Wall clock time and date at job start Wed Apr 1 2020 05:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.58597 * 2 1 4 4 C 1.53196 * 109.58409 * 239.57176 * 2 1 3 5 5 C 1.53042 * 109.30973 * 185.57782 * 4 2 1 6 6 H 1.08999 * 109.44982 * 301.35023 * 5 4 2 7 7 N 1.46498 * 109.45756 * 181.38694 * 5 4 2 8 8 C 1.34777 * 119.99768 * 154.93233 * 7 5 4 9 9 O 1.21279 * 120.00179 * 359.97438 * 8 7 5 10 10 C 1.50698 * 119.99917 * 179.97438 * 8 7 5 11 11 C 1.53003 * 109.47483 * 179.97438 * 10 8 7 12 12 S 1.81394 * 109.47326 * 179.97438 * 11 10 8 13 13 O 1.42102 * 110.54431 * 68.38136 * 12 11 10 14 14 O 1.42094 * 110.54498 * 291.62491 * 12 11 10 15 15 N 1.65603 * 104.44862 * 180.02562 * 12 11 10 16 16 C 1.46499 * 120.00256 * 90.00001 * 15 12 11 17 17 C 1.46503 * 120.00094 * 269.72563 * 15 12 11 18 18 C 1.53035 * 109.53785 * 61.36662 * 5 4 2 19 19 C 1.53193 * 109.31537 * 298.63672 * 18 5 4 20 20 N 1.46920 * 108.77586 * 54.63106 * 19 18 5 21 21 C 1.36938 * 120.62957 * 126.41966 * 20 19 18 22 22 H 1.08000 * 119.99826 * 209.51447 * 21 20 19 23 23 C 1.38810 * 120.00162 * 29.50920 * 21 20 19 24 24 N 1.31616 * 120.00118 * 15.61854 * 23 21 20 25 25 Si 1.86804 * 119.99997 * 195.61632 * 23 21 20 26 26 H 1.48506 * 109.46902 * 94.72368 * 25 23 21 27 27 H 1.48498 * 109.46941 * 214.72255 * 25 23 21 28 28 H 1.48495 * 109.47220 * 334.72571 * 25 23 21 29 29 H 1.09000 * 109.47167 * 299.71719 * 1 2 3 30 30 H 1.09008 * 109.47085 * 59.71429 * 1 2 3 31 31 H 1.08996 * 109.47366 * 179.71334 * 1 2 3 32 32 H 1.09003 * 109.49335 * 65.63299 * 4 2 1 33 33 H 1.08991 * 109.49988 * 305.53406 * 4 2 1 34 34 H 0.97005 * 120.00063 * 334.93734 * 7 5 4 35 35 H 1.09004 * 109.46979 * 60.00104 * 10 8 7 36 36 H 1.09007 * 109.47406 * 300.00190 * 10 8 7 37 37 H 1.09004 * 109.46880 * 60.00103 * 11 10 8 38 38 H 1.09007 * 109.47003 * 300.00496 * 11 10 8 39 39 H 1.09000 * 109.47475 * 179.72408 * 16 15 12 40 40 H 1.09001 * 109.46824 * 299.72549 * 16 15 12 41 41 H 1.09005 * 109.46875 * 59.72572 * 16 15 12 42 42 H 1.09000 * 109.47336 * 270.27945 * 17 15 12 43 43 H 1.09010 * 109.46800 * 30.27147 * 17 15 12 44 44 H 1.08997 * 109.47489 * 150.27069 * 17 15 12 45 45 H 1.08999 * 109.49703 * 58.58535 * 18 5 4 46 46 H 1.09002 * 109.49952 * 178.64692 * 18 5 4 47 47 H 1.08999 * 109.58716 * 174.42323 * 19 18 5 48 48 H 1.09002 * 109.58322 * 294.84393 * 19 18 5 49 49 H 0.96992 * 120.00579 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2445 5 6 3.5675 -0.8495 -1.1691 6 1 4.0059 0.1460 -1.0994 7 7 4.0651 -1.5188 -2.3735 8 6 5.3290 -1.3046 -2.7899 9 8 6.0540 -0.5575 -2.1679 10 6 5.8411 -1.9935 -4.0285 11 6 7.2931 -1.5808 -4.2783 12 16 7.9097 -2.4106 -5.7688 13 8 7.2560 -1.9080 -6.9260 14 8 8.0334 -3.8086 -5.5462 15 7 9.4719 -1.8821 -5.9196 16 6 10.5611 -2.6231 -5.2789 17 6 9.7653 -0.6767 -6.6989 18 6 3.9569 -1.6656 0.0655 19 6 3.4650 -0.9454 1.3249 20 7 2.0226 -0.6981 1.1953 21 6 1.1537 -1.1100 2.1703 22 1 0.1382 -1.3725 1.9129 23 6 1.5782 -1.1901 3.4895 24 7 2.6908 -0.5927 3.8603 25 14 0.5703 -2.1460 4.7386 26 1 1.1011 -3.5285 4.8492 27 1 0.6558 -1.4755 6.0608 28 1 -0.8471 -2.1938 4.2985 29 1 -0.3633 0.5094 0.8925 30 1 -0.3634 0.5183 -0.8875 31 1 -0.3634 -1.0276 -0.0051 32 1 1.7660 -0.1694 -2.1366 33 1 1.6029 -1.7269 -1.2892 34 1 3.4850 -2.1160 -2.8713 35 1 5.2296 -1.7053 -4.8837 36 1 5.7884 -3.0737 -3.8917 37 1 7.9048 -1.8687 -3.4232 38 1 7.3454 -0.5007 -4.4153 39 1 11.5100 -2.1308 -5.4916 40 1 10.3985 -2.6485 -4.2013 41 1 10.5851 -3.6415 -5.6669 42 1 9.9457 -0.9509 -7.7383 43 1 8.9171 0.0060 -6.6454 44 1 10.6511 -0.1882 -6.2930 45 1 3.4983 -2.6528 0.0085 46 1 5.0411 -1.7700 0.1055 47 1 3.6518 -1.5691 2.1990 48 1 3.9903 0.0037 1.4317 49 1 2.9872 -0.6483 4.7821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001503013627.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:28 Heat of formation + Delta-G solvation = -86.913050 kcal Electronic energy + Delta-G solvation = -29140.714644 eV Core-core repulsion = 25037.709888 eV Total energy + Delta-G solvation = -4103.004756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -39.88607 -37.76575 -37.50634 -36.64438 -36.22073 -34.68159 -33.46651 -32.42021 -31.30290 -29.55840 -28.52964 -26.51924 -25.80815 -25.05004 -24.33376 -22.04347 -21.03778 -20.12448 -19.27296 -19.26270 -18.17940 -17.28118 -16.81721 -16.52413 -16.15893 -15.88721 -15.74260 -15.10306 -14.81644 -14.78249 -14.04665 -13.86819 -13.80257 -13.61997 -13.54635 -13.33323 -13.07058 -12.91711 -12.77481 -12.68710 -12.67088 -12.42052 -12.09689 -11.93676 -11.83915 -11.62481 -11.25044 -11.22114 -11.14100 -10.93708 -10.91852 -10.69191 -10.32864 -10.18307 -10.07258 -9.91488 -9.76567 -9.51950 -9.37272 -8.77351 -8.44751 -6.66373 -5.78884 -3.23200 -0.16731 2.19827 2.63826 3.17127 3.36600 3.43696 3.44885 3.50552 3.77184 4.01716 4.26244 4.42181 4.47565 4.66678 4.86757 4.95502 5.01754 5.12623 5.12955 5.24510 5.33970 5.34829 5.37670 5.39653 5.42153 5.52175 5.55074 5.74156 5.95452 6.01777 6.12431 6.21092 6.29173 6.37438 6.39578 6.47730 6.60750 6.75208 6.84262 7.00679 7.07401 7.35173 7.59798 7.66868 7.81320 8.27910 8.45365 9.20673 9.84177 10.41285 11.29859 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023367 B = 0.002031 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.958196 B =13781.480230 C =14273.888141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.149 3.851 6 H 0.082 0.918 7 N -0.723 5.723 8 C 0.518 3.482 9 O -0.536 6.536 10 C -0.137 4.137 11 C -0.610 4.610 12 S 2.611 3.389 13 O -0.952 6.952 14 O -0.951 6.951 15 N -1.009 6.009 16 C 0.089 3.911 17 C 0.093 3.907 18 C -0.147 4.147 19 C 0.175 3.825 20 N -0.588 5.588 21 C -0.251 4.251 22 H 0.070 0.930 23 C 0.002 3.998 24 N -0.902 5.902 25 Si 0.901 3.099 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.089 0.911 48 H 0.020 0.980 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.057 -2.086 -20.914 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.044 0.956 4 C -0.174 4.174 5 C 0.046 3.954 6 H 0.100 0.900 7 N -0.373 5.373 8 C 0.302 3.698 9 O -0.413 6.413 10 C -0.178 4.178 11 C -0.740 4.740 12 S 2.704 3.296 13 O -0.943 6.943 14 O -0.941 6.941 15 N -0.848 5.848 16 C -0.057 4.057 17 C -0.053 4.053 18 C -0.187 4.187 19 C 0.049 3.951 20 N -0.311 5.311 21 C -0.381 4.381 22 H 0.088 0.912 23 C -0.196 4.196 24 N -0.547 5.547 25 Si 0.731 3.269 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.230 0.770 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.107 0.893 48 H 0.038 0.962 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.244 -2.104 -20.864 24.283 hybrid contribution -0.484 -0.293 1.093 1.231 sum 11.760 -2.397 -19.771 23.129 Atomic orbital electron populations 1.21795 0.95715 1.01401 1.00381 1.20361 0.93123 0.93560 0.86620 0.95563 1.22385 0.93582 1.01724 0.99715 1.21085 0.94365 0.96749 0.83186 0.90017 1.46330 1.13085 1.48535 1.29349 1.20104 0.82255 0.81977 0.85507 1.90716 1.56182 1.37266 1.57105 1.21385 0.93845 1.03038 0.99567 1.30432 1.05482 1.15534 1.22510 1.05127 0.73105 0.74854 0.76520 1.93604 1.74221 1.81631 1.44803 1.93600 1.84886 1.28769 1.86894 1.57361 1.23960 1.38690 1.64810 1.21575 0.90175 0.96771 0.97131 1.21542 1.02511 0.85538 0.95673 1.22577 0.99691 0.99657 0.96816 1.20734 0.83287 0.97244 0.93839 1.44170 1.02971 1.64986 1.18971 1.19181 0.95064 1.37726 0.86106 0.91193 1.25113 0.97915 0.99585 0.97027 1.70021 1.24030 1.43811 1.16795 0.86296 0.79788 0.79759 0.81048 1.21547 1.21824 1.20392 0.91816 0.94298 0.92780 0.92636 0.91714 0.76964 0.87466 0.87379 0.84177 0.84263 0.90101 0.92062 0.91272 0.92211 0.90930 0.90802 0.92597 0.92943 0.89307 0.96190 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.95 37.16 0.30 -2.15 16 2 C 0.17 3.41 3.50 -67.60 -0.24 3.17 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.17 4.84 -26.61 -0.13 -2.30 16 5 C 0.15 2.51 2.42 -67.89 -0.16 2.35 16 6 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 7 N -0.72 -9.52 5.08 -53.77 -0.27 -9.79 16 8 C 0.52 7.01 7.79 -10.99 -0.09 6.93 16 9 O -0.54 -9.38 15.64 5.56 0.09 -9.30 16 10 C -0.14 -1.27 5.71 -27.88 -0.16 -1.42 16 11 C -0.61 -5.16 5.47 37.16 0.20 -4.96 16 12 S 2.61 23.27 5.38 -107.50 -0.58 22.69 16 13 O -0.95 -10.89 17.09 -57.54 -0.98 -11.88 16 14 O -0.95 -11.14 17.10 -57.54 -0.98 -12.12 16 15 N -1.01 -7.11 3.52 -129.20 -0.45 -7.57 16 16 C 0.09 0.50 10.26 59.85 0.61 1.11 16 17 C 0.09 0.50 10.16 59.85 0.61 1.11 16 18 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16 19 C 0.18 4.18 5.28 -3.71 -0.02 4.16 16 20 N -0.59 -14.17 2.99 -164.78 -0.49 -14.67 16 21 C -0.25 -6.60 8.58 -15.06 -0.13 -6.73 16 22 H 0.07 1.79 6.23 -52.49 -0.33 1.46 16 23 C 0.00 0.06 4.94 -17.43 -0.09 -0.02 16 24 N -0.90 -26.00 11.21 55.49 0.62 -25.38 16 25 Si 0.90 21.42 29.58 -169.99 -5.03 16.39 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 30 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 31 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.40 3.96 8.60 -40.82 -0.35 3.60 16 35 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.14 1.15 8.10 -51.92 -0.42 0.73 16 38 H 0.14 1.09 8.10 -51.92 -0.42 0.67 16 39 H 0.08 0.28 7.79 -51.93 -0.40 -0.12 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.36 7.79 -51.92 -0.40 -0.05 16 44 H 0.07 0.25 7.92 -51.93 -0.41 -0.16 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.09 2.37 6.13 -51.93 -0.32 2.05 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -35.98 400.51 -9.92 -45.90 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.43 Total: 1.45 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 0.56 Total: -1.77 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.60 Total: -57.41 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -1.88 Total: -33.30 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Atomic # 16 Polarization: 23.27 SS G_CDS: -0.58 Total: 22.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.98 -9.92 -45.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503013627.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.015 kcal (2) G-P(sol) polarization free energy of solvation -35.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds