Wall clock time and date at job start Wed Apr 1 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47253 * 2 1 4 4 N 1.46505 * 109.46936 * 240.00050 * 2 1 3 5 5 S 1.65596 * 119.99714 * 95.00260 * 4 2 1 6 6 C 1.81399 * 104.44905 * 64.99956 * 5 4 2 7 7 O 1.42110 * 104.27500 * 181.06722 * 5 4 2 8 8 O 1.42095 * 104.27942 * 308.92357 * 5 4 2 9 9 C 1.50697 * 109.46799 * 120.00008 * 2 1 3 10 10 O 1.21287 * 119.99531 * 120.00089 * 9 2 1 11 11 N 1.34770 * 120.00313 * 299.99881 * 9 2 1 12 12 C 1.46504 * 119.99978 * 179.97438 * 11 9 2 13 13 C 1.53005 * 109.46979 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47040 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46895 * 174.93436 * 14 13 12 16 16 H 1.09007 * 109.87324 * 306.13617 * 15 14 13 17 17 C 1.54321 * 110.01252 * 67.23881 * 15 14 13 18 18 C 1.55149 * 102.94179 * 141.68277 * 17 15 14 19 19 C 1.54908 * 101.58153 * 324.49640 * 18 17 15 20 20 N 1.47023 * 109.87930 * 185.12435 * 15 14 13 21 21 C 1.36931 * 125.65028 * 61.45423 * 20 15 14 22 22 H 1.08002 * 120.00168 * 14.67814 * 21 20 15 23 23 C 1.38815 * 119.99820 * 194.68515 * 21 20 15 24 24 N 1.31619 * 120.00482 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99755 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47237 * 59.99677 * 25 23 21 27 27 H 1.48507 * 109.46906 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47454 * 299.99494 * 25 23 21 29 29 H 1.09004 * 109.47222 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47283 * 300.00226 * 1 2 3 31 31 H 1.09006 * 109.47117 * 60.00101 * 1 2 3 32 32 H 0.96993 * 119.99593 * 275.00039 * 4 2 1 33 33 H 1.08998 * 109.47518 * 59.99945 * 6 5 4 34 34 H 1.09002 * 109.46965 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47330 * 299.99118 * 6 5 4 36 36 H 0.96998 * 120.00251 * 0.02562 * 11 9 2 37 37 H 1.08998 * 109.46704 * 60.00456 * 12 11 9 38 38 H 1.08991 * 109.47259 * 300.00065 * 12 11 9 39 39 H 1.08996 * 109.47046 * 60.00171 * 13 12 11 40 40 H 1.09001 * 109.47140 * 300.00302 * 13 12 11 41 41 H 1.09003 * 109.46886 * 54.93221 * 14 13 12 42 42 H 1.08996 * 109.46795 * 294.93480 * 14 13 12 43 43 H 1.08995 * 110.72025 * 23.31644 * 17 15 14 44 44 H 1.09007 * 110.71831 * 260.04719 * 17 15 14 45 45 H 1.09007 * 111.00405 * 206.42347 * 18 17 15 46 46 H 1.08997 * 111.01050 * 82.57372 * 18 17 15 47 47 H 1.09003 * 110.36843 * 155.85490 * 19 18 17 48 48 H 1.09001 * 110.36413 * 278.06156 * 19 18 17 49 49 H 0.96995 * 120.00670 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4121 0.1772 -2.5505 6 6 3.8313 1.1872 -2.0440 7 8 2.8123 -0.8076 -3.4937 8 8 1.2751 0.9966 -2.7846 9 6 2.0322 -0.7104 1.2305 10 8 2.7295 -1.6965 1.1191 11 7 1.7067 -0.2500 2.4545 12 6 2.1945 -0.9410 3.6507 13 6 1.6851 -0.2193 4.9000 14 6 2.1951 -0.9406 6.1492 15 6 1.7924 -0.1492 7.3951 16 1 2.1329 0.8824 7.3049 17 6 0.2595 -0.1826 7.5694 18 6 0.0871 -0.3051 9.1065 19 6 1.2916 -1.2032 9.4839 20 7 2.3815 -0.7673 8.5921 21 6 3.7205 -0.9143 8.8375 22 1 4.4407 -0.3626 8.2515 23 6 4.1524 -1.7725 9.8394 24 7 3.2748 -2.4446 10.5538 25 14 5.9792 -1.9736 10.1737 26 1 6.5609 -0.6604 10.5508 27 1 6.1757 -2.9390 11.2849 28 1 6.6532 -2.4811 8.9516 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.1109 -1.6561 -1.1949 33 1 4.6459 0.5362 -1.7267 34 1 4.1611 1.7979 -2.8845 35 1 3.5400 1.8343 -1.2166 36 1 1.1487 0.5384 2.5436 37 1 3.2845 -0.9414 3.6508 38 1 1.8308 -1.9685 3.6505 39 1 0.5952 -0.2185 4.9000 40 1 2.0493 0.8081 4.8999 41 1 3.2813 -1.0204 6.1047 42 1 1.7592 -1.9385 6.1960 43 1 -0.1674 -1.0484 7.0633 44 1 -0.1905 0.7402 7.2032 45 1 -0.8561 -0.7911 9.3564 46 1 0.1614 0.6704 9.5870 47 1 1.5691 -1.0473 10.5264 48 1 1.0523 -2.2520 9.3086 49 1 3.5765 -3.0441 11.2542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663108753.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:45 Heat of formation + Delta-G solvation = -126.309960 kcal Electronic energy + Delta-G solvation = -28496.697073 eV Core-core repulsion = 24391.983939 eV Total energy + Delta-G solvation = -4104.713134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.00712 -39.45289 -38.20226 -37.07353 -36.89033 -36.28383 -34.68482 -33.67951 -31.29924 -30.94809 -30.30201 -29.27097 -26.67491 -26.01367 -24.59473 -22.67824 -21.84726 -21.49180 -20.69209 -20.53141 -19.14942 -18.69701 -18.11663 -17.32650 -17.17347 -16.93819 -16.68643 -16.62187 -16.10525 -15.75471 -15.71123 -15.36041 -14.84635 -14.35282 -14.19441 -14.04498 -13.98322 -13.83994 -13.67366 -13.57636 -13.41241 -13.20487 -13.10813 -13.06990 -12.96912 -12.78178 -12.70533 -12.66248 -12.59071 -12.20532 -12.06125 -12.03169 -11.78923 -11.64962 -11.52137 -11.28854 -11.13946 -11.00803 -10.63202 -10.49968 -10.09944 -8.75511 -7.84151 -5.19539 -0.70270 1.44706 1.47216 1.53182 1.54545 1.60999 2.19658 2.50845 2.87711 3.24506 3.34377 3.53454 3.73567 3.87346 3.97934 4.02691 4.03777 4.07402 4.17083 4.20777 4.29467 4.37280 4.40120 4.47793 4.66294 4.81569 4.85643 4.87522 4.90286 4.93061 5.01899 5.05376 5.08298 5.17696 5.26730 5.34408 5.37737 5.43709 5.52219 5.56494 5.69773 5.74670 5.81954 5.92319 6.29445 6.55695 7.14338 7.21848 7.84787 8.51932 9.27311 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017804 B = 0.001861 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.274144 B =15042.775300 C =16139.356399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.135 3.865 3 H 0.147 0.853 4 N -1.107 6.107 5 S 2.627 3.373 6 C -0.660 4.660 7 O -1.001 7.001 8 O -0.981 6.981 9 C 0.504 3.496 10 O -0.576 6.576 11 N -0.708 5.708 12 C 0.124 3.876 13 C -0.108 4.108 14 C -0.113 4.113 15 C 0.151 3.849 16 H 0.037 0.963 17 C -0.110 4.110 18 C -0.138 4.138 19 C 0.174 3.826 20 N -0.619 5.619 21 C -0.230 4.230 22 H 0.077 0.923 23 C -0.067 4.067 24 N -0.950 5.950 25 Si 0.970 3.030 26 H -0.276 1.276 27 H -0.297 1.297 28 H -0.279 1.279 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.422 0.578 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.421 0.579 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.028 0.972 48 H -0.010 1.010 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 12.504 -23.622 27.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.024 3.976 3 H 0.164 0.836 4 N -0.866 5.866 5 S 2.723 3.277 6 C -0.814 4.814 7 O -0.992 6.992 8 O -0.971 6.971 9 C 0.289 3.711 10 O -0.455 6.455 11 N -0.361 5.361 12 C 0.000 4.000 13 C -0.147 4.147 14 C -0.153 4.153 15 C 0.045 3.955 16 H 0.055 0.945 17 C -0.148 4.148 18 C -0.177 4.177 19 C 0.049 3.951 20 N -0.344 5.344 21 C -0.360 4.360 22 H 0.095 0.905 23 C -0.260 4.260 24 N -0.599 5.599 25 Si 0.799 3.201 26 H -0.202 1.202 27 H -0.223 1.223 28 H -0.205 1.205 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.258 0.742 33 H 0.157 0.843 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.259 0.741 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.117 0.883 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.008 0.992 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.890 11.844 -24.384 27.970 hybrid contribution 1.634 -0.897 1.280 2.261 sum -5.257 10.946 -23.103 26.100 Atomic orbital electron populations 1.22335 0.91412 1.03680 1.05389 1.20855 0.97105 0.97335 0.82347 0.83597 1.55474 1.82162 1.20407 1.28555 1.04229 0.76729 0.74378 0.72388 1.30407 1.19703 1.16525 1.14737 1.93578 1.85167 1.59703 1.60731 1.93585 1.48472 1.70907 1.84147 1.21184 0.79686 0.84577 0.85679 1.90726 1.39567 1.28103 1.87142 1.45860 1.53223 1.32433 1.04586 1.21255 0.98569 0.96140 0.84027 1.21640 1.02306 0.99826 0.90889 1.21819 0.99785 0.98829 0.94872 1.21244 0.93341 0.94757 0.86132 0.94492 1.22585 0.94069 1.02801 0.95346 1.22884 0.97914 0.99742 0.97124 1.21196 0.86518 0.93472 0.93934 1.44853 1.01534 1.69824 1.18175 1.19257 0.82954 1.18682 1.15073 0.90545 1.25676 1.01510 0.98645 1.00163 1.70141 1.33241 1.31869 1.24662 0.85280 0.80414 0.77398 0.77044 1.20203 1.22335 1.20542 0.92435 0.88193 0.89830 0.74211 0.84314 0.83242 0.82988 0.74097 0.93129 0.93061 0.89030 0.89719 0.94562 0.94249 0.91111 0.88283 0.90237 0.91781 0.95398 0.99227 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.41 71.98 0.68 -0.79 16 2 C 0.13 1.36 3.09 44.24 0.14 1.50 16 3 H 0.15 0.28 7.15 -2.39 -0.02 0.27 16 4 N -1.11 -14.32 5.15 -172.52 -0.89 -15.21 16 5 S 2.63 32.29 6.02 -56.49 -0.34 31.95 16 6 C -0.66 -2.82 10.78 113.37 1.22 -1.60 16 7 O -1.00 -21.50 18.08 -127.65 -2.31 -23.81 16 8 O -0.98 -16.67 17.11 -127.65 -2.18 -18.85 16 9 C 0.50 8.56 7.22 87.66 0.63 9.19 16 10 O -0.58 -15.47 15.99 -3.05 -0.05 -15.52 16 11 N -0.71 -9.68 5.45 -463.06 -2.52 -12.20 16 12 C 0.12 2.58 5.68 86.38 0.49 3.07 16 13 C -0.11 -2.13 5.10 30.60 0.16 -1.97 16 14 C -0.11 -3.64 4.72 30.59 0.14 -3.49 16 15 C 0.15 5.47 3.16 45.34 0.14 5.61 16 16 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 17 C -0.11 -3.15 5.71 31.78 0.18 -2.97 16 18 C -0.14 -4.75 7.08 31.98 0.23 -4.52 16 19 C 0.17 8.46 5.41 86.86 0.47 8.93 16 20 N -0.62 -30.61 3.13 -668.27 -2.09 -32.70 16 21 C -0.23 -12.65 9.70 84.04 0.82 -11.83 16 22 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 23 C -0.07 -3.81 5.47 84.86 0.46 -3.35 16 24 N -0.95 -57.58 10.58 21.65 0.23 -57.35 16 25 Si 0.97 45.94 29.55 68.60 2.03 47.97 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 27 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 29 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.10 0.33 7.56 -2.39 -0.02 0.31 16 31 H 0.08 0.84 7.42 -2.38 -0.02 0.82 16 32 H 0.42 6.56 8.17 -96.75 -0.79 5.77 16 33 H 0.14 0.58 8.14 -2.39 -0.02 0.57 16 34 H 0.15 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.15 -0.05 7.44 -2.39 -0.02 -0.07 16 36 H 0.42 2.44 7.89 -92.71 -0.73 1.71 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.40 7.65 -2.39 -0.02 1.38 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.04 1.36 7.84 -2.39 -0.02 1.34 16 42 H 0.04 1.40 8.03 -2.39 -0.02 1.38 16 43 H 0.07 1.92 7.78 -2.39 -0.02 1.90 16 44 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 46 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.03 1.55 6.93 -2.39 -0.02 1.53 16 48 H -0.01 -0.56 8.06 -2.39 -0.02 -0.58 16 49 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -85.95 404.39 -2.94 -88.89 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -0.57 Total: 9.04 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.76 Total: -2.21 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -5.27 Total: -117.46 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -4.54 Total: -58.18 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 16 Polarization: 32.29 SS G_CDS: -0.34 Total: 31.95 kcal Total: -85.95 -2.94 -88.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663108753.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.418 kcal (2) G-P(sol) polarization free energy of solvation -85.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds