Wall clock time and date at job start Wed Apr 1 2020 05:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.58131 * 2 1 4 4 C 1.53190 * 109.58476 * 239.71651 * 2 1 3 5 5 H 1.09002 * 109.49885 * 305.55860 * 4 2 1 6 6 N 1.46493 * 109.50065 * 65.62669 * 4 2 1 7 7 C 1.34774 * 120.00400 * 204.99739 * 6 4 2 8 8 O 1.21286 * 120.00059 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00523 * 180.02562 * 7 6 4 10 10 C 1.53001 * 109.47162 * 204.99999 * 9 7 6 11 11 C 1.53003 * 109.47478 * 84.99568 * 9 7 6 12 12 N 1.46506 * 109.46645 * 324.99763 * 9 7 6 13 13 S 1.65605 * 119.99653 * 157.11678 * 12 9 7 14 14 C 1.81397 * 104.44950 * 60.03509 * 13 12 9 15 15 O 1.42099 * 104.27099 * 176.10478 * 13 12 9 16 16 O 1.42096 * 104.27743 * 303.96085 * 13 12 9 17 17 C 1.53042 * 109.31095 * 185.57999 * 4 2 1 18 18 C 1.53042 * 109.53533 * 61.36364 * 17 4 2 19 19 C 1.53188 * 109.31394 * 298.63464 * 18 17 4 20 20 N 1.46920 * 108.77505 * 54.63570 * 19 18 17 21 21 C 1.36940 * 120.62834 * 126.41339 * 20 19 18 22 22 H 1.08001 * 119.99912 * 212.29991 * 21 20 19 23 23 C 1.38807 * 120.00274 * 32.29970 * 21 20 19 24 24 N 1.31617 * 119.99898 * 10.94542 * 23 21 20 25 25 Si 1.86801 * 120.00166 * 190.95213 * 23 21 20 26 26 H 1.48499 * 109.47246 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47345 * 119.99947 * 25 23 21 28 28 H 1.48503 * 109.47002 * 239.99679 * 25 23 21 29 29 H 1.08994 * 109.47336 * 180.27882 * 1 2 3 30 30 H 1.08990 * 109.47431 * 300.28722 * 1 2 3 31 31 H 1.09005 * 109.46739 * 60.28225 * 1 2 3 32 32 H 0.97005 * 120.00040 * 25.00241 * 6 4 2 33 33 H 1.09001 * 109.47027 * 174.11246 * 10 9 7 34 34 H 1.08996 * 109.47056 * 294.11143 * 10 9 7 35 35 H 1.09000 * 109.46866 * 54.11490 * 10 9 7 36 36 H 1.08995 * 109.46955 * 300.00707 * 11 9 7 37 37 H 1.09001 * 109.46417 * 60.00426 * 11 9 7 38 38 H 1.08990 * 109.47008 * 180.02562 * 11 9 7 39 39 H 0.97001 * 120.00151 * 337.12345 * 12 9 7 40 40 H 1.09004 * 109.46753 * 51.57978 * 14 13 12 41 41 H 1.08996 * 109.47006 * 171.58197 * 14 13 12 42 42 H 1.08998 * 109.47087 * 291.58608 * 14 13 12 43 43 H 1.09002 * 109.46021 * 181.38219 * 17 4 2 44 44 H 1.09001 * 109.45747 * 301.34698 * 17 4 2 45 45 H 1.09007 * 109.49217 * 178.68654 * 18 17 4 46 46 H 1.08996 * 109.52511 * 58.60821 * 18 17 4 47 47 H 1.09002 * 109.58957 * 294.84862 * 19 18 17 48 48 H 1.09008 * 109.58570 * 174.42597 * 19 18 17 49 49 H 0.97004 * 120.00553 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.6026 -1.7235 -1.2938 6 7 1.6706 0.0297 -2.4434 7 6 1.5473 -0.6003 -3.6284 8 8 1.7446 -1.7947 -3.7037 9 6 1.1641 0.1790 -4.8601 10 6 0.4992 -0.7581 -5.8703 11 6 2.4178 0.7952 -5.4843 12 7 0.2278 1.2441 -4.4922 13 16 0.0692 2.5780 -5.4608 14 6 -0.4778 1.9149 -7.0582 15 8 -0.9701 3.3317 -4.8516 16 8 1.3882 3.0968 -5.5615 17 6 3.5675 -0.8466 -1.1712 18 6 3.9568 -1.6658 0.0615 19 6 3.4650 -0.9487 1.3226 20 7 2.0225 -0.7010 1.1936 21 6 1.1537 -1.1154 2.1676 22 1 0.1518 -1.4202 1.9034 23 6 1.5605 -1.1436 3.4944 24 7 2.6941 -0.5754 3.8473 25 14 0.4994 -1.9881 4.7790 26 1 -0.7152 -2.5440 4.1301 27 1 1.2702 -3.0881 5.4124 28 1 0.0994 -1.0031 5.8158 29 1 -0.3634 -1.0276 0.0050 30 1 -0.3634 0.5182 0.8873 31 1 -0.3633 0.5095 -0.8926 32 1 1.5124 0.9849 -2.3833 33 1 0.1286 -0.1776 -6.7151 34 1 1.2277 -1.4882 -6.2228 35 1 -0.3324 -1.2761 -5.3926 36 1 2.8915 1.4627 -4.7646 37 1 3.1143 0.0026 -5.7580 38 1 2.1406 1.3592 -6.3748 39 1 -0.2990 1.1681 -3.6813 40 1 -1.3413 1.2673 -6.9062 41 1 -0.7524 2.7377 -7.7183 42 1 0.3315 1.3413 -7.5098 43 1 3.9378 -1.3423 -2.0685 44 1 4.0061 0.1487 -1.0990 45 1 5.0412 -1.7697 0.1015 46 1 3.4987 -2.6531 0.0023 47 1 3.9902 0.0002 1.4318 48 1 3.6517 -1.5746 2.1953 49 1 2.9783 -0.5948 4.7746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507381532.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:02 Heat of formation + Delta-G solvation = -79.909870 kcal Electronic energy + Delta-G solvation = -30940.248476 eV Core-core repulsion = 26837.547400 eV Total energy + Delta-G solvation = -4102.701075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.40525 -38.12210 -37.48491 -36.46814 -36.19444 -34.40071 -32.57028 -31.66964 -31.02702 -30.00443 -29.21391 -27.57829 -26.34188 -25.06474 -23.85898 -21.71078 -20.72121 -20.16853 -19.56038 -19.42934 -18.42521 -17.43044 -16.68202 -16.37698 -16.01451 -15.77507 -15.16905 -14.95288 -14.67658 -14.42703 -14.05586 -13.80668 -13.74366 -13.67993 -13.51726 -13.24350 -13.17510 -12.81426 -12.62331 -12.55726 -12.42325 -12.22392 -11.98521 -11.93003 -11.72208 -11.56393 -11.49426 -11.33786 -11.13217 -10.92704 -10.78743 -10.58162 -10.32384 -10.22340 -10.10797 -10.03022 -9.86171 -9.59699 -9.35629 -8.72945 -8.48291 -6.64301 -5.80807 -3.29644 -0.11912 2.15997 2.73208 3.15002 3.35584 3.42593 3.43872 3.45373 3.81184 4.19059 4.32366 4.45994 4.46917 4.57639 4.70478 4.84772 5.09886 5.19221 5.28684 5.36532 5.41364 5.46207 5.50557 5.56793 5.65914 5.77467 5.86551 5.95068 5.98882 6.06514 6.19378 6.30246 6.35659 6.50176 6.50687 6.59913 6.68840 6.73980 6.83373 6.97498 7.04571 7.39511 7.64208 7.67902 7.80181 8.27868 8.45577 9.19367 9.80407 10.38257 11.27594 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.002950 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.825045 B = 9490.139157 C =10076.503011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.028 0.972 4 C 0.128 3.872 5 H 0.087 0.913 6 N -0.710 5.710 7 C 0.520 3.480 8 O -0.532 6.532 9 C 0.160 3.840 10 C -0.167 4.167 11 C -0.171 4.171 12 N -1.112 6.112 13 S 2.614 3.386 14 C -0.680 4.680 15 O -0.956 6.956 16 O -0.948 6.948 17 C -0.117 4.117 18 C -0.140 4.140 19 C 0.170 3.830 20 N -0.581 5.581 21 C -0.253 4.253 22 H 0.069 0.931 23 C 0.006 3.994 24 N -0.902 5.902 25 Si 0.903 3.097 26 H -0.277 1.277 27 H -0.289 1.289 28 H -0.290 1.290 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.398 0.602 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.423 0.577 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.019 0.981 48 H 0.088 0.912 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.817 3.928 -22.824 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.046 0.954 4 C 0.023 3.977 5 H 0.105 0.895 6 N -0.360 5.360 7 C 0.302 3.698 8 O -0.408 6.408 9 C 0.068 3.932 10 C -0.226 4.226 11 C -0.229 4.229 12 N -0.874 5.874 13 S 2.705 3.295 14 C -0.830 4.830 15 O -0.946 6.946 16 O -0.938 6.938 17 C -0.155 4.155 18 C -0.180 4.180 19 C 0.045 3.955 20 N -0.305 5.305 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.192 4.192 24 N -0.546 5.546 25 Si 0.733 3.267 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.217 1.217 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.233 0.767 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.259 0.741 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.037 0.963 48 H 0.106 0.894 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.341 3.971 -22.573 23.162 hybrid contribution -0.937 -0.521 0.642 1.250 sum -4.279 3.450 -21.931 22.610 Atomic orbital electron populations 1.21821 0.95656 1.01671 1.00247 1.20584 0.93261 0.93637 0.86702 0.95422 1.21870 0.95300 0.96811 0.83719 0.89461 1.46194 1.69032 1.12471 1.08342 1.20157 0.77726 0.87690 0.84190 1.90732 1.50549 1.14380 1.85134 1.20528 0.90219 0.87746 0.94721 1.22439 1.02458 0.99794 0.97898 1.22528 0.96083 1.01853 1.02443 1.55780 1.54105 1.38252 1.39218 1.04835 0.74850 0.73245 0.76555 1.30799 1.13488 1.14251 1.24424 1.93637 1.59159 1.67866 1.73987 1.93674 1.36635 1.77171 1.86340 1.21760 0.95239 1.00164 0.98376 1.22190 0.99238 0.99647 0.96921 1.20833 0.83134 0.97190 0.94334 1.44002 1.03133 1.64935 1.18407 1.19177 0.96177 1.37292 0.85596 0.91312 1.25180 0.97595 0.99230 0.97246 1.69997 1.22581 1.45373 1.16657 0.86215 0.79912 0.78909 0.81676 1.20212 1.21578 1.21671 0.92647 0.91641 0.94445 0.76730 0.91289 0.89739 0.90912 0.89401 0.90087 0.90558 0.74139 0.84822 0.85188 0.84804 0.93180 0.92670 0.93011 0.92566 0.96264 0.89425 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.86 37.16 0.29 -2.16 16 2 C 0.17 3.27 3.03 -67.60 -0.21 3.07 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.13 2.24 2.00 -67.81 -0.14 2.10 16 5 H 0.09 1.74 7.58 -51.93 -0.39 1.34 16 6 N -0.71 -9.76 4.33 -53.69 -0.23 -9.99 16 7 C 0.52 6.89 6.57 -10.99 -0.07 6.82 16 8 O -0.53 -8.94 15.87 5.55 0.09 -8.85 16 9 C 0.16 1.46 1.07 -132.96 -0.14 1.32 16 10 C -0.17 -1.24 8.08 37.16 0.30 -0.94 16 11 C -0.17 -1.48 7.06 37.16 0.26 -1.22 16 12 N -1.11 -8.71 4.82 -0.40 0.00 -8.71 16 13 S 2.61 19.83 5.63 -107.50 -0.60 19.22 16 14 C -0.68 -2.53 9.04 101.05 0.91 -1.62 16 15 O -0.96 -10.81 18.08 -57.54 -1.04 -11.85 16 16 O -0.95 -9.76 14.50 -57.54 -0.83 -10.60 16 17 C -0.12 -2.05 5.46 -26.69 -0.15 -2.20 16 18 C -0.14 -2.72 6.08 -26.61 -0.16 -2.88 16 19 C 0.17 3.99 5.25 -3.72 -0.02 3.97 16 20 N -0.58 -13.95 2.98 -164.78 -0.49 -14.44 16 21 C -0.25 -6.64 8.52 -15.06 -0.13 -6.76 16 22 H 0.07 1.77 6.29 -52.49 -0.33 1.44 16 23 C 0.01 0.17 5.03 -17.43 -0.09 0.09 16 24 N -0.90 -25.58 11.14 55.49 0.62 -24.96 16 25 Si 0.90 21.35 29.57 -169.99 -5.03 16.32 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.05 1.04 7.39 -51.93 -0.38 0.66 16 30 H 0.06 1.27 7.69 -51.93 -0.40 0.87 16 31 H 0.04 0.54 7.79 -51.93 -0.40 0.13 16 32 H 0.40 4.76 7.78 -40.82 -0.32 4.44 16 33 H 0.07 0.30 4.21 -51.93 -0.22 0.08 16 34 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.88 7.66 -51.93 -0.40 0.48 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.51 5.17 -51.93 -0.27 0.24 16 39 H 0.42 3.20 8.22 -34.48 -0.28 2.92 16 40 H 0.13 0.34 7.86 -51.92 -0.41 -0.07 16 41 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.13 0.33 5.84 -51.93 -0.30 0.03 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.09 2.30 6.19 -51.92 -0.32 1.98 16 49 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -34.58 382.58 -8.88 -43.46 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.79 Total: 5.06 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 0.67 Total: -0.42 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.11 Total: -58.11 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -1.79 Total: -31.30 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Atomic # 16 Polarization: 19.83 SS G_CDS: -0.60 Total: 19.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.58 -8.88 -43.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507381532.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.454 kcal (2) G-P(sol) polarization free energy of solvation -34.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds