Wall clock time and date at job start Wed Apr 1 2020 05:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47190 * 2 1 4 4 N 1.46507 * 109.47090 * 119.99315 * 2 1 3 5 5 C 1.34773 * 120.00146 * 275.00262 * 4 2 1 6 6 O 1.21280 * 119.99720 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99819 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.46778 * 179.97438 * 7 5 4 9 9 N 1.46496 * 109.46597 * 179.97438 * 8 7 5 10 10 S 1.65609 * 119.99625 * 164.99861 * 9 8 7 11 11 C 1.81400 * 104.44847 * 65.00261 * 10 9 8 12 12 O 1.42102 * 104.27679 * 181.07055 * 10 9 8 13 13 O 1.42092 * 104.27772 * 308.92885 * 10 9 8 14 14 C 1.53000 * 109.47167 * 239.99328 * 2 1 3 15 15 C 1.53041 * 109.46101 * 180.02562 * 14 2 1 16 16 C 1.53187 * 109.31277 * 178.59935 * 15 14 2 17 17 N 1.46929 * 108.76472 * 54.66195 * 16 15 14 18 18 C 1.36934 * 120.63446 * 126.39934 * 17 16 15 19 19 H 1.07997 * 120.00395 * 331.83288 * 18 17 16 20 20 C 1.38814 * 120.00055 * 151.82587 * 18 17 16 21 21 N 1.31628 * 119.99879 * 343.07709 * 20 18 17 22 22 Si 1.86799 * 120.00098 * 163.07151 * 20 18 17 23 23 H 1.48493 * 109.47060 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47257 * 120.00228 * 22 20 18 25 25 H 1.48505 * 109.47061 * 240.00373 * 22 20 18 26 26 C 1.46932 * 118.73446 * 306.38257 * 17 16 15 27 27 C 1.53046 * 109.45742 * 59.97425 * 14 2 1 28 28 H 1.08993 * 109.47149 * 60.00913 * 1 2 3 29 29 H 1.08995 * 109.47049 * 300.00193 * 1 2 3 30 30 H 1.09004 * 109.46856 * 180.02562 * 1 2 3 31 31 H 0.97006 * 119.99570 * 95.00209 * 4 2 1 32 32 H 1.08998 * 109.47132 * 299.99571 * 7 5 4 33 33 H 1.08994 * 109.47116 * 59.99709 * 7 5 4 34 34 H 1.08998 * 109.47114 * 299.99797 * 8 7 5 35 35 H 1.09003 * 109.46756 * 60.00004 * 8 7 5 36 36 H 0.96999 * 120.01051 * 345.00246 * 9 8 7 37 37 H 1.09008 * 109.47305 * 59.99825 * 11 10 9 38 38 H 1.08997 * 109.47281 * 180.02562 * 11 10 9 39 39 H 1.09004 * 109.47181 * 300.00018 * 11 10 9 40 40 H 1.08999 * 109.45960 * 300.00312 * 14 2 1 41 41 H 1.09005 * 109.49800 * 298.56947 * 15 14 2 42 42 H 1.09007 * 109.49288 * 58.66563 * 15 14 2 43 43 H 1.09000 * 109.60239 * 294.87186 * 16 15 14 44 44 H 1.09000 * 109.70312 * 174.50654 * 16 15 14 45 45 H 0.97001 * 119.99789 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.58680 * 293.81921 * 26 17 16 47 47 H 1.08998 * 109.70202 * 173.46389 * 26 17 16 48 48 H 1.08997 * 109.49468 * 301.33188 * 27 14 2 49 49 H 1.08995 * 109.49941 * 61.39985 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8590 1.1588 2.4114 7 6 2.6499 -0.7283 3.5876 8 6 2.7018 0.2551 4.7586 9 7 3.1901 -0.4354 5.9547 10 16 3.7014 0.4390 7.2649 11 6 2.2096 1.2870 7.8532 12 8 4.1180 -0.5447 8.2019 13 8 4.6253 1.3731 6.7238 14 6 2.0400 -0.7214 -1.2491 15 6 3.5704 -0.7218 -1.2486 16 6 4.0773 -1.4751 -2.4824 17 7 3.4749 -0.8773 -3.6817 18 6 4.2608 -0.4519 -4.7192 19 1 5.2719 -0.1225 -4.5310 20 6 3.7579 -0.4441 -6.0131 21 7 2.6779 -1.1383 -6.3035 22 14 4.6136 0.5516 -7.3418 23 1 5.7967 1.2367 -6.7623 24 1 5.0524 -0.3541 -8.4339 25 1 3.6724 1.5632 -7.8858 26 6 2.0130 -0.7450 -3.7468 27 6 1.5292 -0.0002 -2.4986 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.2491 -1.6317 1.1528 32 1 1.9777 -1.5505 3.8327 33 1 3.6492 -1.1201 3.3980 34 1 3.3742 1.0771 4.5132 35 1 1.7026 0.6473 4.9482 36 1 3.2140 -1.4048 5.9795 37 1 1.4555 0.5486 8.1259 38 1 2.4562 1.8938 8.7244 39 1 1.8206 1.9285 7.0624 40 1 1.6765 -1.7490 -1.2489 41 1 3.9346 0.3053 -1.2741 42 1 3.9337 -1.2149 -0.3468 43 1 3.7904 -2.5244 -2.4136 44 1 5.1629 -1.3963 -2.5408 45 1 2.3267 -1.1331 -7.2077 46 1 1.5576 -1.7348 -3.7811 47 1 1.7341 -0.1834 -4.6384 48 1 0.4395 0.0203 -2.4868 49 1 1.9122 1.0201 -2.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508059105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:37 Heat of formation + Delta-G solvation = -130.904300 kcal Electronic energy + Delta-G solvation = -28757.800793 eV Core-core repulsion = 24652.888433 eV Total energy + Delta-G solvation = -4104.912360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03603 -39.44197 -38.16317 -37.06459 -36.94092 -36.36663 -34.47582 -32.98566 -31.53249 -31.23410 -30.25732 -30.05092 -27.15233 -25.30581 -24.09493 -23.60498 -21.91148 -21.40659 -20.72527 -20.35291 -18.83529 -18.60566 -17.89046 -17.33855 -17.20917 -16.90593 -16.71902 -16.56761 -15.80924 -15.56433 -15.30569 -15.18572 -14.84841 -14.77897 -14.62347 -14.28430 -13.99302 -13.97637 -13.94325 -13.48835 -13.37412 -13.29250 -13.19322 -13.07150 -12.92798 -12.72892 -12.64710 -12.62252 -12.50258 -12.34361 -12.13246 -11.98866 -11.93849 -11.78080 -11.45384 -11.22798 -11.05468 -10.76996 -10.53222 -10.39559 -9.96481 -8.65354 -7.87301 -5.31748 -0.64980 1.44350 1.46863 1.56843 1.72635 1.74112 2.35535 2.50870 2.91194 3.26796 3.30698 3.67000 3.72014 3.77275 3.99427 4.02485 4.07529 4.13029 4.19074 4.22975 4.46146 4.51398 4.55804 4.58750 4.63106 4.65080 4.77489 4.86072 4.92982 4.93749 4.98298 5.03564 5.07171 5.13751 5.17086 5.22834 5.32610 5.39637 5.48492 5.56076 5.62692 5.67285 5.82574 6.16918 6.40648 6.66830 7.16671 7.35950 7.89308 8.39223 9.18569 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023705 B = 0.001802 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.911247 B =15533.799020 C =16070.376430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.061 0.939 4 N -0.711 5.711 5 C 0.512 3.488 6 O -0.586 6.586 7 C -0.141 4.141 8 C 0.125 3.875 9 N -1.112 6.112 10 S 2.625 3.375 11 C -0.655 4.655 12 O -0.997 6.997 13 O -1.006 7.006 14 C -0.073 4.073 15 C -0.112 4.112 16 C 0.140 3.860 17 N -0.613 5.613 18 C -0.260 4.260 19 H 0.061 0.939 20 C -0.051 4.051 21 N -0.933 5.933 22 Si 0.963 3.037 23 H -0.270 1.270 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.177 3.823 27 C -0.122 4.122 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.415 0.585 32 H 0.137 0.863 33 H 0.118 0.882 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.428 0.572 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.080 0.920 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.020 0.980 44 H 0.046 0.954 45 H 0.250 0.750 46 H 0.001 0.999 47 H 0.049 0.951 48 H 0.076 0.924 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.638 -1.154 28.416 29.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.079 0.921 4 N -0.363 5.363 5 C 0.299 3.701 6 O -0.466 6.466 7 C -0.182 4.182 8 C -0.001 4.001 9 N -0.874 5.874 10 S 2.721 3.279 11 C -0.809 4.809 12 O -0.988 6.988 13 O -0.996 6.996 14 C -0.092 4.092 15 C -0.151 4.151 16 C 0.015 3.985 17 N -0.337 5.337 18 C -0.391 4.391 19 H 0.079 0.921 20 C -0.247 4.247 21 N -0.579 5.579 22 Si 0.791 3.209 23 H -0.194 1.194 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.051 3.949 27 C -0.162 4.162 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.252 0.748 32 H 0.155 0.845 33 H 0.136 0.864 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.264 0.736 37 H 0.172 0.828 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.102 0.898 43 H 0.038 0.962 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.019 0.981 47 H 0.067 0.933 48 H 0.094 0.906 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.989 -0.124 28.631 29.251 hybrid contribution -0.056 -0.131 -1.487 1.494 sum -6.044 -0.256 27.144 27.810 Atomic orbital electron populations 1.22132 0.94445 1.02809 1.02018 1.20807 0.94408 0.96152 0.83642 0.92111 1.46008 1.66555 1.14761 1.08930 1.21037 0.76738 0.86881 0.85399 1.90713 1.52160 1.17951 1.85801 1.21822 1.05813 1.00000 0.90588 1.21024 1.00552 0.94742 0.83823 1.55268 1.83742 1.19692 1.28671 1.04111 0.76972 0.73890 0.72957 1.30348 1.20779 1.15681 1.14054 1.93574 1.82025 1.59651 1.63526 1.93576 1.61578 1.66232 1.78257 1.21186 0.95417 0.99736 0.92821 1.21887 0.95327 1.00001 0.97932 1.21069 0.96290 0.94420 0.86741 1.44346 1.02530 1.70557 1.16225 1.19501 0.97433 1.35496 0.86645 0.92109 1.25753 0.99426 1.00424 0.99056 1.70177 1.26035 1.42432 1.19273 0.85273 0.78105 0.78267 0.79210 1.19428 1.21822 1.21650 1.20585 0.82836 0.95883 0.95570 1.22066 1.00122 0.98745 0.95221 0.91509 0.92955 0.91087 0.74799 0.84528 0.86362 0.91588 0.89614 0.73588 0.82831 0.83863 0.84056 0.90150 0.94131 0.89754 0.96173 0.93511 0.94135 0.98119 0.93286 0.90606 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 9.13 71.98 0.66 -2.62 16 2 C 0.15 3.62 2.16 44.99 0.10 3.72 16 3 H 0.06 1.78 7.58 -2.39 -0.02 1.77 16 4 N -0.71 -12.09 4.36 -442.52 -1.93 -14.02 16 5 C 0.51 9.32 7.79 87.66 0.68 10.00 16 6 O -0.59 -15.94 15.64 -3.03 -0.05 -15.99 16 7 C -0.14 -1.26 5.84 29.85 0.17 -1.09 16 8 C 0.13 1.39 5.42 86.38 0.47 1.86 16 9 N -1.11 -9.06 5.89 -187.49 -1.10 -10.16 16 10 S 2.62 31.38 6.10 -56.49 -0.34 31.04 16 11 C -0.65 -2.41 10.89 113.37 1.23 -1.17 16 12 O -1.00 -18.63 18.08 -127.65 -2.31 -20.94 16 13 O -1.01 -22.23 17.50 -127.65 -2.23 -24.46 16 14 C -0.07 -2.00 1.79 -10.76 -0.02 -2.02 16 15 C -0.11 -3.41 5.22 30.67 0.16 -3.25 16 16 C 0.14 5.52 6.52 86.36 0.56 6.08 16 17 N -0.61 -30.33 2.99 -699.09 -2.09 -32.42 16 18 C -0.26 -14.41 9.58 84.03 0.81 -13.60 16 19 H 0.06 3.33 7.88 -2.91 -0.02 3.31 16 20 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 21 N -0.93 -54.97 11.19 21.65 0.24 -54.72 16 22 Si 0.96 45.26 29.59 68.60 2.03 47.29 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 26 C 0.18 8.26 5.30 86.36 0.46 8.72 16 27 C -0.12 -4.27 5.04 30.67 0.15 -4.12 16 28 H 0.07 1.47 6.40 -2.39 -0.02 1.45 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.42 4.65 8.39 -92.70 -0.78 3.87 16 32 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.09 7.65 -2.39 -0.02 1.07 16 35 H 0.09 0.74 8.10 -2.39 -0.02 0.72 16 36 H 0.43 1.71 8.62 -96.75 -0.83 0.88 16 37 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.08 1.96 7.41 -2.38 -0.02 1.94 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 45 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 47 H 0.05 2.65 6.07 -2.39 -0.01 2.63 16 48 H 0.08 2.31 6.36 -2.39 -0.02 2.29 16 49 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -84.13 400.66 -2.59 -86.72 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -0.65 Total: 7.60 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 5.85 Total: 0.06 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -4.88 Total: -111.32 kcal Atomic # 8 Polarization: -56.80 SS G_CDS: -4.59 Total: -61.39 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 31.38 SS G_CDS: -0.34 Total: 31.04 kcal Total: -84.13 -2.59 -86.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508059105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.181 kcal (2) G-P(sol) polarization free energy of solvation -84.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds