Wall clock time and date at job start Wed Apr 1 2020 04:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46507 * 109.47485 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99484 * 89.99906 * 4 3 2 6 6 O 1.21282 * 119.99563 * 179.97438 * 5 4 3 7 7 C 1.50700 * 120.00379 * 0.02562 * 5 4 3 8 8 N 1.46499 * 109.47209 * 179.97438 * 7 5 4 9 9 C 1.46500 * 119.99529 * 274.99893 * 8 7 5 10 10 S 1.65596 * 120.00264 * 94.99265 * 8 7 5 11 11 C 1.81402 * 104.44733 * 89.99912 * 10 8 7 12 12 O 1.42097 * 104.28064 * 206.07326 * 10 8 7 13 13 O 1.42105 * 104.27673 * 333.93338 * 10 8 7 14 14 C 1.46499 * 120.00102 * 270.00258 * 4 3 2 15 15 H 1.09003 * 110.88253 * 356.11675 * 14 4 3 16 16 C 1.55150 * 111.00468 * 119.99938 * 14 4 3 17 17 C 1.54322 * 102.94377 * 153.57417 * 16 14 4 18 18 N 1.47014 * 107.26999 * 337.80947 * 17 16 14 19 19 C 1.36945 * 125.64986 * 178.92078 * 18 17 16 20 20 H 1.07996 * 119.99955 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99443 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00479 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99702 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47029 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47216 * 119.99934 * 23 21 19 26 26 H 1.48502 * 109.47028 * 240.00233 * 23 21 19 27 27 C 1.47426 * 108.70737 * 358.93478 * 18 17 16 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.09000 * 109.46733 * 299.99621 * 7 5 4 36 36 H 1.08991 * 109.47449 * 59.99250 * 7 5 4 37 37 H 1.08995 * 109.47623 * 90.00249 * 9 8 7 38 38 H 1.09009 * 109.46750 * 209.99854 * 9 8 7 39 39 H 1.09002 * 109.47275 * 329.99524 * 9 8 7 40 40 H 1.09002 * 109.46828 * 60.00097 * 11 10 8 41 41 H 1.09002 * 109.47055 * 179.97438 * 11 10 8 42 42 H 1.08994 * 109.47671 * 300.00182 * 11 10 8 43 43 H 1.09000 * 110.71878 * 271.94140 * 16 14 4 44 44 H 1.08999 * 110.72074 * 35.03005 * 16 14 4 45 45 H 1.08999 * 109.87947 * 97.22620 * 17 16 14 46 46 H 1.08995 * 109.88150 * 218.38986 * 17 16 14 47 47 H 0.96996 * 120.00301 * 179.97438 * 22 21 19 48 48 H 1.08991 * 110.36965 * 265.29478 * 27 18 17 49 49 H 1.08998 * 110.36706 * 142.96650 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1794 1.4422 -1.1664 6 8 5.3922 1.4427 -1.1659 7 6 3.4264 1.4426 -2.4718 8 7 4.3788 1.4429 -3.5849 9 6 4.9390 2.7070 -4.0692 10 16 4.8223 0.0145 -4.2956 11 6 3.6138 -0.2228 -5.6275 12 8 6.1116 0.2757 -4.8328 13 8 4.6368 -0.9571 -3.2753 14 6 4.2371 1.4425 1.2696 15 1 3.5511 1.5116 2.1139 16 6 5.1423 0.1882 1.3897 17 6 6.2652 0.6616 2.3365 18 7 6.3048 2.1295 2.2669 19 6 7.1511 2.9396 2.9761 20 1 7.1009 4.0115 2.8542 21 6 8.0732 2.3829 3.8516 22 7 8.1347 1.0766 3.9998 23 14 9.2271 3.4880 4.8196 24 1 8.9586 4.9073 4.4748 25 1 9.0070 3.2811 6.2735 26 1 10.6336 3.1541 4.4795 27 6 5.2824 2.5852 1.3075 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 2.7995 0.5528 -2.5298 36 1 2.8000 2.3326 -2.5297 37 1 5.8558 2.9308 -3.5238 38 1 5.1606 2.6222 -5.1331 39 1 4.2173 3.5084 -3.9111 40 1 3.6720 0.6137 -6.3240 41 1 3.8327 -1.1508 -6.1556 42 1 2.6110 -0.2733 -5.2035 43 1 4.5921 -0.6437 1.8294 44 1 5.5465 -0.0903 0.4164 45 1 6.0482 0.3445 3.3565 46 1 7.2210 0.2492 2.0132 47 1 8.7793 0.6876 4.6113 48 1 5.7243 2.7279 0.3214 49 1 4.8214 3.5097 1.6550 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664668436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:04 Heat of formation + Delta-G solvation = -56.371640 kcal Electronic energy + Delta-G solvation = -30900.525744 eV Core-core repulsion = 26798.845363 eV Total energy + Delta-G solvation = -4101.680381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.13327 -37.28405 -37.10509 -36.03027 -35.92297 -35.61066 -32.95681 -31.77566 -29.82016 -29.43462 -28.67778 -27.18367 -26.01378 -25.19720 -24.08482 -21.98894 -21.02156 -19.89977 -19.21726 -18.62779 -17.86292 -17.16252 -16.75889 -16.60052 -16.27829 -15.66657 -15.06735 -14.72284 -14.57380 -14.40442 -14.27608 -13.84718 -13.81542 -13.52628 -13.46273 -13.14891 -13.02438 -12.89212 -12.42959 -12.36551 -12.27204 -12.16146 -12.06912 -11.88333 -11.77130 -11.68758 -11.59822 -11.38309 -11.20865 -10.85825 -10.80332 -10.75738 -10.51993 -10.27436 -9.96511 -9.86765 -9.58644 -9.52722 -8.75370 -8.48443 -8.23008 -6.62193 -5.56053 -2.88364 0.00203 2.37283 2.87723 3.18364 3.48863 3.53802 3.56640 3.78182 3.88521 4.27001 4.49146 4.52924 4.58953 4.63858 4.73103 4.84485 4.95548 5.05139 5.14881 5.24473 5.27000 5.34677 5.44280 5.52723 5.56504 5.63281 5.67934 5.72274 5.85204 5.86364 5.89797 5.96084 6.02102 6.12597 6.21280 6.36009 6.62867 6.71552 6.80227 6.88812 7.34576 7.67799 7.73585 7.85181 7.99324 8.41236 8.52694 9.37244 9.98036 10.65557 11.55646 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.003469 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.491452 B = 8069.612677 C = 9409.063926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.149 4.149 3 C 0.108 3.892 4 N -0.605 5.605 5 C 0.492 3.508 6 O -0.498 6.498 7 C 0.107 3.893 8 N -0.985 5.985 9 C 0.096 3.904 10 S 2.608 3.392 11 C -0.678 4.678 12 O -0.946 6.946 13 O -0.942 6.942 14 C 0.132 3.868 15 H 0.089 0.911 16 C -0.153 4.153 17 C 0.185 3.815 18 N -0.602 5.602 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.125 3.875 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.041 0.959 47 H 0.250 0.750 48 H 0.049 0.951 49 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.550 -0.814 -19.421 28.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C -0.016 4.016 4 N -0.339 5.339 5 C 0.276 3.724 6 O -0.372 6.372 7 C -0.023 4.023 8 N -0.822 5.822 9 C -0.049 4.049 10 S 2.699 3.301 11 C -0.827 4.827 12 O -0.936 6.936 13 O -0.933 6.933 14 C 0.029 3.971 15 H 0.107 0.893 16 C -0.192 4.192 17 C 0.060 3.940 18 N -0.329 5.329 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.002 4.002 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -18.980 -1.334 -19.041 26.918 hybrid contribution -0.112 0.651 0.246 0.705 sum -19.091 -0.682 -18.795 26.799 Atomic orbital electron populations 1.21711 0.95286 1.01924 1.01773 1.22041 0.95794 0.97402 1.03488 1.21679 0.80035 0.96817 1.03068 1.47988 1.05932 1.73743 1.06219 1.20916 0.88792 0.77427 0.85243 1.90769 1.13326 1.46515 1.86544 1.21242 0.91035 1.04855 0.85155 1.57126 1.58641 1.23366 1.43033 1.21500 0.99903 0.84487 0.98998 1.05171 0.75761 0.73276 0.75865 1.30647 1.19558 1.11535 1.20932 1.93620 1.34996 1.83766 1.81213 1.93645 1.86613 1.59265 1.53727 1.22407 0.93294 0.98371 0.83048 0.89262 1.23218 0.98238 0.95831 1.01898 1.21038 0.94095 0.83456 0.95390 1.44332 1.38947 1.02260 1.47371 1.19085 1.10384 0.89301 1.16190 0.90581 1.24788 0.99708 0.95943 1.00246 1.69989 1.38313 1.08578 1.40100 0.86053 0.80809 0.79404 0.79565 1.20619 1.21906 1.21850 1.21916 0.89621 0.93467 0.95195 0.92782 0.92499 0.92524 0.90993 0.91545 0.90811 0.90068 0.87646 0.87604 0.91270 0.91138 0.91136 0.85482 0.85474 0.85501 0.92829 0.90755 0.93874 0.94047 0.93960 0.93314 0.95316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.15 -1.31 6.26 -26.74 -0.17 -1.48 16 3 C 0.11 1.00 5.21 -4.04 -0.02 0.98 16 4 N -0.60 -8.74 2.56 -163.67 -0.42 -9.16 16 5 C 0.49 7.66 7.02 -10.99 -0.08 7.59 16 6 O -0.50 -10.43 12.46 5.56 0.07 -10.36 16 7 C 0.11 1.05 4.31 -5.19 -0.02 1.02 16 8 N -0.98 -10.21 2.61 -123.05 -0.32 -10.53 16 9 C 0.10 0.87 10.22 59.85 0.61 1.49 16 10 S 2.61 28.85 5.96 -107.50 -0.64 28.20 16 11 C -0.68 -3.49 10.99 101.05 1.11 -2.38 16 12 O -0.95 -14.10 17.09 -57.54 -0.98 -15.08 16 13 O -0.94 -14.11 16.99 -57.54 -0.98 -15.08 16 14 C 0.13 2.47 3.55 -65.78 -0.23 2.24 16 15 H 0.09 1.55 7.86 -51.93 -0.41 1.14 16 16 C -0.15 -3.30 6.33 -24.90 -0.16 -3.46 16 17 C 0.19 4.98 5.37 -3.07 -0.02 4.97 16 18 N -0.60 -16.76 3.39 -170.08 -0.58 -17.34 16 19 C -0.22 -6.58 10.28 -15.06 -0.15 -6.74 16 20 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 22 N -0.92 -28.72 10.31 55.49 0.57 -28.15 16 23 Si 0.91 23.26 29.55 -169.99 -5.02 18.24 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 27 C 0.12 2.86 6.58 -2.53 -0.02 2.84 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.61 7.22 -51.93 -0.38 0.23 16 33 H 0.07 0.46 6.44 -51.93 -0.33 0.13 16 34 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 35 H 0.11 0.79 6.65 -51.93 -0.35 0.45 16 36 H 0.11 0.64 7.22 -51.93 -0.38 0.26 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.48 7.79 -51.92 -0.40 0.07 16 39 H 0.07 0.45 7.94 -51.93 -0.41 0.03 16 40 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 41 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 42 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.75 6.25 -51.93 -0.32 1.42 16 45 H 0.04 1.24 7.38 -51.93 -0.38 0.85 16 46 H 0.04 1.26 7.51 -51.93 -0.39 0.87 16 47 H 0.25 7.52 8.31 -40.82 -0.34 7.19 16 48 H 0.05 1.21 5.53 -51.93 -0.29 0.92 16 49 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 397.07 15.07 5.98 5.98 Total: -1.00 -41.40 397.07 -9.41 -50.82 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -8.23 Total: -3.61 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 1.13 Total: 6.07 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: -0.75 Total: -65.18 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -1.89 Total: -40.53 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Atomic # 16 Polarization: 28.85 SS G_CDS: -0.64 Total: 28.20 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -41.40 -9.41 -50.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664668436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.552 kcal (2) G-P(sol) polarization free energy of solvation -41.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds