Wall clock time and date at job start Wed Apr 1 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47253 * 2 1 4 4 N 1.46505 * 109.46936 * 240.00050 * 2 1 3 5 5 S 1.65596 * 119.99714 * 95.00260 * 4 2 1 6 6 C 1.81399 * 104.44905 * 64.99956 * 5 4 2 7 7 O 1.42110 * 104.27500 * 181.06722 * 5 4 2 8 8 O 1.42095 * 104.27942 * 308.92357 * 5 4 2 9 9 C 1.50697 * 109.46799 * 120.00008 * 2 1 3 10 10 O 1.21287 * 119.99531 * 120.00089 * 9 2 1 11 11 N 1.34770 * 120.00313 * 299.99881 * 9 2 1 12 12 C 1.46504 * 119.99978 * 179.97438 * 11 9 2 13 13 C 1.53005 * 109.46979 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47040 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46895 * 174.93436 * 14 13 12 16 16 H 1.09007 * 109.87324 * 306.13617 * 15 14 13 17 17 C 1.54321 * 110.01252 * 67.23881 * 15 14 13 18 18 C 1.55149 * 102.94179 * 141.68277 * 17 15 14 19 19 C 1.54908 * 101.58153 * 324.49640 * 18 17 15 20 20 N 1.47023 * 109.87930 * 185.12435 * 15 14 13 21 21 C 1.36931 * 125.65028 * 61.45423 * 20 15 14 22 22 H 1.08002 * 120.00168 * 14.67814 * 21 20 15 23 23 C 1.38815 * 119.99820 * 194.68515 * 21 20 15 24 24 N 1.31619 * 120.00482 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99755 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47237 * 59.99677 * 25 23 21 27 27 H 1.48507 * 109.46906 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47454 * 299.99494 * 25 23 21 29 29 H 1.09004 * 109.47222 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47283 * 300.00226 * 1 2 3 31 31 H 1.09006 * 109.47117 * 60.00101 * 1 2 3 32 32 H 0.96993 * 119.99593 * 275.00039 * 4 2 1 33 33 H 1.08998 * 109.47518 * 59.99945 * 6 5 4 34 34 H 1.09002 * 109.46965 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47330 * 299.99118 * 6 5 4 36 36 H 0.96998 * 120.00251 * 0.02562 * 11 9 2 37 37 H 1.08998 * 109.46704 * 60.00456 * 12 11 9 38 38 H 1.08991 * 109.47259 * 300.00065 * 12 11 9 39 39 H 1.08996 * 109.47046 * 60.00171 * 13 12 11 40 40 H 1.09001 * 109.47140 * 300.00302 * 13 12 11 41 41 H 1.09003 * 109.46886 * 54.93221 * 14 13 12 42 42 H 1.08996 * 109.46795 * 294.93480 * 14 13 12 43 43 H 1.08995 * 110.72025 * 23.31644 * 17 15 14 44 44 H 1.09007 * 110.71831 * 260.04719 * 17 15 14 45 45 H 1.09007 * 111.00405 * 206.42347 * 18 17 15 46 46 H 1.08997 * 111.01050 * 82.57372 * 18 17 15 47 47 H 1.09003 * 110.36843 * 155.85490 * 19 18 17 48 48 H 1.09001 * 110.36413 * 278.06156 * 19 18 17 49 49 H 0.96995 * 120.00670 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4121 0.1772 -2.5505 6 6 3.8313 1.1872 -2.0440 7 8 2.8123 -0.8076 -3.4937 8 8 1.2751 0.9966 -2.7846 9 6 2.0322 -0.7104 1.2305 10 8 2.7295 -1.6965 1.1191 11 7 1.7067 -0.2500 2.4545 12 6 2.1945 -0.9410 3.6507 13 6 1.6851 -0.2193 4.9000 14 6 2.1951 -0.9406 6.1492 15 6 1.7924 -0.1492 7.3951 16 1 2.1329 0.8824 7.3049 17 6 0.2595 -0.1826 7.5694 18 6 0.0871 -0.3051 9.1065 19 6 1.2916 -1.2032 9.4839 20 7 2.3815 -0.7673 8.5921 21 6 3.7205 -0.9143 8.8375 22 1 4.4407 -0.3626 8.2515 23 6 4.1524 -1.7725 9.8394 24 7 3.2748 -2.4446 10.5538 25 14 5.9792 -1.9736 10.1737 26 1 6.5609 -0.6604 10.5508 27 1 6.1757 -2.9390 11.2849 28 1 6.6532 -2.4811 8.9516 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.1109 -1.6561 -1.1949 33 1 4.6459 0.5362 -1.7267 34 1 4.1611 1.7979 -2.8845 35 1 3.5400 1.8343 -1.2166 36 1 1.1487 0.5384 2.5436 37 1 3.2845 -0.9414 3.6508 38 1 1.8308 -1.9685 3.6505 39 1 0.5952 -0.2185 4.9000 40 1 2.0493 0.8081 4.8999 41 1 3.2813 -1.0204 6.1047 42 1 1.7592 -1.9385 6.1960 43 1 -0.1674 -1.0484 7.0633 44 1 -0.1905 0.7402 7.2032 45 1 -0.8561 -0.7911 9.3564 46 1 0.1614 0.6704 9.5870 47 1 1.5691 -1.0473 10.5264 48 1 1.0523 -2.2520 9.3086 49 1 3.5765 -3.0441 11.2542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663108753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:46 Heat of formation + Delta-G solvation = -96.403073 kcal Electronic energy + Delta-G solvation = -28495.400213 eV Core-core repulsion = 24391.983939 eV Total energy + Delta-G solvation = -4103.416274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.25270 -37.90698 -37.55905 -36.42651 -36.11843 -35.47596 -33.08886 -32.24856 -30.41952 -29.96718 -29.38480 -28.05266 -25.31442 -24.54358 -23.58804 -21.61944 -20.70854 -20.15117 -20.03329 -19.18805 -18.53196 -17.55275 -16.74450 -16.73864 -16.47784 -15.92714 -15.86315 -15.22768 -15.00614 -14.69647 -14.34773 -14.05141 -13.85376 -13.81876 -13.66216 -13.51927 -13.01749 -12.83858 -12.55260 -12.45630 -12.33888 -12.22228 -12.14268 -12.07536 -11.94904 -11.74512 -11.55861 -11.50201 -11.05392 -10.83261 -10.76054 -10.60707 -10.41530 -10.12810 -10.01921 -9.90547 -9.78070 -9.63930 -9.61722 -9.28127 -8.57654 -6.77559 -5.74762 -3.09963 -0.21177 2.12293 2.26699 2.89062 3.35989 3.38839 3.43710 3.44442 3.71211 4.06854 4.26009 4.35481 4.46301 4.48251 4.54677 4.79194 4.95359 5.10881 5.17875 5.27834 5.31745 5.42469 5.46043 5.56121 5.58338 5.69634 5.75485 5.82082 5.89662 5.97450 6.05862 6.20844 6.28657 6.32355 6.39840 6.51221 6.54705 6.67851 6.70731 6.93076 7.14572 7.20864 7.54120 7.63008 7.80103 7.88540 8.29608 9.20413 9.82091 10.51501 11.37550 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017804 B = 0.001861 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.274144 B =15042.775300 C =16139.356399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.135 3.865 3 H 0.107 0.893 4 N -1.101 6.101 5 S 2.617 3.383 6 C -0.676 4.676 7 O -0.955 6.955 8 O -0.954 6.954 9 C 0.504 3.496 10 O -0.529 6.529 11 N -0.723 5.723 12 C 0.117 3.883 13 C -0.127 4.127 14 C -0.122 4.122 15 C 0.162 3.838 16 H 0.030 0.970 17 C -0.124 4.124 18 C -0.151 4.151 19 C 0.173 3.827 20 N -0.596 5.596 21 C -0.228 4.228 22 H 0.073 0.927 23 C -0.005 4.005 24 N -0.918 5.918 25 Si 0.908 3.092 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.284 1.284 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.427 0.573 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.024 0.976 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 9.463 -22.188 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.023 3.977 3 H 0.125 0.875 4 N -0.861 5.861 5 S 2.708 3.292 6 C -0.826 4.826 7 O -0.945 6.945 8 O -0.944 6.944 9 C 0.287 3.713 10 O -0.405 6.405 11 N -0.375 5.375 12 C -0.006 4.006 13 C -0.166 4.166 14 C -0.162 4.162 15 C 0.055 3.945 16 H 0.048 0.952 17 C -0.162 4.162 18 C -0.189 4.189 19 C 0.048 3.952 20 N -0.320 5.320 21 C -0.356 4.356 22 H 0.091 0.909 23 C -0.202 4.202 24 N -0.564 5.564 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.264 0.736 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.236 0.764 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.042 0.958 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.025 8.756 -22.907 25.252 hybrid contribution 1.366 -0.009 0.831 1.599 sum -4.659 8.748 -22.075 24.198 Atomic orbital electron populations 1.22300 0.92120 1.04100 1.04277 1.20634 0.96608 0.96077 0.84381 0.87520 1.55493 1.81671 1.20547 1.28417 1.04732 0.76423 0.74977 0.73057 1.30557 1.22151 1.16791 1.13073 1.93640 1.84472 1.57660 1.58740 1.93625 1.46324 1.70770 1.83654 1.20628 0.80653 0.85213 0.84773 1.90737 1.37365 1.25935 1.86483 1.46092 1.53461 1.32171 1.05781 1.21567 0.99670 0.96605 0.82755 1.21843 1.00979 0.99884 0.93878 1.22028 1.01673 0.99457 0.93058 1.20925 0.91261 0.94937 0.87395 0.95229 1.22585 0.96405 1.00134 0.97070 1.23012 0.99811 1.00745 0.95363 1.21397 0.84075 0.93840 0.95903 1.44528 1.02035 1.69822 1.15634 1.18900 0.81226 1.19588 1.15926 0.90909 1.24900 0.97635 0.98038 0.99592 1.69922 1.31741 1.30821 1.23963 0.86262 0.84875 0.77472 0.77517 1.21178 1.21623 1.21089 0.91171 0.90752 0.89521 0.73570 0.84902 0.85126 0.85499 0.76420 0.91227 0.91265 0.91620 0.91696 0.91621 0.92233 0.92058 0.92656 0.92561 0.92504 0.91338 0.95841 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 9.41 37.16 0.35 -0.60 16 2 C 0.13 0.85 3.09 -69.08 -0.21 0.64 16 3 H 0.11 0.34 7.15 -51.93 -0.37 -0.03 16 4 N -1.10 -7.69 5.15 -5.88 -0.03 -7.72 16 5 S 2.62 17.55 6.02 -107.50 -0.65 16.90 16 6 C -0.68 -2.53 10.78 101.05 1.09 -1.45 16 7 O -0.95 -10.12 18.08 -57.54 -1.04 -11.16 16 8 O -0.95 -8.73 17.11 -57.54 -0.98 -9.71 16 9 C 0.50 4.77 7.22 -10.99 -0.08 4.69 16 10 O -0.53 -7.20 15.99 5.55 0.09 -7.11 16 11 N -0.72 -6.02 5.45 -60.29 -0.33 -6.35 16 12 C 0.12 1.31 5.68 -4.04 -0.02 1.29 16 13 C -0.13 -1.46 5.10 -26.73 -0.14 -1.59 16 14 C -0.12 -2.02 4.72 -26.73 -0.13 -2.15 16 15 C 0.16 3.08 3.16 -66.95 -0.21 2.87 16 16 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 17 C -0.12 -2.00 5.71 -24.90 -0.14 -2.14 16 18 C -0.15 -2.74 7.08 -24.59 -0.17 -2.92 16 19 C 0.17 4.10 5.41 -2.53 -0.01 4.08 16 20 N -0.60 -14.57 3.13 -162.58 -0.51 -15.07 16 21 C -0.23 -6.14 9.70 -15.06 -0.15 -6.29 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 24 N -0.92 -26.60 10.58 55.49 0.59 -26.02 16 25 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.27 7.56 -51.93 -0.39 -0.12 16 31 H 0.09 0.53 7.42 -51.93 -0.39 0.14 16 32 H 0.43 3.27 8.17 -34.47 -0.28 2.99 16 33 H 0.13 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 35 H 0.13 0.28 7.44 -51.93 -0.39 -0.11 16 36 H 0.40 2.10 7.89 -40.82 -0.32 1.77 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.67 7.65 -51.93 -0.40 0.27 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.22 7.84 -51.93 -0.41 0.82 16 42 H 0.06 1.06 8.03 -51.93 -0.42 0.65 16 43 H 0.06 0.95 7.78 -51.93 -0.40 0.54 16 44 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.07 1.82 6.93 -51.93 -0.36 1.46 16 48 H 0.02 0.61 8.06 -51.93 -0.42 0.19 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 404.39 15.07 6.09 6.09 Total: -1.00 -36.88 404.39 -10.03 -46.91 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -8.32 Total: 0.24 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 0.08 Total: -3.79 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.28 Total: -55.16 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -1.94 Total: -27.98 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 17.55 SS G_CDS: -0.65 Total: 16.90 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.88 -10.03 -46.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663108753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.492 kcal (2) G-P(sol) polarization free energy of solvation -36.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds