Wall clock time and date at job start Wed Apr 1 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47297 * 2 1 4 4 N 1.46500 * 109.47046 * 240.00213 * 2 1 3 5 5 C 1.36938 * 120.00117 * 84.99780 * 4 2 1 6 6 H 1.07990 * 120.00277 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99967 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99735 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00315 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47296 * 89.99831 * 9 7 5 11 11 H 1.48502 * 109.47336 * 210.00514 * 9 7 5 12 12 H 1.48506 * 109.46704 * 330.00394 * 9 7 5 13 13 C 1.52995 * 109.47291 * 119.99829 * 2 1 3 14 14 H 1.08994 * 109.70275 * 307.28462 * 13 2 1 15 15 C 1.53629 * 109.66260 * 67.87335 * 13 2 1 16 16 C 1.53043 * 109.24060 * 174.55160 * 15 13 2 17 17 C 1.53032 * 109.53750 * 298.50660 * 16 15 13 18 18 C 1.53188 * 109.31409 * 61.36788 * 17 16 15 19 19 N 1.46927 * 108.77591 * 305.36422 * 18 17 16 20 20 C 1.34778 * 120.63487 * 233.58199 * 19 18 17 21 21 O 1.21282 * 120.00314 * 174.32975 * 20 19 18 22 22 C 1.50700 * 119.99430 * 354.61021 * 20 19 18 23 23 N 1.46507 * 109.46924 * 179.72375 * 22 20 19 24 24 C 1.46498 * 119.99921 * 84.99706 * 23 22 20 25 25 S 1.65597 * 119.99946 * 264.99969 * 23 22 20 26 26 C 1.81401 * 104.45172 * 89.99596 * 25 23 22 27 27 O 1.42092 * 104.27745 * 206.07198 * 25 23 22 28 28 O 1.42106 * 104.27728 * 333.92857 * 25 23 22 29 29 H 1.09001 * 109.46957 * 304.96339 * 1 2 3 30 30 H 1.09007 * 109.47139 * 64.95560 * 1 2 3 31 31 H 1.08998 * 109.47588 * 184.95725 * 1 2 3 32 32 H 0.97005 * 119.99847 * 265.00285 * 4 2 1 33 33 H 0.97000 * 119.99997 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.63474 * 54.55677 * 15 13 2 35 35 H 1.09005 * 109.43132 * 294.41802 * 15 13 2 36 36 H 1.09004 * 109.45219 * 178.49079 * 16 15 13 37 37 H 1.08996 * 109.46100 * 58.53341 * 16 15 13 38 38 H 1.09006 * 109.49990 * 301.42004 * 17 16 15 39 39 H 1.08995 * 109.50174 * 181.31879 * 17 16 15 40 40 H 1.09003 * 109.59119 * 185.57818 * 18 17 16 41 41 H 1.09002 * 109.58877 * 65.15113 * 18 17 16 42 42 H 1.09003 * 109.47255 * 299.71788 * 22 20 19 43 43 H 1.08996 * 109.47304 * 59.72266 * 22 20 19 44 44 H 1.08998 * 109.46956 * 90.00361 * 24 23 22 45 45 H 1.09003 * 109.46919 * 209.99869 * 24 23 22 46 46 H 1.09001 * 109.47394 * 330.00043 * 24 23 22 47 47 H 1.09002 * 109.47019 * 60.00287 * 26 25 23 48 48 H 1.09003 * 109.47305 * 179.97438 * 26 25 23 49 49 H 1.09000 * 109.47295 * 300.00607 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8926 1.0405 -2.4242 7 6 2.6122 -0.6617 -3.5091 8 7 2.9253 -1.9388 -3.4499 9 14 2.7913 0.2703 -5.1180 10 1 4.1535 0.8554 -5.2022 11 1 2.5813 -0.6610 -6.2555 12 1 1.7812 1.3574 -5.1753 13 6 2.0400 -0.7212 1.2492 14 1 1.5764 -0.2909 2.1369 15 6 1.6986 -2.2163 1.1586 16 6 2.3297 -2.9505 2.3438 17 6 3.8516 -2.8002 2.2873 18 6 4.2182 -1.3161 2.3872 19 7 3.4998 -0.5799 1.3381 20 6 4.1664 0.2144 0.4772 21 8 3.5784 0.7354 -0.4468 22 6 5.6437 0.4500 0.6591 23 7 6.1310 1.3364 -0.4008 24 6 6.0230 2.7894 -0.2478 25 16 6.8037 0.6958 -1.7717 26 6 5.4041 0.4830 -2.9059 27 8 7.6765 1.7136 -2.2422 28 8 7.3067 -0.5672 -1.3580 29 1 -0.3633 0.5889 0.8422 30 1 -0.3634 0.4351 -0.9311 31 1 -0.3634 -1.0238 0.0888 32 1 2.2489 -1.6318 -1.1527 33 1 3.2486 -2.3961 -4.2419 34 1 2.0896 -2.6255 0.2270 35 1 0.6163 -2.3435 1.1863 36 1 2.0673 -4.0075 2.2975 37 1 1.9570 -2.5244 3.2752 38 1 4.2224 -3.2038 1.3451 39 1 4.3019 -3.3428 3.1184 40 1 5.2925 -1.1949 2.2483 41 1 3.9287 -0.9333 3.3659 42 1 5.8210 0.9130 1.6299 43 1 6.1724 -0.5018 0.6084 44 1 6.9227 3.1717 0.2344 45 1 5.9127 3.2508 -1.2292 46 1 5.1534 3.0266 0.3651 47 1 4.9390 1.4506 -3.0947 48 1 5.7592 0.0613 -3.8462 49 1 4.6729 -0.1903 -2.4584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660441222.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:45 Heat of formation + Delta-G solvation = -62.804034 kcal Electronic energy + Delta-G solvation = -32939.517293 eV Core-core repulsion = 28837.557982 eV Total energy + Delta-G solvation = -4101.959311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.40863 -38.50089 -38.22201 -37.16639 -36.95370 -36.21353 -34.10480 -33.56980 -31.19253 -30.10694 -29.71517 -29.49779 -26.57700 -25.71135 -25.26255 -24.40593 -21.87807 -21.41879 -20.07533 -19.54132 -18.92087 -18.72158 -17.79061 -17.39406 -17.13481 -16.63183 -16.24331 -16.05983 -15.61121 -15.52313 -15.41199 -14.92747 -14.82617 -14.43258 -14.18271 -14.04038 -13.98634 -13.86976 -13.70159 -13.57541 -13.50488 -13.32916 -13.22050 -13.12503 -12.97968 -12.87091 -12.58057 -12.55876 -12.38091 -12.24298 -12.12078 -11.84041 -11.72302 -11.63831 -11.45308 -11.26910 -11.15149 -10.63583 -10.34513 -9.37370 -9.15339 -8.52325 -7.69115 -4.84981 -0.67707 1.41977 1.47479 1.49011 1.57832 2.06303 2.36610 2.69420 2.80415 3.19146 3.64930 3.71255 3.73939 4.03730 4.07211 4.12983 4.16346 4.24392 4.33023 4.39057 4.43354 4.45761 4.49660 4.53481 4.72965 4.78546 4.81649 4.92831 4.96436 4.98830 5.02817 5.04657 5.10560 5.18993 5.22522 5.33115 5.39874 5.42003 5.53315 5.55121 5.64500 5.69318 5.78347 6.06875 6.53416 6.82659 7.59600 7.73365 8.41054 8.66345 9.55014 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009281 B = 0.007041 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.161326 B = 3975.912002 C = 5751.703007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.166 3.834 3 H 0.071 0.929 4 N -0.704 5.704 5 C -0.141 4.141 6 H 0.054 0.946 7 C -0.067 4.067 8 N -0.973 5.973 9 Si 0.905 3.095 10 H -0.273 1.273 11 H -0.315 1.315 12 H -0.288 1.288 13 C 0.152 3.848 14 H 0.092 0.908 15 C -0.129 4.129 16 C -0.110 4.110 17 C -0.136 4.136 18 C 0.104 3.896 19 N -0.610 5.610 20 C 0.458 3.542 21 O -0.489 6.489 22 C 0.099 3.901 23 N -0.978 5.978 24 C 0.098 3.902 25 S 2.629 3.371 26 C -0.657 4.657 27 O -0.986 6.986 28 O -0.988 6.988 29 H 0.063 0.937 30 H 0.026 0.974 31 H 0.043 0.957 32 H 0.369 0.631 33 H 0.238 0.762 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.148 0.852 43 H 0.112 0.888 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.121 0.879 48 H 0.104 0.896 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 3.894 18.672 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.088 0.912 4 N -0.345 5.345 5 C -0.274 4.274 6 H 0.072 0.928 7 C -0.257 4.257 8 N -0.629 5.629 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.243 1.243 12 H -0.214 1.214 13 C 0.048 3.952 14 H 0.110 0.890 15 C -0.168 4.168 16 C -0.147 4.147 17 C -0.174 4.174 18 C -0.018 4.018 19 N -0.346 5.346 20 C 0.243 3.757 21 O -0.362 6.362 22 C -0.030 4.030 23 N -0.815 5.815 24 C -0.047 4.047 25 S 2.723 3.277 26 C -0.808 4.808 27 O -0.977 6.977 28 O -0.979 6.979 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.203 0.797 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.165 0.835 43 H 0.129 0.871 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.104 0.896 47 H 0.140 0.860 48 H 0.123 0.877 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.695 4.215 17.928 18.783 hybrid contribution -0.819 -0.229 -2.174 2.334 sum 2.876 3.986 15.754 16.503 Atomic orbital electron populations 1.22461 0.99312 1.00538 0.99975 1.20819 0.90518 0.97359 0.85549 0.91173 1.42553 1.76984 1.09229 1.05700 1.19075 1.28678 0.92423 0.87252 0.92839 1.24724 1.06249 0.96191 0.98544 1.69745 1.56091 1.09348 1.27759 0.86247 0.78633 0.77863 0.83344 1.19964 1.24328 1.21415 1.21559 0.80066 0.95409 0.98163 0.89023 1.21987 1.00701 0.95398 0.98688 1.21462 0.95199 1.00155 0.97901 1.21922 0.96571 0.96691 1.02228 1.21962 0.97396 0.91175 0.91238 1.48027 1.07002 1.46404 1.33178 1.21647 0.90656 0.80899 0.82508 1.90971 1.67591 1.48914 1.28680 1.21514 0.91369 0.96463 0.93688 1.56864 1.77465 1.14662 1.32517 1.21585 1.03306 0.76698 1.03067 1.04208 0.75759 0.72868 0.74869 1.30693 1.21449 1.12676 1.16011 1.93512 1.63360 1.59003 1.81799 1.93501 1.78923 1.44572 1.80858 0.91766 0.95480 0.93785 0.79679 0.95305 0.94473 0.91162 0.92007 0.89800 0.94302 0.88343 0.88781 0.88574 0.83467 0.87062 0.90541 0.91944 0.89638 0.85999 0.87735 0.82649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 9.39 71.98 0.68 -4.74 16 2 C 0.17 5.99 1.88 44.99 0.08 6.07 16 3 H 0.07 2.78 5.86 -8.77 -0.05 2.73 16 4 N -0.70 -32.37 3.67 -322.95 -1.18 -33.55 16 5 C -0.14 -7.36 7.15 84.03 0.60 -6.76 16 6 H 0.05 2.89 7.83 -2.92 -0.02 2.87 16 7 C -0.07 -3.72 3.46 84.86 0.29 -3.42 16 8 N -0.97 -57.76 13.03 21.65 0.28 -57.48 16 9 Si 0.91 46.07 27.78 68.60 1.91 47.98 16 10 H -0.27 -13.10 6.06 99.48 0.60 -12.50 16 11 H -0.31 -16.81 7.11 99.48 0.71 -16.10 16 12 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 13 C 0.15 4.15 2.73 45.12 0.12 4.27 16 14 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 15 C -0.13 -3.54 4.90 30.82 0.15 -3.39 16 16 C -0.11 -2.15 5.88 30.62 0.18 -1.97 16 17 C -0.14 -2.55 6.08 30.67 0.19 -2.36 16 18 C 0.10 1.77 6.32 86.36 0.55 2.32 16 19 N -0.61 -15.53 2.96 -794.21 -2.35 -17.88 16 20 C 0.46 13.85 7.47 87.66 0.65 14.51 16 21 O -0.49 -18.57 7.81 -3.04 -0.02 -18.59 16 22 C 0.10 2.40 4.53 85.63 0.39 2.79 16 23 N -0.98 -27.47 2.61 -543.21 -1.42 -28.89 16 24 C 0.10 2.21 10.20 127.77 1.30 3.51 16 25 S 2.63 93.26 6.02 -56.49 -0.34 92.92 16 26 C -0.66 -27.27 7.86 113.37 0.89 -26.38 16 27 O -0.99 -37.33 17.09 -127.65 -2.18 -39.51 16 28 O -0.99 -39.23 16.53 -127.65 -2.11 -41.34 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.04 1.44 6.60 -2.39 -0.02 1.42 16 32 H 0.37 18.62 5.55 -92.70 -0.51 18.10 16 33 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 34 H 0.04 1.36 6.01 -2.39 -0.01 1.35 16 35 H 0.07 1.87 6.84 -2.38 -0.02 1.85 16 36 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 38 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.09 1.34 5.96 -2.39 -0.01 1.33 16 41 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.15 2.19 8.09 -2.39 -0.02 2.18 16 43 H 0.11 2.83 6.12 -2.39 -0.01 2.81 16 44 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.06 1.50 7.79 -2.39 -0.02 1.48 16 46 H 0.08 1.68 8.07 -2.39 -0.02 1.66 16 47 H 0.12 4.89 7.79 -2.39 -0.02 4.87 16 48 H 0.10 4.34 7.75 -2.39 -0.02 4.32 16 49 H 0.16 7.47 4.50 -2.39 -0.01 7.46 16 Total: -1.00 -73.54 372.00 -1.04 -74.58 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: 0.30 Total: 37.31 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 6.08 Total: -15.55 kcal Atomic # 7 Polarization: -133.12 SS G_CDS: -4.67 Total: -137.79 kcal Atomic # 8 Polarization: -95.13 SS G_CDS: -4.32 Total: -99.45 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.91 Total: 47.98 kcal Atomic # 16 Polarization: 93.26 SS G_CDS: -0.34 Total: 92.92 kcal Total: -73.54 -1.04 -74.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660441222.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.780 kcal (2) G-P(sol) polarization free energy of solvation -73.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds