Wall clock time and date at job start Wed Apr 1 2020 05:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.70069 * 2 1 4 4 C 1.53195 * 109.58406 * 120.35209 * 2 1 3 5 5 C 1.53036 * 109.31066 * 174.42143 * 4 2 1 6 6 H 1.09003 * 109.45849 * 58.65958 * 5 4 2 7 7 N 1.46510 * 109.45909 * 178.61325 * 5 4 2 8 8 C 1.34773 * 120.00063 * 204.99875 * 7 5 4 9 9 O 1.21286 * 119.99956 * 0.02562 * 8 7 5 10 10 C 1.50699 * 120.00150 * 179.97438 * 8 7 5 11 11 C 1.53000 * 109.47291 * 180.02562 * 10 8 7 12 12 S 1.81402 * 109.47049 * 180.02562 * 11 10 8 13 13 O 1.42099 * 110.54379 * 291.62435 * 12 11 10 14 14 O 1.42099 * 110.54036 * 68.38182 * 12 11 10 15 15 N 1.65601 * 104.44656 * 179.97438 * 12 11 10 16 16 C 1.46500 * 119.99781 * 90.00315 * 15 12 11 17 17 C 1.46494 * 120.00417 * 270.00096 * 15 12 11 18 18 C 1.53042 * 109.54282 * 298.63232 * 5 4 2 19 19 C 1.52764 * 109.37896 * 61.23857 * 18 5 4 20 20 N 1.46923 * 109.58497 * 239.63952 * 2 1 3 21 21 C 1.36930 * 120.63302 * 6.58372 * 20 2 1 22 22 H 1.08004 * 119.99836 * 331.01319 * 21 20 2 23 23 C 1.38809 * 120.00040 * 151.28895 * 21 20 2 24 24 N 1.31626 * 120.00186 * 160.55216 * 23 21 20 25 25 Si 1.86805 * 120.00034 * 340.55689 * 23 21 20 26 26 H 1.48496 * 109.47280 * 92.43391 * 25 23 21 27 27 H 1.48498 * 109.46739 * 212.43532 * 25 23 21 28 28 H 1.48493 * 109.46820 * 332.43401 * 25 23 21 29 29 H 1.08999 * 109.47384 * 180.36031 * 1 2 3 30 30 H 1.09008 * 109.47113 * 300.36097 * 1 2 3 31 31 H 1.09000 * 109.47162 * 60.35639 * 1 2 3 32 32 H 1.09001 * 109.50026 * 294.37636 * 4 2 1 33 33 H 1.08997 * 109.49902 * 54.46769 * 4 2 1 34 34 H 0.96991 * 119.99874 * 24.99996 * 7 5 4 35 35 H 1.08991 * 109.47416 * 300.00417 * 10 8 7 36 36 H 1.09005 * 109.46455 * 60.00472 * 10 8 7 37 37 H 1.09005 * 109.47319 * 300.00461 * 11 10 8 38 38 H 1.08999 * 109.47075 * 60.00308 * 11 10 8 39 39 H 1.08994 * 109.47562 * 89.99772 * 16 15 12 40 40 H 1.09001 * 109.47193 * 210.00063 * 16 15 12 41 41 H 1.09001 * 109.46941 * 329.99697 * 16 15 12 42 42 H 1.09000 * 109.47030 * 60.00052 * 17 15 12 43 43 H 1.09004 * 109.47621 * 179.97438 * 17 15 12 44 44 H 1.09008 * 109.47258 * 300.00163 * 17 15 12 45 45 H 1.08997 * 109.50062 * 181.31436 * 18 5 4 46 46 H 1.08998 * 109.49485 * 301.39001 * 18 5 4 47 47 H 1.08991 * 109.51134 * 185.70835 * 19 18 5 48 48 H 1.09001 * 109.42906 * 65.42307 * 19 18 5 49 49 H 0.96998 * 120.00252 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5674 -0.8480 1.1702 6 1 4.0060 0.1474 1.0994 7 7 4.0651 -1.5157 2.3756 8 6 5.3293 -1.3021 2.7910 9 8 6.0549 -0.5568 2.1672 10 6 5.8411 -1.9885 4.0312 11 6 7.2937 -1.5770 4.2792 12 16 7.9099 -2.4038 5.7717 13 8 7.2571 -1.8975 6.9278 14 8 8.0317 -3.8025 5.5525 15 7 9.4727 -1.8768 5.9205 16 6 9.7673 -0.6665 6.6916 17 6 10.5607 -2.6209 5.2812 18 6 3.9569 -1.6658 -0.0633 19 6 3.4644 -0.9521 -1.3209 20 7 2.0225 -0.6996 -1.1944 21 6 1.1537 -1.1136 -2.1684 22 1 0.1359 -1.3679 -1.9116 23 6 1.5825 -1.2120 -3.4849 24 7 0.9102 -1.9499 -4.3428 25 14 3.1140 -0.2971 -4.0392 26 1 4.2971 -1.1841 -3.9027 27 1 2.9610 0.1092 -5.4593 28 1 3.3012 0.9109 -3.1961 29 1 -0.3634 -1.0276 0.0065 30 1 -0.3634 0.5195 0.8868 31 1 -0.3633 0.5083 -0.8932 32 1 1.7659 -0.1668 2.1369 33 1 1.6029 -1.7252 1.2915 34 1 3.4848 -2.1114 2.8746 35 1 5.2304 -1.6975 4.8858 36 1 5.7870 -3.0689 3.8970 37 1 7.9047 -1.8677 3.4246 38 1 7.3474 -0.4967 4.4135 39 1 9.9510 -0.9342 7.7321 40 1 10.6516 -0.1798 6.2801 41 1 8.9185 0.0151 6.6362 42 1 10.3952 -2.6530 4.2043 43 1 11.5098 -2.1262 5.4878 44 1 10.5868 -3.6369 5.6753 45 1 5.0412 -1.7697 -0.1035 46 1 3.4987 -2.6531 -0.0047 47 1 3.6503 -1.5799 -2.1922 48 1 3.9928 -0.0051 -1.4309 49 1 1.2101 -2.0189 -5.2626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001503013626.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:23 Heat of formation + Delta-G solvation = -110.961795 kcal Electronic energy + Delta-G solvation = -29249.392089 eV Core-core repulsion = 25145.344502 eV Total energy + Delta-G solvation = -4104.047588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.13729 -39.51911 -38.29751 -37.24530 -36.91630 -36.21683 -34.39074 -34.15740 -33.27940 -31.75263 -28.94940 -28.20991 -26.96139 -25.97908 -25.33775 -24.27501 -22.40161 -21.52685 -20.89693 -19.94279 -18.98208 -18.43931 -18.03918 -17.61930 -17.49177 -17.05125 -16.75555 -16.63251 -16.36400 -15.52793 -15.39702 -15.38192 -15.13768 -14.97752 -14.85616 -14.40889 -14.33664 -14.15559 -13.87638 -13.58032 -13.51677 -13.50805 -13.33388 -13.21933 -12.89480 -12.74926 -12.66214 -12.62090 -12.51660 -12.50500 -12.25604 -12.02984 -11.96893 -11.89262 -11.74408 -11.53315 -11.37136 -10.95215 -10.70631 -10.06704 -10.01052 -8.90715 -8.13742 -5.45950 -0.85887 1.27635 1.38684 1.46434 1.56892 1.58470 2.12572 2.41849 2.77418 3.04922 3.09575 3.29249 3.30737 3.70763 3.77341 3.80037 3.87929 3.94193 4.19344 4.22699 4.33347 4.43619 4.45730 4.49732 4.55825 4.58278 4.63277 4.71748 4.72429 4.80189 4.82122 4.92363 4.97553 4.99252 5.00259 5.04392 5.04768 5.07528 5.20712 5.46563 5.49577 5.54315 5.57128 5.92339 6.20772 6.54606 6.93716 7.22233 7.65592 8.06398 9.05565 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.002181 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.771599 B =12837.891331 C =13461.360770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.163 3.837 3 H 0.035 0.965 4 C -0.122 4.122 5 C 0.158 3.842 6 H 0.069 0.931 7 N -0.712 5.712 8 C 0.517 3.483 9 O -0.578 6.578 10 C -0.141 4.141 11 C -0.605 4.605 12 S 2.630 3.370 13 O -0.979 6.979 14 O -0.981 6.981 15 N -1.010 6.010 16 C 0.082 3.918 17 C 0.079 3.921 18 C -0.131 4.131 19 C 0.125 3.875 20 N -0.615 5.615 21 C -0.232 4.232 22 H 0.072 0.928 23 C -0.034 4.034 24 N -0.957 5.957 25 Si 0.934 3.066 26 H -0.283 1.283 27 H -0.313 1.313 28 H -0.266 1.266 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.418 0.582 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.049 0.951 48 H 0.022 0.978 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.771 1.587 25.566 30.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.057 3.943 3 H 0.052 0.948 4 C -0.161 4.161 5 C 0.053 3.947 6 H 0.087 0.913 7 N -0.363 5.363 8 C 0.303 3.697 9 O -0.457 6.457 10 C -0.182 4.182 11 C -0.735 4.735 12 S 2.724 3.276 13 O -0.969 6.969 14 O -0.972 6.972 15 N -0.850 5.850 16 C -0.063 4.063 17 C -0.066 4.066 18 C -0.171 4.171 19 C -0.001 4.001 20 N -0.340 5.340 21 C -0.362 4.362 22 H 0.090 0.910 23 C -0.229 4.229 24 N -0.604 5.604 25 Si 0.765 3.235 26 H -0.210 1.210 27 H -0.242 1.242 28 H -0.191 1.191 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.255 0.745 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.160 0.840 38 H 0.165 0.835 39 H 0.077 0.923 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.122 0.878 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.067 0.933 48 H 0.040 0.960 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.866 1.494 25.605 30.698 hybrid contribution 0.511 0.439 -1.644 1.777 sum 17.377 1.933 23.961 29.662 Atomic orbital electron populations 1.21735 0.94078 1.01485 1.01369 1.20707 0.94630 0.93567 0.85351 0.94751 1.22213 0.92583 1.02423 0.98916 1.20701 0.94949 0.95656 0.83377 0.91293 1.46035 1.13557 1.48725 1.27998 1.20768 0.81612 0.81125 0.86146 1.90703 1.57198 1.39204 1.58637 1.21536 0.94396 1.04000 0.98255 1.30387 1.05201 1.15891 1.22012 1.04392 0.73218 0.73933 0.76025 1.93567 1.75260 1.81771 1.46310 1.93561 1.85498 1.30841 1.87281 1.57229 1.23450 1.38936 1.65408 1.21771 1.03753 0.84945 0.95850 1.21776 0.90819 0.96483 0.97541 1.22159 0.99845 0.99862 0.95247 1.21176 0.84805 0.96972 0.97117 1.44659 1.01974 1.66297 1.21119 1.18925 0.95338 1.35514 0.86381 0.91019 1.25842 1.00368 1.00260 0.96415 1.69927 1.43587 1.41809 1.05052 0.86102 0.81045 0.80521 0.75862 1.21038 1.24232 1.19107 0.93461 0.89905 0.94174 0.88472 0.90838 0.74520 0.84607 0.85197 0.83956 0.83519 0.92280 0.88520 0.90534 0.91242 0.87788 0.92172 0.92381 0.91617 0.93271 0.95970 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 7.94 71.98 0.57 -3.70 16 2 C 0.16 5.74 3.50 44.98 0.16 5.90 16 3 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.12 -3.23 4.84 30.67 0.15 -3.08 16 5 C 0.16 4.47 2.42 45.02 0.11 4.58 16 6 H 0.07 2.21 7.58 -2.39 -0.02 2.19 16 7 N -0.71 -14.76 5.08 -442.39 -2.25 -17.00 16 8 C 0.52 11.47 7.79 87.66 0.68 12.15 16 9 O -0.58 -17.75 15.65 -3.05 -0.05 -17.80 16 10 C -0.14 -1.94 5.71 29.85 0.17 -1.77 16 11 C -0.60 -7.98 5.47 71.98 0.39 -7.59 16 12 S 2.63 39.90 5.38 -56.49 -0.30 39.60 16 13 O -0.98 -19.96 17.09 -127.65 -2.18 -22.14 16 14 O -0.98 -20.90 17.10 -127.65 -2.18 -23.09 16 15 N -1.01 -11.60 3.52 -562.69 -1.98 -13.58 16 16 C 0.08 0.65 10.17 127.77 1.30 1.95 16 17 C 0.08 0.68 10.25 127.77 1.31 1.99 16 18 C -0.13 -4.52 5.64 30.53 0.17 -4.35 16 19 C 0.13 5.40 4.17 86.22 0.36 5.76 16 20 N -0.62 -27.80 2.76 -676.05 -1.86 -29.66 16 21 C -0.23 -12.59 9.04 84.03 0.76 -11.83 16 22 H 0.07 4.13 6.39 -2.91 -0.02 4.11 16 23 C -0.03 -2.00 5.24 84.86 0.44 -1.56 16 24 N -0.96 -59.76 13.97 21.65 0.30 -59.45 16 25 Si 0.93 47.52 24.35 68.60 1.67 49.19 16 26 H -0.28 -13.93 6.63 99.48 0.66 -13.27 16 27 H -0.31 -16.25 7.11 99.48 0.71 -15.54 16 28 H -0.27 -13.15 6.63 99.48 0.66 -12.49 16 29 H 0.05 1.65 7.44 -2.39 -0.02 1.64 16 30 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.04 1.52 7.62 -2.39 -0.02 1.50 16 32 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.42 5.74 8.60 -92.72 -0.80 4.94 16 35 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.14 1.85 8.10 -2.39 -0.02 1.83 16 38 H 0.15 1.74 8.10 -2.39 -0.02 1.72 16 39 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.10 0.32 7.92 -2.39 -0.02 0.30 16 41 H 0.08 0.54 7.79 -2.39 -0.02 0.53 16 42 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.10 0.40 7.79 -2.39 -0.02 0.38 16 44 H 0.06 0.64 7.90 -2.38 -0.02 0.62 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.05 2.37 4.62 -2.39 -0.01 2.36 16 48 H 0.02 0.98 7.04 -2.39 -0.02 0.96 16 49 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -82.11 394.04 -2.20 -84.31 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.05 Total: 11.17 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 6.58 Total: -1.55 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -5.78 Total: -119.69 kcal Atomic # 8 Polarization: -58.61 SS G_CDS: -4.41 Total: -63.03 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.67 Total: 49.19 kcal Atomic # 16 Polarization: 39.90 SS G_CDS: -0.30 Total: 39.60 kcal Total: -82.11 -2.20 -84.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503013626.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.654 kcal (2) G-P(sol) polarization free energy of solvation -82.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds