Wall clock time and date at job start Wed Apr 1 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46845 * 2 1 4 4 N 1.46491 * 109.47251 * 120.00467 * 2 1 3 5 5 S 1.65601 * 119.99895 * 264.99772 * 4 2 1 6 6 C 1.81406 * 104.44955 * 65.00185 * 5 4 2 7 7 O 1.42098 * 104.28113 * 308.92851 * 5 4 2 8 8 O 1.42107 * 104.27713 * 181.06985 * 5 4 2 9 9 C 1.50700 * 109.46851 * 240.00349 * 2 1 3 10 10 O 1.21276 * 119.99946 * 239.99988 * 9 2 1 11 11 N 1.34784 * 119.99939 * 60.00259 * 9 2 1 12 12 C 1.46497 * 119.99727 * 174.67119 * 11 9 2 13 13 C 1.52998 * 109.47246 * 303.88628 * 12 11 9 14 14 N 1.46497 * 109.47041 * 305.42160 * 13 12 11 15 15 C 1.36939 * 120.00032 * 175.03722 * 14 13 12 16 16 H 1.07999 * 120.00127 * 0.02562 * 15 14 13 17 17 C 1.38819 * 120.00145 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99825 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99805 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47557 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46945 * 120.00430 * 19 17 15 22 22 H 1.48498 * 109.46975 * 240.00086 * 19 17 15 23 23 C 1.53005 * 109.46795 * 183.88679 * 12 11 9 24 24 C 1.52998 * 109.47182 * 299.99988 * 23 12 11 25 25 C 1.53000 * 109.47076 * 300.00011 * 24 23 12 26 26 C 1.53005 * 109.47124 * 59.99953 * 25 24 23 27 27 C 1.52998 * 109.47182 * 299.99982 * 26 25 24 28 28 H 1.08993 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46694 * 299.99908 * 1 2 3 30 30 H 1.09001 * 109.47452 * 59.99377 * 1 2 3 31 31 H 0.97003 * 120.00174 * 84.99493 * 4 2 1 32 32 H 1.08998 * 109.47001 * 299.99959 * 6 5 4 33 33 H 1.09003 * 109.47248 * 179.97438 * 6 5 4 34 34 H 1.09007 * 109.47219 * 59.99964 * 6 5 4 35 35 H 0.97001 * 119.99599 * 354.66993 * 11 9 2 36 36 H 1.09001 * 109.47244 * 65.42279 * 13 12 11 37 37 H 1.08999 * 109.47375 * 185.42370 * 13 12 11 38 38 H 0.97007 * 120.00250 * 355.04195 * 14 13 12 39 39 H 0.96996 * 120.00173 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.47265 * 60.00194 * 23 12 11 41 41 H 1.08999 * 109.46932 * 179.97438 * 23 12 11 42 42 H 1.09001 * 109.47115 * 180.02562 * 24 23 12 43 43 H 1.08999 * 109.47230 * 60.00130 * 24 23 12 44 44 H 1.08999 * 109.47188 * 300.00144 * 25 24 23 45 45 H 1.09002 * 109.47050 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.46746 * 179.97438 * 26 25 24 47 47 H 1.08999 * 109.46932 * 60.00034 * 26 25 24 48 48 H 1.08999 * 109.47230 * 299.99870 * 27 26 25 49 49 H 1.09001 * 109.47115 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 16 2.4123 0.1771 2.5504 6 6 0.8408 0.8988 3.0985 7 8 3.2876 1.1905 2.0751 8 8 2.8607 -0.8031 3.4764 9 6 2.0323 -0.7103 -1.2305 10 8 2.7295 -1.6964 -1.1193 11 7 1.7067 -0.2497 -2.4546 12 6 2.2883 -0.8682 -3.6485 13 6 3.8147 -0.8261 -3.5526 14 7 4.2520 0.5539 -3.3281 15 6 5.5759 0.8253 -3.1072 16 1 6.2977 0.0221 -3.0989 17 6 5.9904 2.1331 -2.8950 18 7 5.1107 3.1121 -2.9056 19 14 7.7964 2.5033 -2.5944 20 1 8.5740 1.2388 -2.6324 21 1 8.2954 3.4225 -3.6486 22 1 7.9558 3.1431 -1.2638 23 6 1.8341 -0.1019 -4.8925 24 6 0.3078 -0.1439 -4.9885 25 6 -0.1571 -1.5983 -5.0874 26 6 0.2971 -2.3646 -3.8434 27 6 1.8234 -2.3225 -3.7475 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.1110 -1.6563 1.1947 32 1 0.4387 1.5351 2.3102 33 1 1.0078 1.4937 3.9965 34 1 0.1316 0.1007 3.3185 35 1 1.0872 0.4912 -2.5450 36 1 4.1440 -1.4512 -2.7225 37 1 4.2476 -1.1978 -4.4813 38 1 3.6037 1.2755 -3.3358 39 1 5.4002 4.0259 -2.7570 40 1 2.1653 0.9342 -4.8221 41 1 2.2672 -0.5617 -5.7808 42 1 -0.0157 0.4016 -5.8749 43 1 -0.1250 0.3162 -4.1002 44 1 0.2756 -2.0584 -5.9757 45 1 -1.2445 -1.6282 -5.1562 46 1 -0.0345 -3.4006 -3.9138 47 1 -0.1357 -1.9045 -2.9551 48 1 2.2562 -2.7827 -4.6358 49 1 2.1469 -2.8681 -2.8610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570803502.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:58 Heat of formation + Delta-G solvation = -102.459732 kcal Electronic energy + Delta-G solvation = -31303.477210 eV Core-core repulsion = 27199.798300 eV Total energy + Delta-G solvation = -4103.678911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.46053 -38.13189 -37.05778 -35.90027 -35.39953 -34.56893 -33.25458 -31.40127 -30.67666 -30.04119 -29.61390 -28.87355 -25.23017 -24.38767 -22.97487 -22.28418 -20.91283 -20.30309 -19.57647 -18.78730 -18.17148 -17.16239 -17.04950 -16.22335 -15.98136 -15.44669 -15.14214 -14.96317 -14.69662 -14.29843 -14.00958 -13.94568 -13.75985 -13.58356 -13.32171 -13.17680 -12.98824 -12.86261 -12.46014 -12.25178 -12.12871 -12.06988 -12.04996 -12.00175 -11.86949 -11.74434 -11.58255 -11.26137 -11.06922 -10.96234 -10.79611 -10.72096 -10.53669 -10.15302 -10.04316 -9.91039 -9.72154 -9.57752 -9.13083 -8.69787 -8.51562 -6.76524 -5.65938 -2.91391 0.20540 2.62602 2.99205 3.48389 3.53289 3.59904 3.61279 3.80736 4.14283 4.52211 4.63364 4.70016 4.80442 4.82146 4.87936 4.89767 4.93880 5.02143 5.22847 5.29128 5.33695 5.35457 5.48567 5.58054 5.63846 5.69643 5.71115 5.77027 5.81662 5.86088 5.87393 6.10168 6.13119 6.24224 6.31033 6.33196 6.40691 6.50754 6.62025 6.69022 6.95394 7.00104 7.14867 7.83883 7.90616 8.54051 8.61034 9.66020 10.22645 10.58290 11.57493 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006943 B = 0.005727 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4032.109058 B = 4888.240320 C = 7977.284462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.124 3.876 3 H 0.121 0.879 4 N -1.097 6.097 5 S 2.610 3.390 6 C -0.679 4.679 7 O -0.940 6.940 8 O -0.959 6.959 9 C 0.528 3.472 10 O -0.523 6.523 11 N -0.705 5.705 12 C 0.178 3.822 13 C 0.139 3.861 14 N -0.724 5.724 15 C -0.229 4.229 16 H 0.068 0.932 17 C -0.014 4.014 18 N -0.935 5.935 19 Si 0.903 3.097 20 H -0.282 1.282 21 H -0.294 1.294 22 H -0.291 1.291 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.112 4.112 27 C -0.127 4.127 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.424 0.576 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.395 0.605 36 H 0.048 0.952 37 H 0.018 0.982 38 H 0.381 0.619 39 H 0.252 0.748 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.271 -6.773 3.913 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.012 3.988 3 H 0.139 0.861 4 N -0.857 5.857 5 S 2.701 3.299 6 C -0.828 4.828 7 O -0.930 6.930 8 O -0.950 6.950 9 C 0.312 3.688 10 O -0.398 6.398 11 N -0.357 5.357 12 C 0.092 3.908 13 C 0.011 3.989 14 N -0.368 5.368 15 C -0.361 4.361 16 H 0.086 0.914 17 C -0.209 4.209 18 N -0.584 5.584 19 Si 0.735 3.265 20 H -0.207 1.207 21 H -0.221 1.221 22 H -0.219 1.219 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.150 4.150 27 C -0.166 4.166 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.260 0.740 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.230 0.770 36 H 0.066 0.934 37 H 0.036 0.964 38 H 0.215 0.785 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.711 -7.234 4.393 19.630 hybrid contribution -0.132 0.742 0.053 0.756 sum -17.844 -6.492 4.447 19.502 Atomic orbital electron populations 1.22422 0.93673 1.03721 1.03415 1.20727 0.94519 0.98229 0.85311 0.86104 1.55310 1.83982 1.20607 1.25756 1.04932 0.76610 0.74825 0.73536 1.30703 1.24977 1.14109 1.12977 1.93713 1.59980 1.60539 1.78753 1.93612 1.79327 1.59065 1.62961 1.20040 0.80103 0.84520 0.84158 1.90624 1.36986 1.26035 1.86179 1.45837 1.47823 1.36893 1.05178 1.20568 0.94435 0.92047 0.83721 1.21104 0.89505 0.89500 0.98840 1.42202 1.06440 1.01683 1.86501 1.19244 0.84792 0.92190 1.39832 0.91436 1.24649 0.97471 0.95732 1.03078 1.69633 1.32268 0.99037 1.57493 0.86159 0.85239 0.77728 0.77383 1.20686 1.22101 1.21862 1.21790 0.94868 1.02039 0.97097 1.21553 0.96181 0.96433 1.01452 1.21551 0.99770 0.95874 0.98401 1.21449 0.96226 0.99425 0.97881 1.21903 0.95165 0.96352 1.03199 0.91058 0.91331 0.90512 0.73957 0.85187 0.85374 0.85309 0.77046 0.93401 0.96418 0.78482 0.93812 0.90138 0.90606 0.92005 0.92326 0.92142 0.92636 0.92664 0.92241 0.91556 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.37 37.16 0.35 -0.95 16 2 C 0.12 1.53 3.23 -69.09 -0.22 1.31 16 3 H 0.12 1.61 7.48 -51.93 -0.39 1.22 16 4 N -1.10 -13.60 5.15 -5.88 -0.03 -13.63 16 5 S 2.61 32.60 6.08 -107.50 -0.65 31.95 16 6 C -0.68 -4.64 10.04 101.05 1.01 -3.62 16 7 O -0.94 -16.91 17.39 -57.54 -1.00 -17.91 16 8 O -0.96 -14.80 18.08 -57.54 -1.04 -15.84 16 9 C 0.53 8.32 6.63 -10.98 -0.07 8.24 16 10 O -0.52 -9.94 12.29 5.56 0.07 -9.87 16 11 N -0.71 -10.02 3.50 -47.61 -0.17 -10.19 16 12 C 0.18 2.74 0.32 -131.82 -0.04 2.70 16 13 C 0.14 2.91 4.79 -4.04 -0.02 2.89 16 14 N -0.72 -18.26 5.18 -59.91 -0.31 -18.57 16 15 C -0.23 -6.66 9.99 -15.06 -0.15 -6.81 16 16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 17 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 19 Si 0.90 23.68 29.55 -169.99 -5.02 18.66 16 20 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 22 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 23 C -0.12 -1.65 4.67 -26.73 -0.12 -1.78 16 24 C -0.12 -1.23 5.75 -26.73 -0.15 -1.38 16 25 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 26 C -0.11 -1.20 5.77 -26.73 -0.15 -1.35 16 27 C -0.13 -1.73 4.58 -26.73 -0.12 -1.85 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.36 5.78 -51.93 -0.30 0.06 16 30 H 0.08 0.47 7.45 -51.93 -0.39 0.09 16 31 H 0.42 5.19 8.17 -34.47 -0.28 4.91 16 32 H 0.13 0.71 6.77 -51.93 -0.35 0.36 16 33 H 0.13 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.13 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.39 4.65 6.47 -40.82 -0.26 4.39 16 36 H 0.05 1.13 6.26 -51.93 -0.32 0.81 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.38 9.74 6.46 -40.82 -0.26 9.48 16 39 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.08 1.30 7.11 -51.93 -0.37 0.93 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.55 6.79 -51.93 -0.35 0.20 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.63 7.60 -51.93 -0.39 0.23 16 48 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.08 1.30 6.28 -51.93 -0.33 0.98 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -39.35 388.35 -9.31 -48.66 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -7.78 Total: 13.04 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 0.05 Total: -4.41 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: 0.22 Total: -70.12 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.97 Total: -43.62 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.02 Total: 18.66 kcal Atomic # 16 Polarization: 32.60 SS G_CDS: -0.65 Total: 31.95 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.35 -9.31 -48.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570803502.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.799 kcal (2) G-P(sol) polarization free energy of solvation -39.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds