Wall clock time and date at job start Wed Apr 1 2020 05:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47015 * 2 1 4 4 N 1.46497 * 109.46873 * 239.99631 * 2 1 3 5 5 S 1.65595 * 119.99997 * 95.00691 * 4 2 1 6 6 C 1.81397 * 104.45281 * 64.99365 * 5 4 2 7 7 O 1.42098 * 104.28320 * 181.06716 * 5 4 2 8 8 O 1.42103 * 104.27629 * 308.92497 * 5 4 2 9 9 C 1.50700 * 109.46653 * 119.99916 * 2 1 3 10 10 O 1.21281 * 120.00002 * 120.00378 * 9 2 1 11 11 N 1.34778 * 120.00253 * 299.71951 * 9 2 1 12 12 C 1.46500 * 120.00387 * 180.27547 * 11 9 2 13 13 C 1.52995 * 109.47485 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.49500 * 300.00598 * 13 12 11 15 15 C 1.53032 * 109.49895 * 179.97438 * 13 12 11 16 16 C 1.53037 * 109.53987 * 178.71230 * 15 13 12 17 17 C 1.53192 * 109.33834 * 61.31832 * 16 15 13 18 18 N 1.46929 * 108.77364 * 305.38201 * 17 16 15 19 19 C 1.36939 * 120.62764 * 233.62957 * 18 17 16 20 20 H 1.07994 * 120.00043 * 27.66875 * 19 18 17 21 21 C 1.38820 * 119.99738 * 207.67057 * 19 18 17 22 22 N 1.31622 * 119.99599 * 17.36506 * 21 19 18 23 23 Si 1.86791 * 119.99807 * 197.35863 * 21 19 18 24 24 H 1.48500 * 109.47332 * 60.00290 * 23 21 19 25 25 H 1.48498 * 109.46912 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47278 * 300.00048 * 23 21 19 27 27 C 1.46922 * 118.73868 * 53.60876 * 18 17 16 28 28 H 1.08998 * 109.46768 * 299.99989 * 1 2 3 29 29 H 1.08999 * 109.46512 * 60.00227 * 1 2 3 30 30 H 1.08994 * 109.47015 * 180.02562 * 1 2 3 31 31 H 0.97005 * 120.00602 * 274.99545 * 4 2 1 32 32 H 1.09004 * 109.47080 * 59.99990 * 6 5 4 33 33 H 1.09003 * 109.47330 * 180.02562 * 6 5 4 34 34 H 1.09004 * 109.47309 * 300.00410 * 6 5 4 35 35 H 0.96999 * 119.99818 * 0.28609 * 11 9 2 36 36 H 1.08997 * 109.47073 * 300.01137 * 12 11 9 37 37 H 1.09007 * 109.46824 * 60.00139 * 12 11 9 38 38 H 1.08996 * 109.47321 * 59.99536 * 14 13 12 39 39 H 1.08996 * 109.47021 * 180.02562 * 14 13 12 40 40 H 1.09006 * 109.47103 * 299.99579 * 14 13 12 41 41 H 1.08997 * 109.46276 * 298.70516 * 15 13 12 42 42 H 1.09004 * 109.46029 * 58.66575 * 15 13 12 43 43 H 1.08998 * 109.47583 * 301.36370 * 16 15 13 44 44 H 1.09004 * 109.50101 * 181.28069 * 16 15 13 45 45 H 1.09001 * 109.58992 * 185.59086 * 17 16 15 46 46 H 1.09007 * 109.70328 * 65.23658 * 17 16 15 47 47 H 0.97001 * 119.98959 * 180.02562 * 22 21 19 48 48 H 1.09005 * 109.58774 * 186.60499 * 27 18 17 49 49 H 1.08998 * 109.70915 * 66.25081 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 16 2.4123 0.1770 -2.5504 6 6 3.8314 1.1871 -2.0440 7 8 2.8124 -0.8077 -3.4936 8 8 1.2753 0.9965 -2.7846 9 6 2.0323 -0.7104 1.2305 10 8 2.7296 -1.6965 1.1193 11 7 1.7113 -0.2467 2.4546 12 6 2.2045 -0.9337 3.6508 13 6 1.6987 -0.2096 4.9000 14 6 2.2072 1.2334 4.8948 15 6 2.2130 -0.9272 6.1499 16 6 1.7341 -0.1852 7.3997 17 6 0.2026 -0.1878 7.4357 18 7 -0.3010 0.3695 6.1729 19 6 -1.1891 1.4118 6.1754 20 1 -1.1969 2.1126 6.9970 21 6 -2.0794 1.5676 5.1217 22 7 -2.3165 0.5618 4.3065 23 14 -2.9408 3.2043 4.8611 24 1 -1.9279 4.2664 4.6348 25 1 -3.8327 3.1113 3.6774 26 1 -3.7464 3.5368 6.0635 27 6 0.1668 -0.2125 4.9076 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.1111 -1.6563 -1.1948 32 1 4.6460 0.5360 -1.7266 33 1 4.1607 1.7983 -2.8843 34 1 3.5401 1.8341 -1.2166 35 1 1.1536 0.5420 2.5436 36 1 1.8417 -1.9615 3.6550 37 1 3.2946 -0.9333 3.6466 38 1 1.8403 1.7448 4.0050 39 1 1.8470 1.7488 5.7851 40 1 3.2973 1.2345 4.8909 41 1 1.8312 -1.9480 6.1656 42 1 3.3027 -0.9476 6.1344 43 1 2.0956 0.8428 7.3729 44 1 2.1197 -0.6838 8.2891 45 1 -0.1444 0.4232 8.2690 46 1 -0.1604 -1.2087 7.5551 47 1 -2.9383 0.6708 3.5700 48 1 -0.2039 0.3822 4.0727 49 1 -0.1971 -1.2360 4.8170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569722516.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:17 Heat of formation + Delta-G solvation = -93.617698 kcal Electronic energy + Delta-G solvation = -30535.994351 eV Core-core repulsion = 26432.698860 eV Total energy + Delta-G solvation = -4103.295491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.04881 -38.52585 -37.31978 -36.17825 -35.59910 -34.84745 -33.30923 -31.59497 -30.08850 -29.82660 -29.65209 -26.67830 -25.85967 -25.36171 -23.86263 -22.22975 -20.70711 -20.22958 -19.75916 -18.46856 -17.93274 -17.17344 -16.74175 -16.49389 -16.15126 -15.66194 -15.36939 -14.99499 -14.55699 -14.11866 -13.99852 -13.97955 -13.65737 -13.49280 -13.44106 -13.24092 -13.16337 -12.86235 -12.52761 -12.32788 -12.30776 -12.24589 -12.17356 -11.84880 -11.77065 -11.63914 -11.38410 -11.32952 -11.02178 -10.92183 -10.70997 -10.47480 -10.26353 -10.17439 -10.09182 -9.89373 -9.71262 -9.46963 -9.44583 -8.84812 -8.54883 -6.73859 -5.87182 -3.28930 0.02118 2.38844 2.63830 3.29460 3.31296 3.38664 3.39487 3.61196 3.94470 4.39425 4.41927 4.49253 4.70489 4.74413 4.96884 5.04457 5.20275 5.22148 5.36106 5.36617 5.44037 5.51941 5.70337 5.77854 5.87361 5.92649 5.96287 6.00297 6.09461 6.17696 6.26485 6.33738 6.36648 6.46780 6.52729 6.64999 6.76248 6.80151 6.80770 6.89523 6.97665 7.20920 7.49179 7.64709 7.71412 8.26890 8.35786 9.13100 9.76094 10.33538 11.20742 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.003308 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.305391 B = 8461.983641 C = 9998.614889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.135 3.865 3 H 0.105 0.895 4 N -1.099 6.099 5 S 2.617 3.383 6 C -0.677 4.677 7 O -0.958 6.958 8 O -0.952 6.952 9 C 0.507 3.493 10 O -0.542 6.542 11 N -0.711 5.711 12 C 0.136 3.864 13 C -0.104 4.104 14 C -0.126 4.126 15 C -0.095 4.095 16 C -0.135 4.135 17 C 0.143 3.857 18 N -0.588 5.588 19 C -0.251 4.251 20 H 0.064 0.936 21 C 0.005 3.995 22 N -0.901 5.901 23 Si 0.897 3.103 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.186 3.814 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.426 0.574 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.408 0.592 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.035 0.965 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.016 0.984 47 H 0.255 0.745 48 H 0.089 0.911 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.014 0.928 -7.116 13.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.024 3.976 3 H 0.123 0.877 4 N -0.860 5.860 5 S 2.708 3.292 6 C -0.826 4.826 7 O -0.949 6.949 8 O -0.942 6.942 9 C 0.291 3.709 10 O -0.420 6.420 11 N -0.363 5.363 12 C 0.012 3.988 13 C -0.106 4.106 14 C -0.183 4.183 15 C -0.133 4.133 16 C -0.174 4.174 17 C 0.016 3.984 18 N -0.310 5.310 19 C -0.381 4.381 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.546 5.546 23 Si 0.727 3.273 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.210 1.210 27 C 0.059 3.941 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.263 0.737 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.245 0.755 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.034 0.966 47 H 0.065 0.935 48 H 0.107 0.893 49 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 11.920 0.381 -8.141 14.440 hybrid contribution -0.188 0.995 0.476 1.119 sum 11.732 1.376 -7.666 14.081 Atomic orbital electron populations 1.22303 0.91656 1.04286 1.04656 1.20640 0.96950 0.95816 0.84225 0.87740 1.55435 1.81586 1.20388 1.28549 1.04705 0.76410 0.74978 0.73093 1.30567 1.22229 1.16807 1.13031 1.93622 1.84556 1.57751 1.58938 1.93638 1.46118 1.70770 1.83674 1.20543 0.80486 0.85069 0.84832 1.90672 1.38326 1.26291 1.86699 1.46073 1.52719 1.32252 1.05282 1.21413 0.97932 0.96199 0.83260 1.21560 1.01347 0.95220 0.92489 1.21727 0.98235 0.95759 1.02616 1.21339 0.98642 0.98785 0.94532 1.22041 0.99071 1.00141 0.96144 1.20933 0.90964 0.96428 0.90032 1.43972 1.49658 1.38073 0.99334 1.19130 1.10315 1.01676 1.06931 0.91798 1.24989 0.97007 0.97233 1.00180 1.70030 1.36939 1.28669 1.18951 0.86453 0.79277 0.84051 0.77514 1.21050 1.21563 1.20954 1.20786 0.85586 0.97122 0.90567 0.90027 0.89795 0.91155 0.73693 0.85057 0.85313 0.85440 0.75522 0.91693 0.92193 0.93687 0.90903 0.94552 0.92564 0.93423 0.91960 0.93211 0.92953 0.96560 0.93544 0.89334 0.96443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.42 37.16 0.35 -1.66 16 2 C 0.14 1.47 3.09 -69.08 -0.21 1.25 16 3 H 0.10 0.81 7.15 -51.93 -0.37 0.44 16 4 N -1.10 -11.22 5.15 -5.88 -0.03 -11.25 16 5 S 2.62 24.63 6.02 -107.50 -0.65 23.98 16 6 C -0.68 -4.08 10.78 101.05 1.09 -2.99 16 7 O -0.96 -12.21 18.08 -57.54 -1.04 -13.25 16 8 O -0.95 -11.79 17.11 -57.54 -0.98 -12.77 16 9 C 0.51 6.88 7.22 -10.98 -0.08 6.80 16 10 O -0.54 -8.80 15.99 5.56 0.09 -8.71 16 11 N -0.71 -9.85 4.89 -60.30 -0.29 -10.14 16 12 C 0.14 2.02 4.57 -4.04 -0.02 2.00 16 13 C -0.10 -1.67 0.53 -154.39 -0.08 -1.75 16 14 C -0.13 -1.94 7.81 37.16 0.29 -1.65 16 15 C -0.09 -1.43 4.71 -26.70 -0.13 -1.56 16 16 C -0.13 -2.12 5.74 -26.61 -0.15 -2.27 16 17 C 0.14 2.77 6.52 -3.71 -0.02 2.74 16 18 N -0.59 -13.24 2.44 -172.32 -0.42 -13.66 16 19 C -0.25 -6.29 9.59 -15.06 -0.14 -6.44 16 20 H 0.06 1.60 7.89 -52.49 -0.41 1.19 16 21 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 22 N -0.90 -23.76 11.19 55.49 0.62 -23.14 16 23 Si 0.90 20.15 29.59 -169.99 -5.03 15.13 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 C 0.19 3.83 3.73 -3.71 -0.01 3.82 16 28 H 0.08 1.00 7.57 -51.93 -0.39 0.60 16 29 H 0.08 0.98 7.42 -51.93 -0.39 0.60 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.43 4.49 8.17 -34.46 -0.28 4.21 16 32 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.13 0.62 7.44 -51.92 -0.39 0.23 16 35 H 0.41 5.56 5.65 -40.82 -0.23 5.33 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.04 0.67 6.86 -51.93 -0.36 0.32 16 39 H 0.07 1.27 5.97 -51.93 -0.31 0.96 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.99 6.33 -51.93 -0.33 0.66 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 46 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 47 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 48 H 0.09 1.97 4.94 -51.93 -0.26 1.72 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 391.59 15.07 5.90 5.90 Total: -1.00 -32.88 391.59 -8.96 -41.84 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -7.91 Total: 7.76 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 0.79 Total: -1.68 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.12 Total: -58.20 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.94 Total: -34.73 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.13 kcal Atomic # 16 Polarization: 24.63 SS G_CDS: -0.65 Total: 23.98 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.88 -8.96 -41.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569722516.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.778 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds