.75482 6.92627 7.02307 7.47486 7.96394 8.15154 8.34353 8.92872 9.72127 10.09301 11.20470 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.002181 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.771599 B =12837.891331 C =13461.360770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.175 3.825 3 H 0.032 0.968 4 C -0.136 4.136 5 C 0.149 3.851 6 H 0.083 0.917 7 N -0.722 5.722 8 C 0.519 3.481 9 O -0.537 6.537 10 C -0.137 4.137 11 C -0.611 4.611 12 S 2.611 3.389 13 O -0.952 6.952 14 O -0.950 6.950 15 N -1.009 6.009 16 C 0.092 3.908 17 C 0.089 3.911 18 C -0.141 4.141 19 C 0.129 3.871 20 N -0.602 5.602 21 C -0.259 4.259 22 H 0.092 0.908 23 C 0.024 3.976 24 N -0.909 5.909 25 Si 0.881 3.119 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.270 1.270 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.399 0.601 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.026 0.974 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.635 0.898 22.747 27.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.068 3.932 3 H 0.049 0.951 4 C -0.176 4.176 5 C 0.046 3.954 6 H 0.101 0.899 7 N -0.373 5.373 8 C 0.303 3.697 9 O -0.414 6.414 10 C -0.178 4.178 11 C -0.740 4.740 12 S 2.704 3.296 13 O -0.942 6.942 14 O -0.941 6.941 15 N -0.848 5.848 16 C -0.053 4.053 17 C -0.057 4.057 18 C -0.182 4.182 19 C 0.003 3.997 20 N -0.327 5.327 21 C -0.387 4.387 22 H 0.109 0.891 23 C -0.175 4.175 24 N -0.552 5.552 25 Si 0.712 3.288 26 H -0.217 1.217 27 H -0.232 1.232 28 H -0.195 1.195 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.233 0.767 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.044 0.956 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.719 0.812 22.700 27.623 hybrid contribution 0.861 0.613 -0.859 1.362 sum 16.580 1.425 21.841 27.458 Atomic orbital electron populations 1.21804 0.94907 1.01998 1.00638 1.20374 0.93795 0.93341 0.85659 0.95064 1.22393 0.93318 1.02193 0.99710 1.21039 0.94610 0.96639 0.83129 0.89884 1.46269 1.13134 1.48744 1.29110 1.20138 0.82156 0.81848 0.85566 1.90713 1.56205 1.37334 1.57126 1.21379 0.93884 1.03109 0.99445 1.30442 1.05421 1.15530 1.22654 1.05133 0.73108 0.74859 0.76502 1.93607 1.74249 1.81535 1.44794 1.93604 1.84886 1.28664 1.86897 1.57365 1.23973 1.38309 1.65158 1.21544 1.02490 0.85386 0.95872 1.21576 0.90210 0.96757 0.97116 1.22326 1.00042 1.00066 0.95717 1.21228 0.85220 0.97247 0.96021 1.44481 1.02011 1.65574 1.20625 1.18916 0.95670 1.38357 0.85766 0.89067 1.25310 0.97592 0.98715 0.95858 1.69817 1.41317 1.39286 1.04823 0.86979 0.83400 0.81479 0.76977 1.21680 1.23219 1.19537 0.92317 0.94048 0.91519 0.92116 0.91210 0.76698 0.87354 0.87268 0.84212 0.84285 0.92158 0.90810 0.90940 0.92097 0.90087 0.91230 0.92423 0.91536 0.90666 0.95608 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.94 37.16 0.30 -2.08 16 2 C 0.18 3.27 3.50 -67.60 -0.24 3.03 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.14 -2.04 4.84 -26.61 -0.13 -2.17 16 5 C 0.15 2.31 2.42 -67.88 -0.16 2.15 16 6 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 7 N -0.72 -8.73 5.08 -53.76 -0.27 -9.00 16 8 C 0.52 6.51 7.79 -10.99 -0.09 6.43 16 9 O -0.54 -8.80 15.65 5.55 0.09 -8.71 16 10 C -0.14 -1.16 5.71 -27.88 -0.16 -1.32 16 11 C -0.61 -4.78 5.47 37.16 0.20 -4.58 16 12 S 2.61 22.04 5.38 -107.50 -0.58 21.46 16 13 O -0.95 -10.47 17.09 -57.54 -0.98 -11.45 16 14 O -0.95 -10.71 17.10 -57.54 -0.98 -11.69 16 15 N -1.01 -6.71 3.52 -129.20 -0.45 -7.16 16 16 C 0.09 0.46 10.17 59.85 0.61 1.07 16 17 C 0.09 0.46 10.25 59.84 0.61 1.08 16 18 C -0.14 -2.55 5.64 -26.83 -0.15 -2.70 16 19 C 0.13 2.82 4.17 -3.93 -0.02 2.80 16 20 N -0.60 -13.79 2.76 -165.03 -0.45 -14.24 16 21 C -0.26 -6.94 9.04 -15.06 -0.14 -7.07 16 22 H 0.09 2.57 6.39 -52.48 -0.34 2.23 16 23 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 24 N -0.91 -27.51 13.97 55.49 0.78 -26.74 16 25 Si 0.88 22.45 24.35 -169.99 -4.14 18.31 16 26 H -0.29 -7.19 6.63 56.52 0.37 -6.81 16 27 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 28 H -0.27 -6.81 6.63 56.52 0.37 -6.43 16 29 H 0.06 1.07 7.44 -51.93 -0.39 0.68 16 30 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.07 1.28 7.62 -51.93 -0.40 0.89 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.40 3.59 8.60 -40.82 -0.35 3.24 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.14 1.06 8.10 -51.92 -0.42 0.64 16 38 H 0.14 1.00 8.10 -51.92 -0.42 0.58 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.22 7.92 -51.93 -0.41 -0.19 16 41 H 0.07 0.33 7.79 -51.93 -0.40 -0.08 16 42 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.08 0.26 7.79 -51.93 -0.40 -0.15 16 44 H 0.07 0.40 7.90 -51.92 -0.41 -0.01 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.08 1.81 4.62 -51.93 -0.24 1.57 16 48 H 0.03 0.58 7.04 -51.93 -0.37 0.21 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -37.06 394.04 -8.87 -45.93 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -8.36 Total: 0.11 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 0.55 Total: -2.76 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.41 Total: -57.14 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -1.88 Total: -31.86 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.14 Total: 18.31 kcal Atomic # 16 Polarization: 22.04 SS G_CDS: -0.58 Total: 21.46 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.06 -8.87 -45.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503013626.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.272 kcal (2) G-P(sol) polarization free energy of solvation -37.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds