Wall clock time and date at job start Wed Apr 1 2020 05:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.58131 * 2 1 4 4 C 1.53190 * 109.58476 * 239.71651 * 2 1 3 5 5 H 1.09002 * 109.49885 * 305.55860 * 4 2 1 6 6 N 1.46493 * 109.50065 * 65.62669 * 4 2 1 7 7 C 1.34774 * 120.00400 * 204.99739 * 6 4 2 8 8 O 1.21286 * 120.00059 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00523 * 180.02562 * 7 6 4 10 10 C 1.53001 * 109.47162 * 204.99999 * 9 7 6 11 11 C 1.53003 * 109.47478 * 84.99568 * 9 7 6 12 12 N 1.46506 * 109.46645 * 324.99763 * 9 7 6 13 13 S 1.65605 * 119.99653 * 157.11678 * 12 9 7 14 14 C 1.81397 * 104.44950 * 60.03509 * 13 12 9 15 15 O 1.42099 * 104.27099 * 176.10478 * 13 12 9 16 16 O 1.42096 * 104.27743 * 303.96085 * 13 12 9 17 17 C 1.53042 * 109.31095 * 185.57999 * 4 2 1 18 18 C 1.53042 * 109.53533 * 61.36364 * 17 4 2 19 19 C 1.53188 * 109.31394 * 298.63464 * 18 17 4 20 20 N 1.46920 * 108.77505 * 54.63570 * 19 18 17 21 21 C 1.36940 * 120.62834 * 126.41339 * 20 19 18 22 22 H 1.08001 * 119.99912 * 212.29991 * 21 20 19 23 23 C 1.38807 * 120.00274 * 32.29970 * 21 20 19 24 24 N 1.31617 * 119.99898 * 10.94542 * 23 21 20 25 25 Si 1.86801 * 120.00166 * 190.95213 * 23 21 20 26 26 H 1.48499 * 109.47246 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47345 * 119.99947 * 25 23 21 28 28 H 1.48503 * 109.47002 * 239.99679 * 25 23 21 29 29 H 1.08994 * 109.47336 * 180.27882 * 1 2 3 30 30 H 1.08990 * 109.47431 * 300.28722 * 1 2 3 31 31 H 1.09005 * 109.46739 * 60.28225 * 1 2 3 32 32 H 0.97005 * 120.00040 * 25.00241 * 6 4 2 33 33 H 1.09001 * 109.47027 * 174.11246 * 10 9 7 34 34 H 1.08996 * 109.47056 * 294.11143 * 10 9 7 35 35 H 1.09000 * 109.46866 * 54.11490 * 10 9 7 36 36 H 1.08995 * 109.46955 * 300.00707 * 11 9 7 37 37 H 1.09001 * 109.46417 * 60.00426 * 11 9 7 38 38 H 1.08990 * 109.47008 * 180.02562 * 11 9 7 39 39 H 0.97001 * 120.00151 * 337.12345 * 12 9 7 40 40 H 1.09004 * 109.46753 * 51.57978 * 14 13 12 41 41 H 1.08996 * 109.47006 * 171.58197 * 14 13 12 42 42 H 1.08998 * 109.47087 * 291.58608 * 14 13 12 43 43 H 1.09002 * 109.46021 * 181.38219 * 17 4 2 44 44 H 1.09001 * 109.45747 * 301.34698 * 17 4 2 45 45 H 1.09007 * 109.49217 * 178.68654 * 18 17 4 46 46 H 1.08996 * 109.52511 * 58.60821 * 18 17 4 47 47 H 1.09002 * 109.58957 * 294.84862 * 19 18 17 48 48 H 1.09008 * 109.58570 * 174.42597 * 19 18 17 49 49 H 0.97004 * 120.00553 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.6026 -1.7235 -1.2938 6 7 1.6706 0.0297 -2.4434 7 6 1.5473 -0.6003 -3.6284 8 8 1.7446 -1.7947 -3.7037 9 6 1.1641 0.1790 -4.8601 10 6 0.4992 -0.7581 -5.8703 11 6 2.4178 0.7952 -5.4843 12 7 0.2278 1.2441 -4.4922 13 16 0.0692 2.5780 -5.4608 14 6 -0.4778 1.9149 -7.0582 15 8 -0.9701 3.3317 -4.8516 16 8 1.3882 3.0968 -5.5615 17 6 3.5675 -0.8466 -1.1712 18 6 3.9568 -1.6658 0.0615 19 6 3.4650 -0.9487 1.3226 20 7 2.0225 -0.7010 1.1936 21 6 1.1537 -1.1154 2.1676 22 1 0.1518 -1.4202 1.9034 23 6 1.5605 -1.1436 3.4944 24 7 2.6941 -0.5754 3.8473 25 14 0.4994 -1.9881 4.7790 26 1 -0.7152 -2.5440 4.1301 27 1 1.2702 -3.0881 5.4124 28 1 0.0994 -1.0031 5.8158 29 1 -0.3634 -1.0276 0.0050 30 1 -0.3634 0.5182 0.8873 31 1 -0.3633 0.5095 -0.8926 32 1 1.5124 0.9849 -2.3833 33 1 0.1286 -0.1776 -6.7151 34 1 1.2277 -1.4882 -6.2228 35 1 -0.3324 -1.2761 -5.3926 36 1 2.8915 1.4627 -4.7646 37 1 3.1143 0.0026 -5.7580 38 1 2.1406 1.3592 -6.3748 39 1 -0.2990 1.1681 -3.6813 40 1 -1.3413 1.2673 -6.9062 41 1 -0.7524 2.7377 -7.7183 42 1 0.3315 1.3413 -7.5098 43 1 3.9378 -1.3423 -2.0685 44 1 4.0061 0.1487 -1.0990 45 1 5.0412 -1.7697 0.1015 46 1 3.4987 -2.6531 0.0023 47 1 3.9902 0.0002 1.4318 48 1 3.6517 -1.5746 2.1953 49 1 2.9783 -0.5948 4.7746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507381532.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:01 Heat of formation + Delta-G solvation = -107.295779 kcal Electronic energy + Delta-G solvation = -30941.436018 eV Core-core repulsion = 26837.547400 eV Total energy + Delta-G solvation = -4103.888617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.49958 -39.55013 -38.29980 -37.31503 -36.90969 -35.93817 -34.23401 -33.39064 -31.64382 -31.01923 -30.28578 -28.19263 -27.94474 -26.89701 -25.03963 -23.17833 -22.33169 -21.31372 -20.88534 -20.16376 -19.35809 -18.36141 -18.05450 -17.40783 -17.15466 -16.79302 -16.64410 -16.09235 -15.71189 -15.63267 -15.40517 -15.20459 -14.94751 -14.61207 -14.49216 -14.31119 -14.09853 -13.98760 -13.77910 -13.37464 -13.33313 -13.25354 -13.13803 -12.92497 -12.84308 -12.71302 -12.57404 -12.54519 -12.48188 -12.39736 -12.20564 -11.99929 -11.87065 -11.81970 -11.77010 -11.61485 -11.20277 -10.90080 -10.54837 -10.52619 -10.03285 -8.61257 -7.85562 -5.36371 -0.66252 1.39397 1.45861 1.48160 1.57567 1.83768 2.05932 2.52489 2.89611 3.30016 3.30992 3.39923 3.64148 3.76079 3.86638 3.93651 4.04621 4.05150 4.15788 4.21441 4.28684 4.35786 4.51446 4.61331 4.62332 4.71251 4.77642 4.83625 4.88422 4.90512 4.94853 5.03546 5.08635 5.13396 5.21152 5.26499 5.32222 5.35043 5.45193 5.48650 5.58817 5.70526 5.76393 5.86090 6.43337 6.53193 7.16141 7.20085 7.85487 8.38650 9.21191 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.002950 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.825045 B = 9490.139157 C =10076.503011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.162 3.838 3 H 0.027 0.973 4 C 0.145 3.855 5 H 0.064 0.936 6 N -0.706 5.706 7 C 0.519 3.481 8 O -0.567 6.567 9 C 0.172 3.828 10 C -0.168 4.168 11 C -0.175 4.175 12 N -1.113 6.113 13 S 2.615 3.385 14 C -0.662 4.662 15 O -0.998 6.998 16 O -0.982 6.982 17 C -0.110 4.110 18 C -0.129 4.129 19 C 0.177 3.823 20 N -0.600 5.600 21 C -0.253 4.253 22 H 0.072 0.928 23 C -0.047 4.047 24 N -0.934 5.934 25 Si 0.963 3.037 26 H -0.267 1.267 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.409 0.591 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.423 0.577 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.046 0.954 47 H 0.000 1.000 48 H 0.054 0.946 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 3.979 -26.121 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 H 0.045 0.955 4 C 0.039 3.961 5 H 0.083 0.917 6 N -0.356 5.356 7 C 0.303 3.697 8 O -0.444 6.444 9 C 0.080 3.920 10 C -0.227 4.227 11 C -0.233 4.233 12 N -0.873 5.873 13 S 2.712 3.288 14 C -0.816 4.816 15 O -0.989 6.989 16 O -0.972 6.972 17 C -0.148 4.148 18 C -0.168 4.168 19 C 0.052 3.948 20 N -0.324 5.324 21 C -0.383 4.383 22 H 0.089 0.911 23 C -0.243 4.243 24 N -0.580 5.580 25 Si 0.792 3.208 26 H -0.191 1.191 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.245 0.755 33 H 0.124 0.876 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.259 0.741 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.174 0.826 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.065 0.935 47 H 0.019 0.981 48 H 0.072 0.928 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.598 4.058 -25.871 26.588 hybrid contribution -0.560 -0.521 1.550 1.728 sum -5.158 3.537 -24.321 25.112 Atomic orbital electron populations 1.21739 0.94299 1.01250 1.01295 1.20741 0.94457 0.93287 0.86034 0.95534 1.21338 0.94930 0.95659 0.84195 0.91733 1.46033 1.69204 1.12760 1.07644 1.20913 0.76420 0.87510 0.84826 1.90719 1.51886 1.16129 1.85717 1.20444 0.90986 0.87870 0.92725 1.22516 1.02023 0.99774 0.98377 1.22601 0.95822 1.01893 1.02972 1.55693 1.53939 1.37741 1.39935 1.04567 0.73622 0.72834 0.77764 1.30630 1.14975 1.15515 1.20439 1.93587 1.59967 1.69300 1.76032 1.93634 1.38212 1.78115 1.87197 1.21689 0.95379 1.00180 0.97601 1.22015 1.00286 0.98781 0.95765 1.20615 0.83251 0.95951 0.95017 1.44240 1.03104 1.65690 1.19340 1.19459 0.96443 1.36228 0.86212 0.91079 1.25877 0.98854 1.00442 0.99113 1.70147 1.24202 1.47154 1.16539 0.85266 0.78689 0.77614 0.79247 1.19087 1.21951 1.21952 0.93683 0.93386 0.90620 0.75506 0.87622 0.90122 0.91519 0.90969 0.89677 0.88182 0.74090 0.82676 0.82990 0.82641 0.92225 0.92024 0.91025 0.93487 0.98144 0.92773 0.94230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 7.86 71.98 0.57 -4.00 16 2 C 0.16 6.39 3.03 44.98 0.14 6.52 16 3 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 4 C 0.15 5.01 2.00 45.07 0.09 5.10 16 5 H 0.06 2.57 7.58 -2.39 -0.02 2.55 16 6 N -0.71 -18.60 4.33 -442.17 -1.91 -20.51 16 7 C 0.52 13.00 6.57 87.66 0.58 13.58 16 8 O -0.57 -18.45 15.87 -3.05 -0.05 -18.49 16 9 C 0.17 2.73 1.07 2.86 0.00 2.73 16 10 C -0.17 -1.93 8.08 71.98 0.58 -1.35 16 11 C -0.17 -2.60 7.06 71.98 0.51 -2.09 16 12 N -1.11 -14.95 4.82 -155.17 -0.75 -15.70 16 13 S 2.62 33.54 5.63 -56.49 -0.32 33.22 16 14 C -0.66 -1.68 9.04 113.37 1.02 -0.65 16 15 O -1.00 -21.28 18.08 -127.65 -2.31 -23.59 16 16 O -0.98 -18.46 14.50 -127.65 -1.85 -20.31 16 17 C -0.11 -3.79 5.46 30.62 0.17 -3.63 16 18 C -0.13 -5.02 6.08 30.67 0.19 -4.84 16 19 C 0.18 8.57 5.25 86.36 0.45 9.02 16 20 N -0.60 -29.45 2.98 -675.24 -2.01 -31.47 16 21 C -0.25 -13.55 8.52 84.03 0.72 -12.84 16 22 H 0.07 3.71 6.29 -2.91 -0.02 3.69 16 23 C -0.05 -2.62 5.03 84.86 0.43 -2.19 16 24 N -0.93 -54.82 11.14 21.65 0.24 -54.58 16 25 Si 0.96 44.78 29.57 68.60 2.03 46.81 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 29 H 0.04 1.68 7.39 -2.39 -0.02 1.66 16 30 H 0.05 1.86 7.69 -2.39 -0.02 1.84 16 31 H 0.08 2.06 7.79 -2.38 -0.02 2.04 16 32 H 0.41 9.23 7.78 -92.70 -0.72 8.51 16 33 H 0.11 0.38 4.21 -2.39 -0.01 0.37 16 34 H 0.08 1.04 8.06 -2.39 -0.02 1.02 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.33 7.66 -2.39 -0.02 1.31 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.10 1.00 5.17 -2.39 -0.01 0.99 16 39 H 0.42 5.64 8.22 -96.74 -0.80 4.84 16 40 H 0.15 -0.10 7.86 -2.39 -0.02 -0.12 16 41 H 0.15 -0.08 8.14 -2.39 -0.02 -0.09 16 42 H 0.16 -0.16 5.84 -2.39 -0.01 -0.18 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 48 H 0.05 2.97 6.19 -2.38 -0.01 2.95 16 49 H 0.25 14.18 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -77.90 382.58 -2.03 -79.93 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -0.54 Total: 19.32 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.44 Total: 5.37 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -4.43 Total: -122.25 kcal Atomic # 8 Polarization: -58.18 SS G_CDS: -4.21 Total: -62.39 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 33.54 SS G_CDS: -0.32 Total: 33.22 kcal Total: -77.90 -2.03 -79.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507381532.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.368 kcal (2) G-P(sol) polarization free energy of solvation -77.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds