Wall clock time and date at job start Wed Apr 1 2020 04:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00336 * 90.00128 * 4 3 2 6 6 O 1.21274 * 120.00360 * 179.97438 * 5 4 3 7 7 C 1.50708 * 119.99656 * 359.97438 * 5 4 3 8 8 C 1.52998 * 109.46712 * 180.02562 * 7 5 4 9 9 S 1.81405 * 109.46866 * 179.97438 * 8 7 5 10 10 O 1.42098 * 110.53978 * 291.62124 * 9 8 7 11 11 O 1.42099 * 110.54368 * 68.37597 * 9 8 7 12 12 N 1.65607 * 104.44610 * 179.97438 * 9 8 7 13 13 C 1.46499 * 120.00049 * 65.00157 * 12 9 8 14 14 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 15 15 H 1.09003 * 110.64412 * 1.69198 * 14 4 3 16 16 C 1.55156 * 110.71821 * 125.02667 * 14 4 3 17 17 C 1.54911 * 101.58019 * 153.86133 * 16 14 4 18 18 N 1.47418 * 104.83398 * 322.99600 * 17 16 14 19 19 C 1.36936 * 125.64532 * 204.16129 * 18 17 16 20 20 H 1.08007 * 120.00179 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00186 * 359.95875 * 19 18 17 22 22 N 1.31616 * 120.00179 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00179 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47104 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47320 * 119.99768 * 23 21 19 26 26 H 1.48507 * 109.47218 * 239.99899 * 23 21 19 27 27 C 1.47023 * 108.70608 * 24.12467 * 18 17 16 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 31 31 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 32 32 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09004 * 109.46961 * 300.00007 * 7 5 4 36 36 H 1.08990 * 109.47216 * 60.00318 * 7 5 4 37 37 H 1.08994 * 109.47197 * 299.99710 * 8 7 5 38 38 H 1.08997 * 109.47675 * 59.99962 * 8 7 5 39 39 H 0.97003 * 119.99504 * 244.99344 * 12 9 8 40 40 H 1.08996 * 109.46852 * 59.99995 * 13 12 9 41 41 H 1.09009 * 109.46623 * 179.97438 * 13 12 9 42 42 H 1.08995 * 109.46912 * 299.99710 * 13 12 9 43 43 H 1.08993 * 111.00373 * 271.94051 * 16 14 4 44 44 H 1.08999 * 111.00332 * 35.79171 * 16 14 4 45 45 H 1.08997 * 110.36937 * 204.14970 * 17 16 14 46 46 H 1.09010 * 110.36436 * 81.83194 * 17 16 14 47 47 H 0.96999 * 120.00433 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.87904 * 239.52221 * 27 18 17 49 49 H 1.09000 * 110.00970 * 118.43312 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1785 1.4427 -1.1680 6 8 5.3912 1.4431 -1.1686 7 6 3.4244 1.4423 -2.4729 8 6 4.4182 1.4420 -3.6361 9 16 3.5106 1.4408 -5.2068 10 8 2.8370 0.2035 -5.3924 11 8 2.8361 2.6775 -5.3939 12 7 4.6924 1.4412 -6.3669 13 6 5.5915 0.2919 -6.4970 14 6 4.2380 1.4424 1.2678 15 1 3.5475 1.4123 2.1107 16 6 5.2338 0.2540 1.3263 17 6 6.3054 0.7941 2.3059 18 7 6.4178 2.2293 1.9884 19 6 7.5102 3.0177 2.2338 20 1 7.4939 4.0629 1.9621 21 6 8.6385 2.4737 2.8320 22 7 8.6582 1.2003 3.1639 23 14 10.1284 3.5494 3.1674 24 1 9.8541 4.9334 2.7041 25 1 10.4119 3.5619 4.6250 26 1 11.3040 3.0079 2.4392 27 6 5.1632 2.6737 1.3638 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 2.7980 0.5521 -2.5303 36 1 2.7975 2.3320 -2.5304 37 1 5.0449 2.3319 -3.5789 38 1 5.0449 0.5520 -3.5785 39 1 4.7891 2.2025 -6.9603 40 1 5.0083 -0.6026 -6.7155 41 1 6.2969 0.4726 -7.3083 42 1 6.1379 0.1508 -5.5646 43 1 4.7534 -0.6389 1.7262 44 1 5.6653 0.0572 0.3449 45 1 7.2588 0.2928 2.1392 46 1 5.9796 0.6581 3.3372 47 1 9.4465 0.8202 3.5823 48 1 5.3640 3.0653 0.3666 49 1 4.6938 3.4434 1.9765 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567682982.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:39 Heat of formation + Delta-G solvation = -105.025145 kcal Electronic energy + Delta-G solvation = -30091.962864 eV Core-core repulsion = 25988.172708 eV Total energy + Delta-G solvation = -4103.790155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.46392 -38.60987 -38.22559 -37.12190 -37.09120 -35.88046 -34.82918 -33.94995 -33.22281 -31.02327 -29.14999 -27.14590 -26.84236 -26.82061 -25.44978 -22.79154 -22.27173 -21.98148 -20.36669 -19.92374 -19.02117 -18.75400 -18.15525 -17.55969 -17.44885 -16.88468 -16.72923 -16.61415 -15.85777 -15.74387 -15.58844 -15.34778 -14.89913 -14.76559 -14.50648 -14.27209 -14.02381 -13.78265 -13.75348 -13.61170 -13.33552 -13.25851 -13.14719 -13.00109 -12.94852 -12.84039 -12.74742 -12.56921 -12.51575 -12.37059 -12.19215 -12.00021 -11.99197 -11.94945 -11.83346 -11.58332 -11.33860 -10.75822 -10.57515 -10.42587 -9.59623 -8.86832 -7.77494 -5.21232 -0.79727 1.43091 1.45260 1.55336 1.64122 1.71651 1.96492 2.49234 2.71369 3.20694 3.30288 3.32345 3.56241 3.74347 3.78962 3.90372 3.96178 4.08855 4.18145 4.20979 4.26656 4.33210 4.41633 4.50059 4.61862 4.64036 4.69419 4.75248 4.77190 4.82447 4.92085 4.97984 4.98816 5.01352 5.01741 5.08336 5.28647 5.31416 5.42369 5.52223 5.63099 5.76508 5.80063 6.09047 6.30187 6.47029 7.10300 7.25010 7.78113 8.42101 9.24484 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010491 B = 0.003213 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.435310 B = 8711.241701 C =10624.637558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.096 3.904 4 N -0.601 5.601 5 C 0.507 3.493 6 O -0.557 6.557 7 C -0.137 4.137 8 C -0.610 4.610 9 S 2.645 3.355 10 O -0.980 6.980 11 O -0.984 6.984 12 N -1.118 6.118 13 C 0.068 3.932 14 C 0.152 3.848 15 H 0.116 0.884 16 C -0.140 4.140 17 C 0.161 3.839 18 N -0.618 5.618 19 C -0.236 4.236 20 H 0.074 0.926 21 C -0.068 4.068 22 N -0.949 5.949 23 Si 0.981 3.019 24 H -0.269 1.269 25 H -0.287 1.287 26 H -0.291 1.291 27 C 0.130 3.870 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.426 0.574 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.066 0.934 46 H -0.007 1.007 47 H 0.247 0.753 48 H 0.019 0.981 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.898 -2.785 -16.874 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C -0.025 4.025 4 N -0.333 5.333 5 C 0.295 3.705 6 O -0.435 6.435 7 C -0.178 4.178 8 C -0.740 4.740 9 S 2.736 3.264 10 O -0.970 6.970 11 O -0.975 6.975 12 N -0.880 5.880 13 C -0.078 4.078 14 C 0.048 3.952 15 H 0.134 0.866 16 C -0.179 4.179 17 C 0.036 3.964 18 N -0.344 5.344 19 C -0.365 4.365 20 H 0.092 0.908 21 C -0.260 4.260 22 N -0.599 5.599 23 Si 0.809 3.191 24 H -0.193 1.193 25 H -0.214 1.214 26 H -0.219 1.219 27 C 0.004 3.996 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.262 0.738 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.011 0.989 47 H 0.056 0.944 48 H 0.037 0.963 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -17.016 -2.943 -16.865 24.138 hybrid contribution 1.955 0.731 0.696 2.200 sum -15.061 -2.212 -16.169 22.207 Atomic orbital electron populations 1.21696 0.93473 1.02504 1.02851 1.21981 0.97398 0.96272 1.02580 1.22112 0.76700 0.98224 1.05482 1.48027 1.07871 1.72829 1.04527 1.20836 0.87790 0.75915 0.85990 1.90802 1.15700 1.49393 1.87601 1.21589 0.98193 1.07832 0.90171 1.30403 1.12878 1.13634 1.17084 1.03903 0.73830 0.72950 0.75709 1.93569 1.72059 1.46594 1.84805 1.93570 1.72540 1.46168 1.85191 1.55131 1.53127 1.29266 1.50432 1.21773 0.94112 0.87423 1.04501 1.21913 0.92931 0.94349 0.86016 0.86631 1.23184 0.96952 0.97289 1.00491 1.21591 0.97656 0.84284 0.92871 1.44588 1.12181 1.07173 1.70496 1.19440 0.92190 0.92415 1.32483 0.90812 1.25626 1.01020 0.97783 1.01562 1.70072 1.29066 1.12486 1.48279 0.84969 0.78928 0.78025 0.77152 1.19343 1.21413 1.21853 1.21616 0.87003 0.95612 0.95361 0.91386 0.92242 0.91902 0.91818 0.92270 0.87843 0.88588 0.85164 0.85108 0.84157 0.83981 0.73791 0.91497 0.87681 0.91366 0.90143 0.91792 0.91598 0.98868 0.94372 0.96318 0.96016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.14 -2.10 6.26 30.60 0.19 -1.91 16 3 C 0.10 1.56 5.19 86.38 0.45 2.00 16 4 N -0.60 -15.91 2.54 -791.24 -2.01 -17.92 16 5 C 0.51 14.86 6.78 87.66 0.59 15.46 16 6 O -0.56 -22.46 12.33 -3.01 -0.04 -22.50 16 7 C -0.14 -2.60 4.26 29.85 0.13 -2.48 16 8 C -0.61 -11.06 5.31 71.98 0.38 -10.68 16 9 S 2.64 45.17 5.46 -56.49 -0.31 44.86 16 10 O -0.98 -22.04 17.74 -127.65 -2.26 -24.31 16 11 O -0.98 -22.24 18.08 -127.65 -2.31 -24.55 16 12 N -1.12 -14.08 6.08 -206.54 -1.25 -15.34 16 13 C 0.07 0.69 11.03 127.77 1.41 2.10 16 14 C 0.15 5.24 3.44 46.18 0.16 5.40 16 15 H 0.12 3.38 7.88 -2.39 -0.02 3.36 16 16 C -0.14 -5.67 6.40 31.99 0.20 -5.47 16 17 C 0.16 8.48 5.89 86.86 0.51 8.99 16 18 N -0.62 -34.26 3.39 -691.99 -2.35 -36.61 16 19 C -0.24 -14.16 10.27 84.03 0.86 -13.30 16 20 H 0.07 4.30 7.83 -2.91 -0.02 4.28 16 21 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 22 N -0.95 -59.01 10.09 21.65 0.22 -58.79 16 23 Si 0.98 47.73 29.55 68.60 2.03 49.76 16 24 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 27 C 0.13 5.83 6.49 86.73 0.56 6.39 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.95 7.22 -2.39 -0.02 0.93 16 32 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.10 1.16 6.44 -2.39 -0.02 1.15 16 34 H 0.10 1.34 7.96 -2.39 -0.02 1.32 16 35 H 0.13 1.82 7.19 -2.39 -0.02 1.80 16 36 H 0.13 1.81 7.40 -2.39 -0.02 1.79 16 37 H 0.14 2.65 8.10 -2.39 -0.02 2.63 16 38 H 0.14 2.52 7.73 -2.39 -0.02 2.50 16 39 H 0.43 3.98 8.92 -96.74 -0.86 3.12 16 40 H 0.07 0.72 8.04 -2.39 -0.02 0.70 16 41 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.07 0.64 7.73 -2.39 -0.02 0.62 16 43 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 44 H 0.06 2.87 5.81 -2.39 -0.01 2.85 16 45 H 0.07 4.00 5.87 -2.39 -0.01 3.99 16 46 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 48 H 0.02 0.90 6.28 -2.39 -0.01 0.89 16 49 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -87.29 397.15 -1.56 -88.86 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.09 Total: 14.45 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 6.63 Total: 2.09 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -5.39 Total: -128.66 kcal Atomic # 8 Polarization: -66.74 SS G_CDS: -4.61 Total: -71.35 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Atomic # 16 Polarization: 45.17 SS G_CDS: -0.31 Total: 44.86 kcal Total: -87.29 -1.56 -88.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567682982.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.169 kcal (2) G-P(sol) polarization free energy of solvation -87.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds