Wall clock time and date at job start Wed Apr 1 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47312 * 2 1 4 4 N 1.46500 * 109.46922 * 119.99495 * 2 1 3 5 5 S 1.65599 * 120.00174 * 264.99806 * 4 2 1 6 6 C 1.81404 * 104.44939 * 65.00388 * 5 4 2 7 7 O 1.42101 * 104.27824 * 308.92801 * 5 4 2 8 8 O 1.42103 * 104.27805 * 181.07193 * 5 4 2 9 9 C 1.50694 * 109.47248 * 239.99409 * 2 1 3 10 10 O 1.21279 * 120.00378 * 240.00191 * 9 2 1 11 11 N 1.34781 * 120.00039 * 60.00179 * 9 2 1 12 12 C 1.46493 * 120.00292 * 179.97438 * 11 9 2 13 13 C 1.53002 * 109.47388 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47061 * 180.02562 * 13 12 11 15 15 C 1.53007 * 109.46965 * 177.30475 * 14 13 12 16 16 H 1.09005 * 109.87417 * 306.77293 * 15 14 13 17 17 C 1.54318 * 109.88507 * 185.75401 * 15 14 13 18 18 C 1.55156 * 102.94499 * 218.39191 * 17 15 14 19 19 C 1.54911 * 101.58092 * 35.49984 * 18 17 15 20 20 N 1.47020 * 109.87951 * 67.78562 * 15 14 13 21 21 C 1.36946 * 125.65052 * 298.30824 * 20 15 14 22 22 H 1.07998 * 119.99682 * 343.50881 * 21 20 15 23 23 C 1.38813 * 119.99859 * 163.49182 * 21 20 15 24 24 N 1.31622 * 119.99643 * 161.45425 * 23 21 20 25 25 Si 1.86790 * 120.00293 * 341.46259 * 23 21 20 26 26 H 1.48508 * 109.47439 * 84.79296 * 25 23 21 27 27 H 1.48505 * 109.47541 * 204.79332 * 25 23 21 28 28 H 1.48497 * 109.47420 * 324.79249 * 25 23 21 29 29 H 1.09003 * 109.47220 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47038 * 300.00181 * 1 2 3 31 31 H 1.09002 * 109.47269 * 60.00074 * 1 2 3 32 32 H 0.97001 * 120.00481 * 85.00330 * 4 2 1 33 33 H 1.08998 * 109.46786 * 300.00157 * 6 5 4 34 34 H 1.08997 * 109.46709 * 59.99906 * 6 5 4 35 35 H 1.08999 * 109.47247 * 179.97438 * 6 5 4 36 36 H 0.97001 * 119.99299 * 0.02562 * 11 9 2 37 37 H 1.08994 * 109.47415 * 300.00299 * 12 11 9 38 38 H 1.09003 * 109.46903 * 60.00078 * 12 11 9 39 39 H 1.09004 * 109.46738 * 300.00257 * 13 12 11 40 40 H 1.08996 * 109.46560 * 60.00099 * 13 12 11 41 41 H 1.08996 * 109.47584 * 297.30261 * 14 13 12 42 42 H 1.09001 * 109.47083 * 57.31086 * 14 13 12 43 43 H 1.09007 * 110.72143 * 336.75056 * 17 15 14 44 44 H 1.09001 * 110.72389 * 100.02405 * 17 15 14 45 45 H 1.08999 * 111.00823 * 153.57011 * 18 17 15 46 46 H 1.08997 * 111.00396 * 277.38950 * 18 17 15 47 47 H 1.09002 * 110.36704 * 81.83027 * 19 18 17 48 48 H 1.09002 * 110.36871 * 204.15323 * 19 18 17 49 49 H 0.96995 * 119.99850 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 1.1962 5 16 2.4121 0.1773 2.5505 6 6 0.8407 0.8991 3.0985 7 8 3.2875 1.1907 2.0750 8 8 2.8605 -0.8027 3.4767 9 6 2.0323 -0.7105 -1.2303 10 8 2.7295 -1.6966 -1.1190 11 7 1.7068 -0.2501 -2.4545 12 6 2.1955 -0.9405 -3.6506 13 6 1.6849 -0.2198 -4.9000 14 6 2.1949 -0.9411 -6.1491 15 6 1.6297 -0.2607 -7.3975 16 1 0.5444 -0.1920 -7.3228 17 6 2.0194 -1.0648 -8.6556 18 6 2.3201 0.0445 -9.6979 19 6 2.9588 1.1411 -8.8094 20 7 2.2072 1.0840 -7.5387 21 6 2.0700 2.1098 -6.6419 22 1 1.2988 2.0676 -5.8871 23 6 2.9225 3.2036 -6.7029 24 7 2.5887 4.3318 -6.1128 25 14 4.5433 3.0745 -7.6225 26 1 4.3169 3.3451 -9.0651 27 1 5.5025 4.0684 -7.0771 28 1 5.0991 1.7076 -7.4566 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.1109 -1.6561 1.1951 33 1 0.4386 1.5354 2.3101 34 1 0.1315 0.1011 3.3185 35 1 1.0076 1.4941 3.9964 36 1 1.1494 0.5388 -2.5435 37 1 3.2855 -0.9401 -3.6505 38 1 1.8326 -1.9683 -3.6507 39 1 0.5949 -0.2206 -4.8998 40 1 2.0476 0.8081 -4.9000 41 1 3.2838 -0.8991 -6.1739 42 1 1.8719 -1.9819 -6.1249 43 1 2.9075 -1.6683 -8.4678 44 1 1.1899 -1.6900 -8.9861 45 1 3.0249 -0.3076 -10.4510 46 1 1.4017 0.4032 -10.1625 47 1 4.0131 0.9240 -8.6380 48 1 2.8429 2.1205 -9.2735 49 1 3.1842 5.0962 -6.1557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663108754.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:48 Heat of formation + Delta-G solvation = -118.427385 kcal Electronic energy + Delta-G solvation = -29193.709730 eV Core-core repulsion = 25089.338410 eV Total energy + Delta-G solvation = -4104.371320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.01522 -39.72396 -38.21724 -37.06759 -36.89682 -36.32090 -34.55894 -33.92576 -31.70460 -31.13304 -30.33386 -29.56745 -26.60512 -25.99204 -24.62794 -23.10796 -21.91833 -21.37089 -20.72553 -20.54983 -19.18893 -18.77263 -18.11710 -17.47415 -17.32284 -17.15413 -16.93068 -16.57132 -16.51397 -15.73121 -15.45567 -15.05819 -14.93456 -14.68995 -14.43793 -14.33528 -14.13510 -13.92023 -13.75475 -13.60998 -13.41595 -13.26517 -13.19616 -13.13871 -13.10355 -12.89122 -12.72233 -12.60373 -12.56451 -12.39170 -12.06877 -11.97999 -11.80076 -11.53277 -11.41654 -11.33674 -11.07225 -10.98369 -10.70063 -10.50612 -10.09964 -8.93730 -8.06563 -5.29355 -0.71622 1.30182 1.40551 1.45178 1.53316 1.63085 2.21981 2.47252 2.89016 3.17686 3.25813 3.38509 3.50431 3.88079 3.94249 3.98157 4.04589 4.07658 4.14585 4.18434 4.21825 4.26558 4.39820 4.48258 4.54600 4.69285 4.74504 4.80726 4.83853 4.87344 4.98283 4.99709 5.01911 5.03664 5.17587 5.20635 5.29283 5.30342 5.40641 5.43367 5.64591 5.66585 5.84398 5.95113 6.21621 6.51644 6.87163 7.15625 7.66797 8.25127 9.12398 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.002375 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.632830 B =11784.463595 C =12729.218331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.125 3.875 3 H 0.127 0.873 4 N -1.104 6.104 5 S 2.613 3.387 6 C -0.645 4.645 7 O -1.006 7.006 8 O -0.999 6.999 9 C 0.505 3.495 10 O -0.579 6.579 11 N -0.714 5.714 12 C 0.130 3.870 13 C -0.130 4.130 14 C -0.112 4.112 15 C 0.151 3.849 16 H 0.047 0.953 17 C -0.118 4.118 18 C -0.121 4.121 19 C 0.089 3.911 20 N -0.622 5.622 21 C -0.198 4.198 22 H 0.088 0.912 23 C -0.042 4.042 24 N -0.959 5.959 25 Si 0.932 3.068 26 H -0.281 1.281 27 H -0.322 1.322 28 H -0.272 1.272 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.423 0.577 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.415 0.585 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.019 0.981 48 H 0.034 0.966 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.911 -11.284 11.361 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 H 0.145 0.855 4 N -0.863 5.863 5 S 2.711 3.289 6 C -0.800 4.800 7 O -0.996 6.996 8 O -0.990 6.990 9 C 0.290 3.710 10 O -0.458 6.458 11 N -0.366 5.366 12 C 0.006 3.994 13 C -0.168 4.168 14 C -0.152 4.152 15 C 0.046 3.954 16 H 0.064 0.936 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.035 4.035 20 N -0.348 5.348 21 C -0.327 4.327 22 H 0.105 0.895 23 C -0.236 4.236 24 N -0.608 5.608 25 Si 0.765 3.235 26 H -0.208 1.208 27 H -0.252 1.252 28 H -0.197 1.197 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.259 0.741 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.168 0.832 36 H 0.252 0.748 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.117 0.883 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.037 0.963 48 H 0.053 0.947 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.502 -11.533 11.865 19.080 hybrid contribution 0.761 0.652 -0.496 1.118 sum -8.740 -10.881 11.368 18.001 Atomic orbital electron populations 1.22487 0.89637 1.04970 1.05985 1.20877 0.97748 0.97186 0.82782 0.85535 1.55317 1.84333 1.20589 1.26094 1.04546 0.78281 0.73493 0.72606 1.30402 1.19871 1.15234 1.14476 1.93582 1.64425 1.61673 1.79935 1.93565 1.81584 1.60346 1.63505 1.21157 0.79650 0.84503 0.85659 1.90667 1.39480 1.28476 1.87196 1.46008 1.53101 1.32283 1.05196 1.21298 0.97944 0.96297 0.83877 1.21940 1.01007 1.01263 0.92595 1.21832 0.99624 0.99157 0.94597 1.21272 0.96280 0.83538 0.94299 0.93563 1.22628 1.02514 0.96788 0.93622 1.22676 1.01109 0.95086 0.97050 1.22213 0.94879 0.98587 0.87865 1.45179 1.60628 1.09758 1.19242 1.18721 1.10540 0.94449 1.08947 0.89467 1.25390 1.01103 0.96142 1.00936 1.69876 1.37984 1.02030 1.50928 0.86263 0.83030 0.75962 0.78273 1.20825 1.25223 1.19747 0.90675 0.87858 0.89087 0.74109 0.82714 0.82234 0.83158 0.74816 0.94208 0.91126 0.90882 0.90893 0.94210 0.89924 0.90738 0.88326 0.89225 0.90702 0.96318 0.94747 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.38 71.98 0.67 -0.82 16 2 C 0.13 2.18 3.22 44.24 0.14 2.32 16 3 H 0.13 2.04 7.48 -2.39 -0.02 2.02 16 4 N -1.10 -19.72 5.15 -172.54 -0.89 -20.61 16 5 S 2.61 45.02 6.08 -56.49 -0.34 44.67 16 6 C -0.65 -2.85 10.04 113.37 1.14 -1.71 16 7 O -1.01 -27.12 17.39 -127.65 -2.22 -29.34 16 8 O -1.00 -24.92 18.08 -127.65 -2.31 -27.23 16 9 C 0.50 13.27 7.22 87.65 0.63 13.90 16 10 O -0.58 -19.87 15.99 -3.03 -0.05 -19.92 16 11 N -0.71 -17.88 5.45 -463.08 -2.52 -20.41 16 12 C 0.13 3.72 5.67 86.38 0.49 4.21 16 13 C -0.13 -4.00 4.64 30.59 0.14 -3.86 16 14 C -0.11 -3.40 4.72 30.59 0.14 -3.26 16 15 C 0.15 5.00 3.22 45.34 0.15 5.15 16 16 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 17 C -0.12 -3.03 6.48 31.78 0.21 -2.83 16 18 C -0.12 -3.49 7.09 31.99 0.23 -3.26 16 19 C 0.09 3.62 4.67 86.79 0.41 4.03 16 20 N -0.62 -27.05 2.99 -667.42 -1.99 -29.05 16 21 C -0.20 -10.24 8.39 84.03 0.70 -9.53 16 22 H 0.09 4.65 6.63 -2.91 -0.02 4.63 16 23 C -0.04 -2.40 5.47 84.86 0.46 -1.94 16 24 N -0.96 -58.28 13.97 21.65 0.30 -57.98 16 25 Si 0.93 47.18 24.24 68.60 1.66 48.85 16 26 H -0.28 -13.68 6.43 99.48 0.64 -13.04 16 27 H -0.32 -17.00 7.11 99.48 0.71 -16.29 16 28 H -0.27 -13.37 6.20 99.48 0.62 -12.75 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.24 5.78 -2.38 -0.01 0.22 16 31 H 0.09 0.66 7.57 -2.39 -0.02 0.64 16 32 H 0.42 8.08 8.17 -96.75 -0.79 7.28 16 33 H 0.15 0.11 6.77 -2.39 -0.02 0.10 16 34 H 0.16 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.15 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.41 8.59 7.89 -92.71 -0.73 7.86 16 37 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 39 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.07 2.89 4.92 -2.39 -0.01 2.88 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.07 1.81 7.85 -2.38 -0.02 1.79 16 44 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.02 0.82 5.44 -2.39 -0.01 0.80 16 48 H 0.03 1.54 6.13 -2.39 -0.01 1.53 16 49 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -86.11 389.92 -3.55 -89.66 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.71 Total: 18.95 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.52 Total: 2.40 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -5.10 Total: -128.04 kcal Atomic # 8 Polarization: -71.90 SS G_CDS: -4.58 Total: -76.48 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.66 Total: 48.85 kcal Atomic # 16 Polarization: 45.02 SS G_CDS: -0.34 Total: 44.67 kcal Total: -86.11 -3.55 -89.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663108754.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.771 kcal (2) G-P(sol) polarization free energy of solvation -86.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds