Wall clock time and date at job start Wed Apr 1 2020 05:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.58465 * 2 1 4 4 C 1.53190 * 109.58700 * 120.43216 * 2 1 3 5 5 H 1.08993 * 109.50237 * 54.43404 * 4 2 1 6 6 N 1.46500 * 109.49511 * 294.37190 * 4 2 1 7 7 C 1.34776 * 120.00155 * 155.00266 * 6 4 2 8 8 O 1.21286 * 119.99731 * 0.02562 * 7 6 4 9 9 C 1.50706 * 120.00465 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.46978 * 84.99629 * 9 7 6 11 11 C 1.52996 * 109.47242 * 204.99965 * 9 7 6 12 12 N 1.46498 * 109.46946 * 324.99890 * 9 7 6 13 13 S 1.65601 * 120.00073 * 291.25864 * 12 9 7 14 14 C 1.81403 * 104.44932 * 61.39870 * 13 12 9 15 15 O 1.42098 * 104.27885 * 177.46948 * 13 12 9 16 16 O 1.42102 * 104.27523 * 305.32809 * 13 12 9 17 17 C 1.53039 * 109.31397 * 174.42364 * 4 2 1 18 18 C 1.53040 * 109.53742 * 298.63387 * 17 4 2 19 19 C 1.53188 * 109.31379 * 61.36217 * 18 17 4 20 20 N 1.46925 * 108.77718 * 305.36604 * 19 18 17 21 21 C 1.36937 * 120.63382 * 233.58617 * 20 19 18 22 22 H 1.08003 * 120.00063 * 149.72156 * 21 20 19 23 23 C 1.38812 * 119.99691 * 329.71794 * 21 20 19 24 24 N 1.31618 * 120.00280 * 345.40268 * 23 21 20 25 25 Si 1.86806 * 119.99879 * 165.40871 * 23 21 20 26 26 H 1.48492 * 109.47459 * 89.99484 * 25 23 21 27 27 H 1.48497 * 109.46844 * 210.00070 * 25 23 21 28 28 H 1.48503 * 109.46855 * 329.99591 * 25 23 21 29 29 H 1.09003 * 109.47477 * 180.28246 * 1 2 3 30 30 H 1.08997 * 109.46905 * 300.28010 * 1 2 3 31 31 H 1.08996 * 109.47091 * 60.27933 * 1 2 3 32 32 H 0.96998 * 120.00229 * 334.99627 * 6 4 2 33 33 H 1.09002 * 109.46901 * 59.99901 * 10 9 7 34 34 H 1.08994 * 109.47067 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.47052 * 300.00490 * 10 9 7 36 36 H 1.09003 * 109.47253 * 51.04081 * 11 9 7 37 37 H 1.08995 * 109.47104 * 171.04245 * 11 9 7 38 38 H 1.09002 * 109.47087 * 291.04598 * 11 9 7 39 39 H 0.97002 * 119.99994 * 111.25385 * 12 9 7 40 40 H 1.09004 * 109.47031 * 55.65839 * 14 13 12 41 41 H 1.08993 * 109.46919 * 175.64981 * 14 13 12 42 42 H 1.08995 * 109.47221 * 295.65632 * 14 13 12 43 43 H 1.08997 * 109.46344 * 178.61435 * 17 4 2 44 44 H 1.08998 * 109.45955 * 58.65017 * 17 4 2 45 45 H 1.09009 * 109.49421 * 301.41681 * 18 17 4 46 46 H 1.08998 * 109.50193 * 181.31716 * 18 17 4 47 47 H 1.08996 * 109.58863 * 65.15556 * 19 18 17 48 48 H 1.08997 * 109.58868 * 185.43793 * 19 18 17 49 49 H 0.96995 * 120.00256 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7310 1.2444 5 1 1.6025 -1.7267 1.2894 6 7 1.6705 0.0235 2.4435 7 6 1.5472 -0.6096 3.6269 8 8 1.7455 -1.8039 3.6992 9 6 1.1641 0.1667 4.8605 10 6 -0.3593 0.2889 4.9335 11 6 1.6773 -0.5641 6.1028 12 7 1.7589 1.5041 4.8002 13 16 3.3994 1.6875 4.9326 14 6 4.0726 0.7744 3.5170 15 8 3.6102 3.0835 4.7714 16 8 3.7280 1.0327 6.1502 17 6 3.5675 -0.8495 1.1690 18 6 3.9569 -1.6656 -0.0657 19 6 3.4650 -0.9452 -1.3250 20 7 2.0225 -0.6980 -1.1954 21 6 1.1537 -1.1099 -2.1704 22 1 0.1418 -1.3843 -1.9112 23 6 1.5735 -1.1746 -3.4919 24 7 2.6894 -0.5802 -3.8578 25 14 0.5548 -2.1054 -4.7511 26 1 -0.4312 -1.1832 -5.3694 27 1 1.4481 -2.6530 -5.8033 28 1 -0.1623 -3.2200 -4.0813 29 1 -0.3634 -1.0277 0.0051 30 1 -0.3633 0.5182 0.8874 31 1 -0.3633 0.5095 -0.8924 32 1 1.5124 0.9788 2.3857 33 1 -0.8019 -0.7063 4.9783 34 1 -0.6364 0.8507 5.8254 35 1 -0.7249 0.8095 4.0484 36 1 2.7359 -0.7922 5.9789 37 1 1.5423 0.0700 6.9790 38 1 1.1191 -1.4910 6.2356 39 1 1.1918 2.2823 4.6827 40 1 3.6293 1.1535 2.5961 41 1 5.1539 0.9063 3.4807 42 1 3.8390 -0.2848 3.6235 43 1 3.9378 -1.3475 2.0650 44 1 4.0061 0.1459 1.0995 45 1 3.4982 -2.6528 -0.0087 46 1 5.0412 -1.7695 -0.1061 47 1 3.9902 0.0038 -1.4317 48 1 3.6540 -1.5678 -2.1994 49 1 2.9825 -0.6251 -4.7813 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507381536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:08 Heat of formation + Delta-G solvation = -75.930002 kcal Electronic energy + Delta-G solvation = -31807.779089 eV Core-core repulsion = 27705.250594 eV Total energy + Delta-G solvation = -4102.528495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.64696 -38.18234 -37.32013 -36.45267 -36.09460 -34.59830 -32.68264 -31.82609 -30.89424 -29.63757 -29.34091 -27.60380 -26.42378 -25.11899 -23.82805 -21.75845 -20.85125 -20.45715 -19.67137 -19.27759 -17.93838 -17.86235 -16.79941 -16.30064 -15.88533 -15.79657 -15.23261 -15.06154 -14.72921 -14.38850 -13.89834 -13.87723 -13.74133 -13.55730 -13.39420 -13.18716 -12.88916 -12.75951 -12.61808 -12.53688 -12.37547 -12.19733 -12.03639 -11.94131 -11.81219 -11.64221 -11.28474 -11.21626 -11.07022 -10.98525 -10.81511 -10.73848 -10.65006 -10.37574 -10.22152 -10.11109 -9.84003 -9.58717 -9.35682 -8.82916 -8.54012 -6.74781 -5.87454 -3.33292 0.03606 2.18567 2.60334 3.05629 3.31720 3.39684 3.41565 3.52637 4.00643 4.30950 4.41184 4.47663 4.63861 4.67257 4.76869 4.96354 5.19187 5.26620 5.33831 5.39101 5.40501 5.45794 5.59595 5.62553 5.66401 5.73978 5.80903 5.84646 5.94265 6.09513 6.16025 6.20286 6.28296 6.38290 6.47347 6.57016 6.57602 6.62905 6.71184 6.87718 6.94125 7.29739 7.47019 7.58136 7.73963 8.12077 8.36906 9.11927 9.74124 10.30332 11.21192 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019335 B = 0.003362 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.791463 B = 8326.060567 C = 8834.192560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.166 3.834 3 H 0.027 0.973 4 C 0.125 3.875 5 H 0.090 0.910 6 N -0.717 5.717 7 C 0.490 3.510 8 O -0.523 6.523 9 C 0.160 3.840 10 C -0.145 4.145 11 C -0.156 4.156 12 N -1.112 6.112 13 S 2.604 3.396 14 C -0.679 4.679 15 O -0.959 6.959 16 O -0.952 6.952 17 C -0.123 4.123 18 C -0.142 4.142 19 C 0.170 3.830 20 N -0.580 5.580 21 C -0.255 4.255 22 H 0.070 0.930 23 C 0.007 3.993 24 N -0.901 5.901 25 Si 0.902 3.098 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.279 1.279 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.396 0.604 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.421 0.579 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.135 0.865 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.019 0.981 48 H 0.088 0.912 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 4.104 17.129 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.045 0.955 4 C 0.020 3.980 5 H 0.108 0.892 6 N -0.368 5.368 7 C 0.273 3.727 8 O -0.398 6.398 9 C 0.067 3.933 10 C -0.203 4.203 11 C -0.215 4.215 12 N -0.873 5.873 13 S 2.698 3.302 14 C -0.830 4.830 15 O -0.950 6.950 16 O -0.942 6.942 17 C -0.161 4.161 18 C -0.182 4.182 19 C 0.044 3.956 20 N -0.303 5.303 21 C -0.385 4.385 22 H 0.087 0.913 23 C -0.192 4.192 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.214 1.214 27 H -0.216 1.216 28 H -0.204 1.204 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.231 0.769 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.257 0.743 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.037 0.963 48 H 0.106 0.894 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.069 3.543 17.662 18.045 hybrid contribution -0.810 -0.027 -1.552 1.751 sum -1.878 3.516 16.110 16.596 Atomic orbital electron populations 1.21821 0.95577 1.01716 1.00319 1.20571 0.93363 0.93510 0.86703 0.95520 1.21924 0.95200 0.97213 0.83679 0.89168 1.46398 1.69450 1.12397 1.08597 1.21020 0.77913 0.88581 0.85164 1.90756 1.49028 1.14381 1.85618 1.20536 0.97222 0.81373 0.94127 1.21989 0.90547 1.04143 1.03648 1.22326 1.03332 1.00789 0.95035 1.55823 1.26754 1.13346 1.91329 1.05034 0.73460 0.74816 0.76927 1.31060 1.13978 1.16389 1.21557 1.93622 1.84092 1.29668 1.87593 1.93634 1.82807 1.76895 1.40853 1.22029 0.95342 1.00223 0.98549 1.22208 0.99324 0.99782 0.96853 1.20824 0.83121 0.97185 0.94459 1.44004 1.03107 1.65111 1.18118 1.19124 0.95368 1.38090 0.85885 0.91280 1.25099 0.97762 0.99295 0.97047 1.70007 1.23704 1.43945 1.16832 0.86317 0.79459 0.79855 0.81246 1.21359 1.21551 1.20418 0.92634 0.94337 0.91650 0.76901 0.90144 0.90351 0.91103 0.90214 0.90336 0.90405 0.74321 0.84078 0.84923 0.84708 0.92817 0.92266 0.92442 0.92924 0.96261 0.89428 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 7.84 37.16 0.29 -2.01 16 2 C 0.17 3.03 3.03 -67.60 -0.21 2.83 16 3 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 4 C 0.13 1.97 2.00 -67.81 -0.14 1.83 16 5 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 6 N -0.72 -8.47 2.43 -53.69 -0.13 -8.60 16 7 C 0.49 5.94 4.02 -10.98 -0.04 5.90 16 8 O -0.52 -8.29 15.89 5.55 0.09 -8.20 16 9 C 0.16 1.45 1.08 -132.97 -0.14 1.31 16 10 C -0.14 -1.01 8.57 37.16 0.32 -0.69 16 11 C -0.16 -1.57 6.64 37.16 0.25 -1.33 16 12 N -1.11 -8.55 4.71 -0.40 0.00 -8.56 16 13 S 2.60 25.51 5.97 -107.50 -0.64 24.87 16 14 C -0.68 -6.41 7.34 101.05 0.74 -5.67 16 15 O -0.96 -12.04 18.08 -57.54 -1.04 -13.08 16 16 O -0.95 -11.82 14.70 -57.54 -0.85 -12.66 16 17 C -0.12 -1.92 3.74 -26.69 -0.10 -2.02 16 18 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 19 C 0.17 3.77 5.27 -3.71 -0.02 3.75 16 20 N -0.58 -13.23 2.98 -164.78 -0.49 -13.72 16 21 C -0.26 -6.48 8.56 -15.06 -0.13 -6.61 16 22 H 0.07 1.72 6.25 -52.48 -0.33 1.39 16 23 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 24 N -0.90 -24.90 11.21 55.49 0.62 -24.28 16 25 Si 0.90 20.86 29.58 -169.99 -5.03 15.83 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.05 0.99 7.44 -51.93 -0.39 0.61 16 30 H 0.04 0.51 7.80 -51.93 -0.41 0.10 16 31 H 0.06 1.20 7.63 -51.93 -0.40 0.81 16 32 H 0.40 3.74 7.59 -40.82 -0.31 3.43 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.92 6.35 -51.93 -0.33 0.59 16 37 H 0.08 0.72 8.02 -51.93 -0.42 0.31 16 38 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 39 H 0.42 2.23 8.58 -34.47 -0.30 1.93 16 40 H 0.14 1.32 4.93 -51.92 -0.26 1.06 16 41 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.13 1.45 4.58 -51.93 -0.24 1.21 16 43 H 0.05 0.80 6.59 -51.93 -0.34 0.46 16 44 H 0.06 0.86 6.41 -51.93 -0.33 0.52 16 45 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.09 2.22 6.16 -51.93 -0.32 1.90 16 49 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 373.45 15.07 5.63 5.63 Total: -1.00 -33.31 373.45 -8.96 -42.26 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.69 Total: 5.84 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 0.57 Total: -5.33 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.00 Total: -55.16 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.80 Total: -33.95 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Atomic # 16 Polarization: 25.51 SS G_CDS: -0.64 Total: 24.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.31 -8.96 -42.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507381536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.669 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds