Wall clock time and date at job start Wed Apr 1 2020 04:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00336 * 90.00128 * 4 3 2 6 6 O 1.21274 * 120.00360 * 179.97438 * 5 4 3 7 7 C 1.50708 * 119.99656 * 359.97438 * 5 4 3 8 8 C 1.52998 * 109.46712 * 180.02562 * 7 5 4 9 9 S 1.81405 * 109.46866 * 179.97438 * 8 7 5 10 10 O 1.42098 * 110.53978 * 291.62124 * 9 8 7 11 11 O 1.42099 * 110.54368 * 68.37597 * 9 8 7 12 12 N 1.65607 * 104.44610 * 179.97438 * 9 8 7 13 13 C 1.46499 * 120.00049 * 65.00157 * 12 9 8 14 14 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 15 15 H 1.09003 * 110.64412 * 1.69198 * 14 4 3 16 16 C 1.55156 * 110.71821 * 125.02667 * 14 4 3 17 17 C 1.54911 * 101.58019 * 153.86133 * 16 14 4 18 18 N 1.47418 * 104.83398 * 322.99600 * 17 16 14 19 19 C 1.36936 * 125.64532 * 204.16129 * 18 17 16 20 20 H 1.08007 * 120.00179 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00186 * 359.95875 * 19 18 17 22 22 N 1.31616 * 120.00179 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00179 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47104 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47320 * 119.99768 * 23 21 19 26 26 H 1.48507 * 109.47218 * 239.99899 * 23 21 19 27 27 C 1.47023 * 108.70608 * 24.12467 * 18 17 16 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 31 31 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 32 32 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09004 * 109.46961 * 300.00007 * 7 5 4 36 36 H 1.08990 * 109.47216 * 60.00318 * 7 5 4 37 37 H 1.08994 * 109.47197 * 299.99710 * 8 7 5 38 38 H 1.08997 * 109.47675 * 59.99962 * 8 7 5 39 39 H 0.97003 * 119.99504 * 244.99344 * 12 9 8 40 40 H 1.08996 * 109.46852 * 59.99995 * 13 12 9 41 41 H 1.09009 * 109.46623 * 179.97438 * 13 12 9 42 42 H 1.08995 * 109.46912 * 299.99710 * 13 12 9 43 43 H 1.08993 * 111.00373 * 271.94051 * 16 14 4 44 44 H 1.08999 * 111.00332 * 35.79171 * 16 14 4 45 45 H 1.08997 * 110.36937 * 204.14970 * 17 16 14 46 46 H 1.09010 * 110.36436 * 81.83194 * 17 16 14 47 47 H 0.96999 * 120.00433 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.87904 * 239.52221 * 27 18 17 49 49 H 1.09000 * 110.00970 * 118.43312 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1785 1.4427 -1.1680 6 8 5.3912 1.4431 -1.1686 7 6 3.4244 1.4423 -2.4729 8 6 4.4182 1.4420 -3.6361 9 16 3.5106 1.4408 -5.2068 10 8 2.8370 0.2035 -5.3924 11 8 2.8361 2.6775 -5.3939 12 7 4.6924 1.4412 -6.3669 13 6 5.5915 0.2919 -6.4970 14 6 4.2380 1.4424 1.2678 15 1 3.5475 1.4123 2.1107 16 6 5.2338 0.2540 1.3263 17 6 6.3054 0.7941 2.3059 18 7 6.4178 2.2293 1.9884 19 6 7.5102 3.0177 2.2338 20 1 7.4939 4.0629 1.9621 21 6 8.6385 2.4737 2.8320 22 7 8.6582 1.2003 3.1639 23 14 10.1284 3.5494 3.1674 24 1 9.8541 4.9334 2.7041 25 1 10.4119 3.5619 4.6250 26 1 11.3040 3.0079 2.4392 27 6 5.1632 2.6737 1.3638 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 2.7980 0.5521 -2.5303 36 1 2.7975 2.3320 -2.5304 37 1 5.0449 2.3319 -3.5789 38 1 5.0449 0.5520 -3.5785 39 1 4.7891 2.2025 -6.9603 40 1 5.0083 -0.6026 -6.7155 41 1 6.2969 0.4726 -7.3083 42 1 6.1379 0.1508 -5.5646 43 1 4.7534 -0.6389 1.7262 44 1 5.6653 0.0572 0.3449 45 1 7.2588 0.2928 2.1392 46 1 5.9796 0.6581 3.3372 47 1 9.4465 0.8202 3.5823 48 1 5.3640 3.0653 0.3666 49 1 4.6938 3.4434 1.9765 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567682982.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:40 Heat of formation + Delta-G solvation = -75.090492 kcal Electronic energy + Delta-G solvation = -30090.664800 eV Core-core repulsion = 25988.172708 eV Total energy + Delta-G solvation = -4102.492091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.22373 -37.37526 -36.96324 -36.24217 -35.98519 -35.30738 -33.44677 -32.90755 -31.70713 -29.13105 -27.51522 -26.31517 -26.31149 -25.23288 -23.99043 -21.95060 -20.88904 -20.09479 -19.62396 -18.84056 -17.95746 -17.30167 -16.85726 -16.70636 -16.34144 -15.90893 -15.66442 -14.98622 -14.77544 -14.58974 -14.33677 -14.04342 -14.01097 -13.71447 -13.37514 -13.16621 -12.99954 -12.78138 -12.46529 -12.37891 -12.32156 -12.27302 -12.07931 -11.95344 -11.84004 -11.61617 -11.53853 -11.37734 -11.10477 -10.95869 -10.88121 -10.81219 -10.72475 -10.48423 -10.03635 -9.91937 -9.77759 -9.51080 -9.15370 -8.57941 -8.34162 -6.72502 -5.56993 -2.97301 -0.03811 2.40489 2.78267 3.04865 3.44100 3.47914 3.49523 3.52030 3.95574 4.16770 4.46230 4.54158 4.57176 4.66176 4.68515 4.81966 5.03414 5.09861 5.10246 5.21200 5.26836 5.36902 5.40944 5.42964 5.45198 5.49902 5.57921 5.62374 5.65098 5.80488 5.84566 5.85184 5.93810 6.10669 6.30012 6.55962 6.56923 6.59942 6.65832 6.78172 7.19152 7.52963 7.64433 7.71376 7.94014 8.39253 8.45861 9.30400 9.91625 10.56698 11.47090 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010491 B = 0.003213 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.435310 B = 8711.241701 C =10624.637558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C 0.104 3.896 4 N -0.605 5.605 5 C 0.514 3.486 6 O -0.501 6.501 7 C -0.135 4.135 8 C -0.610 4.610 9 S 2.614 3.386 10 O -0.956 6.956 11 O -0.958 6.958 12 N -1.123 6.123 13 C 0.080 3.920 14 C 0.135 3.865 15 H 0.089 0.911 16 C -0.156 4.156 17 C 0.158 3.842 18 N -0.596 5.596 19 C -0.214 4.214 20 H 0.075 0.925 21 C -0.013 4.013 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.133 3.867 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.418 0.582 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.009 0.991 47 H 0.250 0.750 48 H 0.035 0.965 49 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.006 -3.178 -15.831 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.185 4.185 3 C -0.019 4.019 4 N -0.338 5.338 5 C 0.299 3.701 6 O -0.375 6.375 7 C -0.176 4.176 8 C -0.740 4.740 9 S 2.706 3.294 10 O -0.945 6.945 11 O -0.949 6.949 12 N -0.882 5.882 13 C -0.067 4.067 14 C 0.032 3.968 15 H 0.107 0.893 16 C -0.195 4.195 17 C 0.033 3.967 18 N -0.322 5.322 19 C -0.342 4.342 20 H 0.093 0.907 21 C -0.208 4.208 22 N -0.573 5.573 23 Si 0.744 3.256 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.006 3.994 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.252 0.748 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.124 0.876 46 H 0.027 0.973 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -15.050 -3.347 -15.801 22.077 hybrid contribution 1.359 0.858 0.403 1.657 sum -13.691 -2.489 -15.398 20.754 Atomic orbital electron populations 1.21718 0.95108 1.02056 1.01979 1.22020 0.96086 0.97250 1.03149 1.21735 0.79841 0.96976 1.03396 1.47984 1.06077 1.73580 1.06121 1.20040 0.88144 0.77412 0.84502 1.90819 1.13109 1.46901 1.86699 1.21449 0.98022 1.05355 0.92811 1.30389 1.12895 1.13567 1.17152 1.04917 0.74176 0.74295 0.76051 1.93602 1.70964 1.45570 1.84407 1.93611 1.71367 1.45109 1.84780 1.55343 1.53351 1.28478 1.51052 1.21548 0.93890 0.88010 1.03270 1.22223 0.93262 0.98184 0.83146 0.89338 1.23436 0.97727 0.95369 1.02972 1.21839 0.97845 0.84666 0.92364 1.44297 1.11028 1.06595 1.70271 1.19102 0.90837 0.91977 1.32305 0.90665 1.24754 0.98250 0.96373 1.01451 1.69807 1.28630 1.11006 1.47825 0.86008 0.82887 0.79231 0.77447 1.20627 1.21850 1.21835 1.21475 0.87732 0.93392 0.96787 0.92532 0.92417 0.92466 0.91706 0.91096 0.90525 0.89950 0.87705 0.87669 0.83856 0.84157 0.74838 0.91300 0.89904 0.91835 0.92974 0.89959 0.87581 0.97308 0.93934 0.94705 0.96636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.69 16 2 C -0.15 -1.30 6.26 -26.73 -0.17 -1.46 16 3 C 0.10 1.02 5.19 -4.04 -0.02 1.00 16 4 N -0.60 -8.59 2.54 -164.02 -0.42 -9.01 16 5 C 0.51 7.81 6.78 -10.98 -0.07 7.74 16 6 O -0.50 -9.95 12.33 5.56 0.07 -9.89 16 7 C -0.13 -1.43 4.26 -27.88 -0.12 -1.55 16 8 C -0.61 -5.89 5.31 37.16 0.20 -5.69 16 9 S 2.61 24.32 5.46 -107.50 -0.59 23.73 16 10 O -0.96 -11.52 17.74 -57.54 -1.02 -12.54 16 11 O -0.96 -11.60 18.08 -57.54 -1.04 -12.64 16 12 N -1.12 -7.91 6.08 -16.63 -0.10 -8.01 16 13 C 0.08 0.46 11.03 59.85 0.66 1.12 16 14 C 0.13 2.39 3.44 -66.10 -0.23 2.17 16 15 H 0.09 1.41 7.88 -51.93 -0.41 1.00 16 16 C -0.16 -3.15 6.40 -24.58 -0.16 -3.30 16 17 C 0.16 4.01 5.89 -2.53 -0.01 4.00 16 18 N -0.60 -16.05 3.39 -170.07 -0.58 -16.62 16 19 C -0.21 -6.23 10.27 -15.06 -0.15 -6.39 16 20 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 21 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 22 N -0.92 -27.75 10.09 55.49 0.56 -27.19 16 23 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 C 0.13 2.96 6.49 -3.06 -0.02 2.94 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.58 7.22 -51.93 -0.37 0.21 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.60 6.44 -51.93 -0.33 0.26 16 34 H 0.08 0.74 7.96 -51.93 -0.41 0.32 16 35 H 0.10 0.89 7.19 -51.93 -0.37 0.52 16 36 H 0.11 0.90 7.40 -51.93 -0.38 0.51 16 37 H 0.14 1.39 8.10 -51.93 -0.42 0.97 16 38 H 0.14 1.29 7.73 -51.93 -0.40 0.89 16 39 H 0.42 2.28 8.92 -34.47 -0.31 1.97 16 40 H 0.07 0.42 8.04 -51.93 -0.42 0.00 16 41 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 42 H 0.06 0.33 7.73 -51.93 -0.40 -0.07 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.81 5.81 -51.93 -0.30 1.51 16 45 H 0.11 3.06 5.87 -51.93 -0.31 2.75 16 46 H 0.01 0.24 8.14 -51.92 -0.42 -0.19 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.04 0.82 6.28 -51.93 -0.33 0.50 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 397.15 15.07 5.98 5.98 Total: -1.00 -38.87 397.15 -10.08 -48.95 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.10 Total: 0.06 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 0.17 Total: -0.61 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.53 Total: -60.83 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.99 Total: -35.06 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Atomic # 16 Polarization: 24.32 SS G_CDS: -0.59 Total: 23.73 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.87 -10.08 -48.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567682982.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.142 kcal (2) G-P(sol) polarization free energy of solvation -38.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds