Wall clock time and date at job start Wed Apr 1 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46845 * 2 1 4 4 N 1.46491 * 109.47251 * 120.00467 * 2 1 3 5 5 S 1.65601 * 119.99895 * 264.99772 * 4 2 1 6 6 C 1.81406 * 104.44955 * 65.00185 * 5 4 2 7 7 O 1.42098 * 104.28113 * 308.92851 * 5 4 2 8 8 O 1.42107 * 104.27713 * 181.06985 * 5 4 2 9 9 C 1.50700 * 109.46851 * 240.00349 * 2 1 3 10 10 O 1.21276 * 119.99946 * 239.99988 * 9 2 1 11 11 N 1.34784 * 119.99939 * 60.00259 * 9 2 1 12 12 C 1.46497 * 119.99727 * 174.67119 * 11 9 2 13 13 C 1.52998 * 109.47246 * 303.88628 * 12 11 9 14 14 N 1.46497 * 109.47041 * 305.42160 * 13 12 11 15 15 C 1.36939 * 120.00032 * 175.03722 * 14 13 12 16 16 H 1.07999 * 120.00127 * 0.02562 * 15 14 13 17 17 C 1.38819 * 120.00145 * 179.97438 * 15 14 13 18 18 N 1.31617 * 119.99825 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99805 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47557 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46945 * 120.00430 * 19 17 15 22 22 H 1.48498 * 109.46975 * 240.00086 * 19 17 15 23 23 C 1.53005 * 109.46795 * 183.88679 * 12 11 9 24 24 C 1.52998 * 109.47182 * 299.99988 * 23 12 11 25 25 C 1.53000 * 109.47076 * 300.00011 * 24 23 12 26 26 C 1.53005 * 109.47124 * 59.99953 * 25 24 23 27 27 C 1.52998 * 109.47182 * 299.99982 * 26 25 24 28 28 H 1.08993 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46694 * 299.99908 * 1 2 3 30 30 H 1.09001 * 109.47452 * 59.99377 * 1 2 3 31 31 H 0.97003 * 120.00174 * 84.99493 * 4 2 1 32 32 H 1.08998 * 109.47001 * 299.99959 * 6 5 4 33 33 H 1.09003 * 109.47248 * 179.97438 * 6 5 4 34 34 H 1.09007 * 109.47219 * 59.99964 * 6 5 4 35 35 H 0.97001 * 119.99599 * 354.66993 * 11 9 2 36 36 H 1.09001 * 109.47244 * 65.42279 * 13 12 11 37 37 H 1.08999 * 109.47375 * 185.42370 * 13 12 11 38 38 H 0.97007 * 120.00250 * 355.04195 * 14 13 12 39 39 H 0.96996 * 120.00173 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.47265 * 60.00194 * 23 12 11 41 41 H 1.08999 * 109.46932 * 179.97438 * 23 12 11 42 42 H 1.09001 * 109.47115 * 180.02562 * 24 23 12 43 43 H 1.08999 * 109.47230 * 60.00130 * 24 23 12 44 44 H 1.08999 * 109.47188 * 300.00144 * 25 24 23 45 45 H 1.09002 * 109.47050 * 180.02562 * 25 24 23 46 46 H 1.08999 * 109.46746 * 179.97438 * 26 25 24 47 47 H 1.08999 * 109.46932 * 60.00034 * 26 25 24 48 48 H 1.08999 * 109.47230 * 299.99870 * 27 26 25 49 49 H 1.09001 * 109.47115 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 16 2.4123 0.1771 2.5504 6 6 0.8408 0.8988 3.0985 7 8 3.2876 1.1905 2.0751 8 8 2.8607 -0.8031 3.4764 9 6 2.0323 -0.7103 -1.2305 10 8 2.7295 -1.6964 -1.1193 11 7 1.7067 -0.2497 -2.4546 12 6 2.2883 -0.8682 -3.6485 13 6 3.8147 -0.8261 -3.5526 14 7 4.2520 0.5539 -3.3281 15 6 5.5759 0.8253 -3.1072 16 1 6.2977 0.0221 -3.0989 17 6 5.9904 2.1331 -2.8950 18 7 5.1107 3.1121 -2.9056 19 14 7.7964 2.5033 -2.5944 20 1 8.5740 1.2388 -2.6324 21 1 8.2954 3.4225 -3.6486 22 1 7.9558 3.1431 -1.2638 23 6 1.8341 -0.1019 -4.8925 24 6 0.3078 -0.1439 -4.9885 25 6 -0.1571 -1.5983 -5.0874 26 6 0.2971 -2.3646 -3.8434 27 6 1.8234 -2.3225 -3.7475 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.1110 -1.6563 1.1947 32 1 0.4387 1.5351 2.3102 33 1 1.0078 1.4937 3.9965 34 1 0.1316 0.1007 3.3185 35 1 1.0872 0.4912 -2.5450 36 1 4.1440 -1.4512 -2.7225 37 1 4.2476 -1.1978 -4.4813 38 1 3.6037 1.2755 -3.3358 39 1 5.4002 4.0259 -2.7570 40 1 2.1653 0.9342 -4.8221 41 1 2.2672 -0.5617 -5.7808 42 1 -0.0157 0.4016 -5.8749 43 1 -0.1250 0.3162 -4.1002 44 1 0.2756 -2.0584 -5.9757 45 1 -1.2445 -1.6282 -5.1562 46 1 -0.0345 -3.4006 -3.9138 47 1 -0.1357 -1.9045 -2.9551 48 1 2.2562 -2.7827 -4.6358 49 1 2.1469 -2.8681 -2.8610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570803502.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:57 Heat of formation + Delta-G solvation = -135.424437 kcal Electronic energy + Delta-G solvation = -31304.906667 eV Core-core repulsion = 27199.798300 eV Total energy + Delta-G solvation = -4105.108367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68085 -39.25503 -38.19008 -37.03764 -36.50914 -36.25692 -34.66804 -33.16473 -31.68851 -31.24306 -30.48094 -29.90605 -27.02001 -25.31350 -24.67760 -23.43902 -22.15474 -21.38831 -20.56562 -19.99934 -19.23670 -19.23343 -18.13627 -17.23590 -17.11243 -16.79081 -16.51157 -16.23345 -15.99115 -15.73411 -15.23211 -15.03498 -14.79175 -14.68150 -14.57932 -14.37230 -13.93282 -13.91927 -13.80962 -13.43673 -13.26017 -13.18758 -13.12257 -13.11041 -12.99624 -12.88548 -12.78981 -12.72574 -12.53679 -12.50449 -12.08595 -11.97118 -11.93907 -11.89010 -11.39835 -11.13069 -11.06397 -10.97476 -10.70423 -10.23391 -9.80808 -8.93058 -7.96307 -5.20504 -0.71176 1.39905 1.43731 1.51225 1.65927 1.77382 2.34818 2.54092 2.90859 3.27491 3.37120 3.56862 3.74896 3.89536 3.91463 4.01684 4.05477 4.13319 4.18051 4.20643 4.30272 4.42203 4.50934 4.56909 4.65253 4.67438 4.76641 4.84262 4.89821 4.91187 4.97848 5.06367 5.15933 5.20143 5.25945 5.29582 5.32448 5.36533 5.43260 5.46368 5.54824 5.59185 5.78682 6.01586 6.27830 6.73727 7.35379 7.41750 8.10110 8.39047 9.26652 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006943 B = 0.005727 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4032.109058 B = 4888.240320 C = 7977.284462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.123 3.877 3 H 0.107 0.893 4 N -1.101 6.101 5 S 2.600 3.400 6 C -0.638 4.638 7 O -1.012 7.012 8 O -1.001 7.001 9 C 0.515 3.485 10 O -0.564 6.564 11 N -0.696 5.696 12 C 0.185 3.815 13 C 0.138 3.862 14 N -0.725 5.725 15 C -0.242 4.242 16 H 0.057 0.943 17 C -0.066 4.066 18 N -0.957 5.957 19 Si 0.960 3.040 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.297 1.297 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.113 4.113 26 C -0.105 4.105 27 C -0.121 4.121 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.422 0.578 32 H 0.155 0.845 33 H 0.151 0.849 34 H 0.165 0.835 35 H 0.409 0.591 36 H 0.017 0.983 37 H 0.013 0.987 38 H 0.379 0.621 39 H 0.251 0.749 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.101 -6.370 3.967 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.011 3.989 3 H 0.125 0.875 4 N -0.860 5.860 5 S 2.698 3.302 6 C -0.794 4.794 7 O -1.002 7.002 8 O -0.991 6.991 9 C 0.300 3.700 10 O -0.443 6.443 11 N -0.349 5.349 12 C 0.099 3.901 13 C 0.010 3.990 14 N -0.369 5.369 15 C -0.374 4.374 16 H 0.075 0.925 17 C -0.259 4.259 18 N -0.608 5.608 19 Si 0.790 3.210 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.224 1.224 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.150 4.150 26 C -0.142 4.142 27 C -0.160 4.160 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.258 0.742 32 H 0.174 0.826 33 H 0.169 0.831 34 H 0.183 0.817 35 H 0.246 0.754 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.212 0.788 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.517 -6.856 4.404 23.008 hybrid contribution 1.062 0.580 0.062 1.212 sum -20.455 -6.276 4.466 21.857 Atomic orbital electron populations 1.22465 0.89008 1.05157 1.05921 1.20878 0.98026 0.96580 0.83394 0.87507 1.55201 1.84417 1.20353 1.26050 1.04883 0.78720 0.73696 0.72911 1.30362 1.19324 1.15276 1.14414 1.93626 1.64762 1.61907 1.79878 1.93548 1.81730 1.60315 1.63556 1.20832 0.79464 0.84233 0.85481 1.90608 1.38738 1.28053 1.86895 1.45759 1.47593 1.36968 1.04559 1.20402 0.90490 0.94071 0.85152 1.21180 0.94070 0.86696 0.97005 1.42230 1.05203 1.03290 1.86160 1.19488 0.86397 0.92130 1.39411 0.92470 1.25340 1.01199 0.95705 1.03663 1.69740 1.33627 0.99049 1.58343 0.85270 0.81166 0.77643 0.76921 1.20103 1.21017 1.22440 1.21714 0.97944 0.99787 0.95765 1.21534 0.92841 0.97638 1.02884 1.21528 1.01268 0.94669 0.97563 1.21412 0.93200 1.00663 0.98952 1.21818 0.97913 0.94260 1.02021 0.90160 0.88162 0.88700 0.74192 0.82634 0.83083 0.81711 0.75422 0.96453 0.96948 0.78755 0.94016 0.92785 0.90954 0.90569 0.90880 0.92122 0.90069 0.91400 0.91599 0.91511 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 9.37 71.98 0.67 -1.24 16 2 C 0.12 2.97 3.23 44.25 0.14 3.11 16 3 H 0.11 2.88 7.48 -2.39 -0.02 2.87 16 4 N -1.10 -27.64 5.15 -172.53 -0.89 -28.53 16 5 S 2.60 65.41 6.08 -56.49 -0.34 65.07 16 6 C -0.64 -6.01 10.04 113.37 1.14 -4.87 16 7 O -1.01 -38.41 17.39 -127.65 -2.22 -40.63 16 8 O -1.00 -31.95 18.08 -127.65 -2.31 -34.25 16 9 C 0.51 16.56 6.63 87.66 0.58 17.14 16 10 O -0.56 -22.72 12.29 -3.02 -0.04 -22.76 16 11 N -0.70 -19.71 3.50 -422.92 -1.48 -21.20 16 12 C 0.19 5.80 0.32 3.61 0.00 5.80 16 13 C 0.14 6.11 4.79 86.38 0.41 6.53 16 14 N -0.73 -38.19 5.18 -343.45 -1.78 -39.97 16 15 C -0.24 -14.60 9.99 84.03 0.84 -13.76 16 16 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 17 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 18 N -0.96 -59.41 13.06 21.65 0.28 -59.13 16 19 Si 0.96 49.78 29.55 68.60 2.03 51.80 16 20 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 21 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 22 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 23 C -0.11 -3.08 4.67 30.60 0.14 -2.94 16 24 C -0.11 -1.99 5.75 30.59 0.18 -1.81 16 25 C -0.11 -1.77 5.92 30.60 0.18 -1.59 16 26 C -0.10 -1.97 5.77 30.60 0.18 -1.80 16 27 C -0.12 -3.28 4.58 30.59 0.14 -3.14 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 0.52 5.78 -2.39 -0.01 0.50 16 30 H 0.09 0.77 7.45 -2.39 -0.02 0.75 16 31 H 0.42 10.85 8.17 -96.74 -0.79 10.05 16 32 H 0.16 0.86 6.77 -2.39 -0.02 0.84 16 33 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.16 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.41 9.10 6.47 -92.71 -0.60 8.50 16 36 H 0.02 0.88 6.26 -2.39 -0.01 0.87 16 37 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.38 20.07 6.46 -92.70 -0.60 19.47 16 39 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.05 1.75 7.11 -2.39 -0.02 1.73 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.11 6.79 -2.39 -0.02 1.09 16 44 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.07 1.18 7.60 -2.39 -0.02 1.16 16 48 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.06 1.89 6.28 -2.39 -0.01 1.87 16 Total: -1.00 -92.24 388.35 -2.68 -94.92 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -1.00 Total: 36.76 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 5.07 Total: -2.11 kcal Atomic # 7 Polarization: -144.95 SS G_CDS: -3.87 Total: -148.81 kcal Atomic # 8 Polarization: -93.07 SS G_CDS: -4.56 Total: -97.64 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.03 Total: 51.80 kcal Atomic # 16 Polarization: 65.41 SS G_CDS: -0.34 Total: 65.07 kcal Total: -92.24 -2.68 -94.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570803502.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.502 kcal (2) G-P(sol) polarization free energy of solvation -92.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds