Wall clock time and date at job start Wed Apr 1 2020 05:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47297 * 2 1 4 4 N 1.46500 * 109.47046 * 240.00213 * 2 1 3 5 5 C 1.36938 * 120.00117 * 84.99780 * 4 2 1 6 6 H 1.07990 * 120.00277 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99967 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99735 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00315 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47296 * 89.99831 * 9 7 5 11 11 H 1.48502 * 109.47336 * 210.00514 * 9 7 5 12 12 H 1.48506 * 109.46704 * 330.00394 * 9 7 5 13 13 C 1.52995 * 109.47291 * 119.99829 * 2 1 3 14 14 H 1.08994 * 109.70275 * 307.28462 * 13 2 1 15 15 C 1.53629 * 109.66260 * 67.87335 * 13 2 1 16 16 C 1.53043 * 109.24060 * 174.55160 * 15 13 2 17 17 C 1.53032 * 109.53750 * 298.50660 * 16 15 13 18 18 C 1.53188 * 109.31409 * 61.36788 * 17 16 15 19 19 N 1.46927 * 108.77591 * 305.36422 * 18 17 16 20 20 C 1.34778 * 120.63487 * 233.58199 * 19 18 17 21 21 O 1.21282 * 120.00314 * 174.32975 * 20 19 18 22 22 C 1.50700 * 119.99430 * 354.61021 * 20 19 18 23 23 N 1.46507 * 109.46924 * 179.72375 * 22 20 19 24 24 C 1.46498 * 119.99921 * 84.99706 * 23 22 20 25 25 S 1.65597 * 119.99946 * 264.99969 * 23 22 20 26 26 C 1.81401 * 104.45172 * 89.99596 * 25 23 22 27 27 O 1.42092 * 104.27745 * 206.07198 * 25 23 22 28 28 O 1.42106 * 104.27728 * 333.92857 * 25 23 22 29 29 H 1.09001 * 109.46957 * 304.96339 * 1 2 3 30 30 H 1.09007 * 109.47139 * 64.95560 * 1 2 3 31 31 H 1.08998 * 109.47588 * 184.95725 * 1 2 3 32 32 H 0.97005 * 119.99847 * 265.00285 * 4 2 1 33 33 H 0.97000 * 119.99997 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.63474 * 54.55677 * 15 13 2 35 35 H 1.09005 * 109.43132 * 294.41802 * 15 13 2 36 36 H 1.09004 * 109.45219 * 178.49079 * 16 15 13 37 37 H 1.08996 * 109.46100 * 58.53341 * 16 15 13 38 38 H 1.09006 * 109.49990 * 301.42004 * 17 16 15 39 39 H 1.08995 * 109.50174 * 181.31879 * 17 16 15 40 40 H 1.09003 * 109.59119 * 185.57818 * 18 17 16 41 41 H 1.09002 * 109.58877 * 65.15113 * 18 17 16 42 42 H 1.09003 * 109.47255 * 299.71788 * 22 20 19 43 43 H 1.08996 * 109.47304 * 59.72266 * 22 20 19 44 44 H 1.08998 * 109.46956 * 90.00361 * 24 23 22 45 45 H 1.09003 * 109.46919 * 209.99869 * 24 23 22 46 46 H 1.09001 * 109.47394 * 330.00043 * 24 23 22 47 47 H 1.09002 * 109.47019 * 60.00287 * 26 25 23 48 48 H 1.09003 * 109.47305 * 179.97438 * 26 25 23 49 49 H 1.09000 * 109.47295 * 300.00607 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8926 1.0405 -2.4242 7 6 2.6122 -0.6617 -3.5091 8 7 2.9253 -1.9388 -3.4499 9 14 2.7913 0.2703 -5.1180 10 1 4.1535 0.8554 -5.2022 11 1 2.5813 -0.6610 -6.2555 12 1 1.7812 1.3574 -5.1753 13 6 2.0400 -0.7212 1.2492 14 1 1.5764 -0.2909 2.1369 15 6 1.6986 -2.2163 1.1586 16 6 2.3297 -2.9505 2.3438 17 6 3.8516 -2.8002 2.2873 18 6 4.2182 -1.3161 2.3872 19 7 3.4998 -0.5799 1.3381 20 6 4.1664 0.2144 0.4772 21 8 3.5784 0.7354 -0.4468 22 6 5.6437 0.4500 0.6591 23 7 6.1310 1.3364 -0.4008 24 6 6.0230 2.7894 -0.2478 25 16 6.8037 0.6958 -1.7717 26 6 5.4041 0.4830 -2.9059 27 8 7.6765 1.7136 -2.2422 28 8 7.3067 -0.5672 -1.3580 29 1 -0.3633 0.5889 0.8422 30 1 -0.3634 0.4351 -0.9311 31 1 -0.3634 -1.0238 0.0888 32 1 2.2489 -1.6318 -1.1527 33 1 3.2486 -2.3961 -4.2419 34 1 2.0896 -2.6255 0.2270 35 1 0.6163 -2.3435 1.1863 36 1 2.0673 -4.0075 2.2975 37 1 1.9570 -2.5244 3.2752 38 1 4.2224 -3.2038 1.3451 39 1 4.3019 -3.3428 3.1184 40 1 5.2925 -1.1949 2.2483 41 1 3.9287 -0.9333 3.3659 42 1 5.8210 0.9130 1.6299 43 1 6.1724 -0.5018 0.6084 44 1 6.9227 3.1717 0.2344 45 1 5.9127 3.2508 -1.2292 46 1 5.1534 3.0266 0.3651 47 1 4.9390 1.4506 -3.0947 48 1 5.7592 0.0613 -3.8462 49 1 4.6729 -0.1903 -2.4584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660441222.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:46 Heat of formation + Delta-G solvation = -38.859671 kcal Electronic energy + Delta-G solvation = -32938.478987 eV Core-core repulsion = 28837.557982 eV Total energy + Delta-G solvation = -4100.921005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.22268 -37.31045 -36.71547 -35.77748 -35.48891 -34.83894 -32.51388 -32.33008 -29.73693 -28.56819 -28.48096 -28.08706 -25.44335 -24.26729 -23.92600 -23.04533 -20.80709 -20.07720 -18.74804 -18.28918 -17.38926 -17.05180 -16.58327 -16.09960 -15.65128 -15.32061 -14.89182 -14.58245 -14.30369 -14.19000 -13.98018 -13.73084 -13.52571 -13.28766 -12.90371 -12.76562 -12.58666 -12.40264 -12.30485 -12.24195 -12.10706 -11.97196 -11.76487 -11.66603 -11.40334 -11.32203 -11.22163 -11.11824 -11.02265 -10.77809 -10.67866 -10.59154 -10.37385 -10.15766 -10.07198 -9.82477 -9.44861 -9.10093 -8.72300 -8.15359 -7.89737 -6.67566 -5.60912 -2.81848 0.77929 2.87058 3.24935 3.43676 3.46490 3.52746 3.55023 4.28081 4.61087 4.69198 4.80670 4.82881 4.95075 5.05888 5.16275 5.34960 5.40661 5.47641 5.50204 5.55011 5.65669 5.67229 5.71601 5.73882 5.76924 5.87171 5.91486 5.98305 6.01652 6.06303 6.12208 6.14719 6.26385 6.29714 6.41517 6.47037 6.57636 6.66629 6.85444 6.97282 7.01259 7.09325 7.36292 7.89406 7.94431 8.57446 8.89869 9.68712 10.27338 10.64830 11.62005 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009281 B = 0.007041 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.161326 B = 3975.912002 C = 5751.703007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.171 3.829 3 H 0.084 0.916 4 N -0.703 5.703 5 C -0.171 4.171 6 H 0.065 0.935 7 C -0.025 4.025 8 N -0.944 5.944 9 Si 0.877 3.123 10 H -0.285 1.285 11 H -0.298 1.298 12 H -0.287 1.287 13 C 0.147 3.853 14 H 0.061 0.939 15 C -0.134 4.134 16 C -0.116 4.116 17 C -0.137 4.137 18 C 0.110 3.890 19 N -0.610 5.610 20 C 0.467 3.533 21 O -0.445 6.445 22 C 0.099 3.901 23 N -0.982 5.982 24 C 0.106 3.894 25 S 2.596 3.404 26 C -0.646 4.646 27 O -0.976 6.976 28 O -0.969 6.969 29 H 0.031 0.969 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.379 0.621 33 H 0.250 0.750 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.122 0.878 48 H 0.111 0.889 49 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.589 2.905 14.716 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.061 3.939 3 H 0.101 0.899 4 N -0.345 5.345 5 C -0.304 4.304 6 H 0.083 0.917 7 C -0.218 4.218 8 N -0.596 5.596 9 Si 0.710 3.290 10 H -0.213 1.213 11 H -0.225 1.225 12 H -0.214 1.214 13 C 0.043 3.957 14 H 0.079 0.921 15 C -0.172 4.172 16 C -0.154 4.154 17 C -0.175 4.175 18 C -0.013 4.013 19 N -0.348 5.348 20 C 0.251 3.749 21 O -0.315 6.315 22 C -0.031 4.031 23 N -0.818 5.818 24 C -0.040 4.040 25 S 2.692 3.308 26 C -0.799 4.799 27 O -0.966 6.966 28 O -0.959 6.959 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.215 0.785 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.131 0.869 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.140 0.860 48 H 0.130 0.870 49 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.239 3.205 13.926 14.653 hybrid contribution -0.618 0.018 -1.092 1.255 sum 2.621 3.223 12.834 13.490 Atomic orbital electron populations 1.22600 1.00327 1.00139 1.00095 1.20700 0.90016 0.97853 0.85364 0.89900 1.42459 1.77223 1.09746 1.05105 1.19070 1.31762 0.93201 0.86377 0.91734 1.24493 1.04477 0.95888 0.96982 1.69635 1.53479 1.08249 1.28237 0.86738 0.78026 0.78873 0.85356 1.21274 1.22482 1.21360 1.21671 0.79162 0.95667 0.99222 0.92098 1.22073 1.00544 0.95388 0.99215 1.21490 0.95087 1.00288 0.98498 1.21917 0.96831 0.96031 1.02726 1.21633 0.96760 0.91967 0.90975 1.47917 1.07212 1.46835 1.32794 1.21157 0.89661 0.81227 0.82895 1.90994 1.66555 1.46969 1.26973 1.21286 0.93297 0.96238 0.92266 1.57055 1.77762 1.13309 1.33653 1.21331 1.01380 0.78491 1.02790 1.05363 0.76779 0.73589 0.75040 1.30675 1.20395 1.13482 1.15303 1.93534 1.63201 1.58804 1.81070 1.93533 1.78649 1.43154 1.80565 0.95033 0.92632 0.93883 0.78520 0.94019 0.90041 0.91313 0.92202 0.92526 0.90938 0.91411 0.90259 0.92058 0.88242 0.86850 0.92944 0.91228 0.91184 0.85963 0.87008 0.80098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.39 37.16 0.35 -2.59 16 2 C 0.17 3.13 1.88 -67.93 -0.13 3.00 16 3 H 0.08 1.66 5.86 -52.33 -0.31 1.36 16 4 N -0.70 -15.77 3.67 -53.43 -0.20 -15.97 16 5 C -0.17 -4.35 7.15 -15.06 -0.11 -4.45 16 6 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 7 C -0.03 -0.67 3.46 -17.43 -0.06 -0.73 16 8 N -0.94 -26.73 13.03 55.49 0.72 -26.01 16 9 Si 0.88 21.78 27.78 -169.99 -4.72 17.05 16 10 H -0.29 -6.75 6.06 56.52 0.34 -6.41 16 11 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 C 0.15 2.17 2.73 -67.37 -0.18 1.99 16 14 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.13 -1.92 4.90 -26.38 -0.13 -2.05 16 16 C -0.12 -1.31 5.88 -26.69 -0.16 -1.47 16 17 C -0.14 -1.49 6.08 -26.62 -0.16 -1.65 16 18 C 0.11 1.17 6.32 -3.71 -0.02 1.15 16 19 N -0.61 -8.57 2.96 -164.96 -0.49 -9.06 16 20 C 0.47 7.47 7.47 -10.98 -0.08 7.38 16 21 O -0.45 -8.54 7.81 5.56 0.04 -8.49 16 22 C 0.10 1.34 4.53 -5.19 -0.02 1.32 16 23 N -0.98 -14.75 2.61 -123.05 -0.32 -15.08 16 24 C 0.11 1.33 10.20 59.85 0.61 1.94 16 25 S 2.60 46.61 6.02 -107.50 -0.65 45.96 16 26 C -0.65 -12.99 7.86 101.05 0.79 -12.20 16 27 O -0.98 -18.92 17.09 -57.54 -0.98 -19.90 16 28 O -0.97 -19.41 16.53 -57.54 -0.95 -20.36 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 31 H 0.04 0.72 6.60 -51.93 -0.34 0.38 16 32 H 0.38 9.20 5.55 -40.82 -0.23 8.98 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.08 1.46 6.01 -51.93 -0.31 1.15 16 35 H 0.07 0.96 6.84 -51.93 -0.36 0.61 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.74 5.96 -51.93 -0.31 0.43 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 43 H 0.11 1.58 6.12 -51.93 -0.32 1.26 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.89 7.79 -51.93 -0.40 0.48 16 46 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 47 H 0.12 2.37 7.79 -51.92 -0.40 1.97 16 48 H 0.11 2.21 7.75 -51.92 -0.40 1.81 16 49 H 0.18 4.18 4.50 -51.92 -0.23 3.95 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -32.20 372.00 -9.11 -41.31 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -7.86 Total: 13.30 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 0.70 Total: -8.36 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -0.28 Total: -66.11 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -1.89 Total: -48.76 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.05 kcal Atomic # 16 Polarization: 46.61 SS G_CDS: -0.65 Total: 45.96 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.20 -9.11 -41.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660441222.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.449 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds