Wall clock time and date at job start Wed Apr 1 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47015 * 2 1 4 4 N 1.46497 * 109.46873 * 239.99631 * 2 1 3 5 5 S 1.65595 * 119.99997 * 95.00691 * 4 2 1 6 6 C 1.81397 * 104.45281 * 64.99365 * 5 4 2 7 7 O 1.42098 * 104.28320 * 181.06716 * 5 4 2 8 8 O 1.42103 * 104.27629 * 308.92497 * 5 4 2 9 9 C 1.50700 * 109.46653 * 119.99916 * 2 1 3 10 10 O 1.21281 * 120.00002 * 120.00378 * 9 2 1 11 11 N 1.34778 * 120.00253 * 299.71951 * 9 2 1 12 12 C 1.46500 * 120.00387 * 180.27547 * 11 9 2 13 13 C 1.52995 * 109.47485 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.49500 * 300.00598 * 13 12 11 15 15 C 1.53032 * 109.49895 * 179.97438 * 13 12 11 16 16 C 1.53037 * 109.53987 * 178.71230 * 15 13 12 17 17 C 1.53192 * 109.33834 * 61.31832 * 16 15 13 18 18 N 1.46929 * 108.77364 * 305.38201 * 17 16 15 19 19 C 1.36939 * 120.62764 * 233.62957 * 18 17 16 20 20 H 1.07994 * 120.00043 * 27.66875 * 19 18 17 21 21 C 1.38820 * 119.99738 * 207.67057 * 19 18 17 22 22 N 1.31622 * 119.99599 * 17.36506 * 21 19 18 23 23 Si 1.86791 * 119.99807 * 197.35863 * 21 19 18 24 24 H 1.48500 * 109.47332 * 60.00290 * 23 21 19 25 25 H 1.48498 * 109.46912 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47278 * 300.00048 * 23 21 19 27 27 C 1.46922 * 118.73868 * 53.60876 * 18 17 16 28 28 H 1.08998 * 109.46768 * 299.99989 * 1 2 3 29 29 H 1.08999 * 109.46512 * 60.00227 * 1 2 3 30 30 H 1.08994 * 109.47015 * 180.02562 * 1 2 3 31 31 H 0.97005 * 120.00602 * 274.99545 * 4 2 1 32 32 H 1.09004 * 109.47080 * 59.99990 * 6 5 4 33 33 H 1.09003 * 109.47330 * 180.02562 * 6 5 4 34 34 H 1.09004 * 109.47309 * 300.00410 * 6 5 4 35 35 H 0.96999 * 119.99818 * 0.28609 * 11 9 2 36 36 H 1.08997 * 109.47073 * 300.01137 * 12 11 9 37 37 H 1.09007 * 109.46824 * 60.00139 * 12 11 9 38 38 H 1.08996 * 109.47321 * 59.99536 * 14 13 12 39 39 H 1.08996 * 109.47021 * 180.02562 * 14 13 12 40 40 H 1.09006 * 109.47103 * 299.99579 * 14 13 12 41 41 H 1.08997 * 109.46276 * 298.70516 * 15 13 12 42 42 H 1.09004 * 109.46029 * 58.66575 * 15 13 12 43 43 H 1.08998 * 109.47583 * 301.36370 * 16 15 13 44 44 H 1.09004 * 109.50101 * 181.28069 * 16 15 13 45 45 H 1.09001 * 109.58992 * 185.59086 * 17 16 15 46 46 H 1.09007 * 109.70328 * 65.23658 * 17 16 15 47 47 H 0.97001 * 119.98959 * 180.02562 * 22 21 19 48 48 H 1.09005 * 109.58774 * 186.60499 * 27 18 17 49 49 H 1.08998 * 109.70915 * 66.25081 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 16 2.4123 0.1770 -2.5504 6 6 3.8314 1.1871 -2.0440 7 8 2.8124 -0.8077 -3.4936 8 8 1.2753 0.9965 -2.7846 9 6 2.0323 -0.7104 1.2305 10 8 2.7296 -1.6965 1.1193 11 7 1.7113 -0.2467 2.4546 12 6 2.2045 -0.9337 3.6508 13 6 1.6987 -0.2096 4.9000 14 6 2.2072 1.2334 4.8948 15 6 2.2130 -0.9272 6.1499 16 6 1.7341 -0.1852 7.3997 17 6 0.2026 -0.1878 7.4357 18 7 -0.3010 0.3695 6.1729 19 6 -1.1891 1.4118 6.1754 20 1 -1.1969 2.1126 6.9970 21 6 -2.0794 1.5676 5.1217 22 7 -2.3165 0.5618 4.3065 23 14 -2.9408 3.2043 4.8611 24 1 -1.9279 4.2664 4.6348 25 1 -3.8327 3.1113 3.6774 26 1 -3.7464 3.5368 6.0635 27 6 0.1668 -0.2125 4.9076 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.1111 -1.6563 -1.1948 32 1 4.6460 0.5360 -1.7266 33 1 4.1607 1.7983 -2.8843 34 1 3.5401 1.8341 -1.2166 35 1 1.1536 0.5420 2.5436 36 1 1.8417 -1.9615 3.6550 37 1 3.2946 -0.9333 3.6466 38 1 1.8403 1.7448 4.0050 39 1 1.8470 1.7488 5.7851 40 1 3.2973 1.2345 4.8909 41 1 1.8312 -1.9480 6.1656 42 1 3.3027 -0.9476 6.1344 43 1 2.0956 0.8428 7.3729 44 1 2.1197 -0.6838 8.2891 45 1 -0.1444 0.4232 8.2690 46 1 -0.1604 -1.2087 7.5551 47 1 -2.9383 0.6708 3.5700 48 1 -0.2039 0.3822 4.0727 49 1 -0.1971 -1.2360 4.8170 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569722516.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:16 Heat of formation + Delta-G solvation = -118.631499 kcal Electronic energy + Delta-G solvation = -30537.079031 eV Core-core repulsion = 26432.698860 eV Total energy + Delta-G solvation = -4104.380171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.20008 -39.87924 -38.18749 -37.04353 -36.61476 -36.15701 -34.88335 -33.02498 -31.63628 -30.76447 -30.28318 -27.94761 -27.33972 -26.94403 -24.93955 -23.79784 -22.12597 -21.32210 -20.54411 -19.68399 -19.03872 -18.46151 -18.13018 -17.32824 -17.15665 -16.83490 -16.57136 -16.29956 -15.79725 -15.53534 -15.40009 -15.20433 -14.86414 -14.66409 -14.39327 -14.19281 -14.04938 -13.96940 -13.77783 -13.67200 -13.42130 -13.19958 -13.10031 -13.05248 -12.98470 -12.78876 -12.67125 -12.65848 -12.51444 -12.23545 -12.13553 -12.04929 -11.81296 -11.67966 -11.36974 -11.21084 -10.96814 -10.92879 -10.48944 -10.45430 -10.01421 -8.57524 -7.79229 -5.23315 -0.69397 1.51809 1.54563 1.54776 1.60271 1.61549 2.27228 2.57053 2.88828 3.25490 3.33148 3.53109 3.66862 3.84236 3.99221 4.02259 4.02979 4.08680 4.09964 4.17278 4.35243 4.40466 4.55182 4.60685 4.77223 4.79657 4.83108 4.85056 4.91719 5.00079 5.03105 5.09033 5.16681 5.21382 5.27529 5.33575 5.37391 5.45377 5.51548 5.56513 5.68300 5.77954 5.84326 5.94418 6.46639 6.53322 7.16969 7.23758 7.94273 8.46743 9.25676 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.003308 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.305391 B = 8461.983641 C = 9998.614889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.138 3.862 3 H 0.143 0.857 4 N -1.103 6.103 5 S 2.625 3.375 6 C -0.656 4.656 7 O -0.997 6.997 8 O -0.987 6.987 9 C 0.509 3.491 10 O -0.568 6.568 11 N -0.711 5.711 12 C 0.142 3.858 13 C -0.093 4.093 14 C -0.119 4.119 15 C -0.095 4.095 16 C -0.123 4.123 17 C 0.135 3.865 18 N -0.604 5.604 19 C -0.258 4.258 20 H 0.061 0.939 21 C -0.038 4.038 22 N -0.928 5.928 23 Si 0.954 3.046 24 H -0.274 1.274 25 H -0.296 1.296 26 H -0.286 1.286 27 C 0.197 3.803 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.423 0.577 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.409 0.591 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.049 0.951 46 H 0.004 0.996 47 H 0.250 0.750 48 H 0.070 0.930 49 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.611 2.545 -6.845 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.027 3.973 3 H 0.160 0.840 4 N -0.861 5.861 5 S 2.720 3.280 6 C -0.810 4.810 7 O -0.987 6.987 8 O -0.977 6.977 9 C 0.294 3.706 10 O -0.448 6.448 11 N -0.363 5.363 12 C 0.018 3.982 13 C -0.095 4.095 14 C -0.177 4.177 15 C -0.133 4.133 16 C -0.162 4.162 17 C 0.010 3.990 18 N -0.326 5.326 19 C -0.388 4.388 20 H 0.079 0.921 21 C -0.234 4.234 22 N -0.574 5.574 23 Si 0.783 3.217 24 H -0.200 1.200 25 H -0.223 1.223 26 H -0.212 1.212 27 C 0.071 3.929 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.259 0.741 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.246 0.754 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.022 0.978 47 H 0.059 0.941 48 H 0.088 0.912 49 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges 14.500 1.982 -7.860 16.612 hybrid contribution -1.006 0.465 0.470 1.204 sum 13.493 2.447 -7.390 15.578 Atomic orbital electron populations 1.22272 0.92735 1.03383 1.04376 1.20691 0.96030 0.97447 0.83148 0.83966 1.55398 1.82068 1.20400 1.28238 1.04304 0.76849 0.74452 0.72345 1.30373 1.19494 1.16447 1.14679 1.93570 1.85141 1.59585 1.60442 1.93591 1.48886 1.71036 1.84197 1.20929 0.79778 0.84627 0.85245 1.90660 1.39654 1.27418 1.87059 1.46079 1.52663 1.32211 1.05317 1.21290 0.98730 0.95132 0.83044 1.21359 0.97622 0.96560 0.93914 1.21649 0.99904 0.94400 1.01714 1.21368 1.00462 0.98010 0.93442 1.21911 0.95690 1.00867 0.97707 1.21095 0.93844 0.95359 0.88708 1.44221 1.49658 1.37870 1.00901 1.19373 1.10508 1.02213 1.06704 0.92126 1.25561 0.97932 0.99622 1.00285 1.70172 1.37699 1.30110 1.19369 0.85565 0.78283 0.81177 0.76715 1.19969 1.22263 1.21232 1.20576 0.88820 0.94181 0.89351 0.90666 0.89621 0.92468 0.74082 0.83694 0.83051 0.83327 0.75354 0.93420 0.90396 0.93616 0.92845 0.91700 0.93295 0.90266 0.91622 0.90503 0.93277 0.97755 0.94118 0.91214 1.00290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 9.42 71.98 0.68 -3.33 16 2 C 0.14 2.83 3.09 44.25 0.14 2.96 16 3 H 0.14 1.79 7.15 -2.39 -0.02 1.78 16 4 N -1.10 -21.62 5.15 -172.52 -0.89 -22.51 16 5 S 2.62 46.31 6.02 -56.49 -0.34 45.97 16 6 C -0.66 -5.44 10.78 113.37 1.22 -4.21 16 7 O -1.00 -25.16 18.08 -127.65 -2.31 -27.47 16 8 O -0.99 -23.72 17.11 -127.65 -2.18 -25.90 16 9 C 0.51 13.28 7.22 87.66 0.63 13.92 16 10 O -0.57 -17.94 15.99 -3.03 -0.05 -17.98 16 11 N -0.71 -19.01 4.89 -463.06 -2.27 -21.28 16 12 C 0.14 4.04 4.57 86.38 0.39 4.44 16 13 C -0.09 -2.86 0.53 -52.11 -0.03 -2.89 16 14 C -0.12 -3.39 7.81 71.98 0.56 -2.82 16 15 C -0.09 -2.65 4.71 30.62 0.14 -2.50 16 16 C -0.12 -3.60 5.74 30.67 0.18 -3.42 16 17 C 0.14 5.23 6.52 86.36 0.56 5.79 16 18 N -0.60 -27.49 2.44 -699.08 -1.70 -29.20 16 19 C -0.26 -13.04 9.59 84.04 0.81 -12.24 16 20 H 0.06 3.05 7.89 -2.91 -0.02 3.03 16 21 C -0.04 -1.95 4.91 84.86 0.42 -1.53 16 22 N -0.93 -50.19 11.19 21.65 0.24 -49.95 16 23 Si 0.95 41.66 29.59 68.60 2.03 43.69 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.30 -13.17 7.11 99.48 0.71 -12.46 16 26 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 27 C 0.20 8.27 3.73 86.36 0.32 8.59 16 28 H 0.07 1.87 7.57 -2.39 -0.02 1.85 16 29 H 0.08 2.01 7.42 -2.39 -0.02 1.99 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.42 8.92 8.17 -96.75 -0.79 8.13 16 32 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.15 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.15 0.72 7.44 -2.39 -0.02 0.70 16 35 H 0.41 10.88 5.65 -92.71 -0.52 10.35 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.04 1.27 6.86 -2.39 -0.02 1.26 16 39 H 0.05 1.74 5.97 -2.39 -0.01 1.73 16 40 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 1.91 6.33 -2.39 -0.02 1.90 16 44 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 46 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 47 H 0.25 13.25 8.31 -92.71 -0.77 12.48 16 48 H 0.07 3.19 4.94 -2.38 -0.01 3.17 16 49 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 Total: -1.00 -72.67 391.59 -1.79 -74.45 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.35 Total: 27.43 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 6.03 Total: 2.75 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -4.61 Total: -122.94 kcal Atomic # 8 Polarization: -66.82 SS G_CDS: -4.54 Total: -71.36 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 46.31 SS G_CDS: -0.34 Total: 45.97 kcal Total: -72.67 -1.79 -74.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569722516.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.178 kcal (2) G-P(sol) polarization free energy of solvation -72.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds