Wall clock time and date at job start Wed Apr 1 2020 04:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46507 * 109.47485 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99484 * 89.99906 * 4 3 2 6 6 O 1.21282 * 119.99563 * 179.97438 * 5 4 3 7 7 C 1.50700 * 120.00379 * 0.02562 * 5 4 3 8 8 N 1.46499 * 109.47209 * 179.97438 * 7 5 4 9 9 C 1.46500 * 119.99529 * 274.99893 * 8 7 5 10 10 S 1.65596 * 120.00264 * 94.99265 * 8 7 5 11 11 C 1.81402 * 104.44733 * 89.99912 * 10 8 7 12 12 O 1.42097 * 104.28064 * 206.07326 * 10 8 7 13 13 O 1.42105 * 104.27673 * 333.93338 * 10 8 7 14 14 C 1.46499 * 120.00102 * 270.00258 * 4 3 2 15 15 H 1.09003 * 110.88253 * 356.11675 * 14 4 3 16 16 C 1.55150 * 111.00468 * 119.99938 * 14 4 3 17 17 C 1.54322 * 102.94377 * 153.57417 * 16 14 4 18 18 N 1.47014 * 107.26999 * 337.80947 * 17 16 14 19 19 C 1.36945 * 125.64986 * 178.92078 * 18 17 16 20 20 H 1.07996 * 119.99955 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99443 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00479 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99702 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47029 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47216 * 119.99934 * 23 21 19 26 26 H 1.48502 * 109.47028 * 240.00233 * 23 21 19 27 27 C 1.47426 * 108.70737 * 358.93478 * 18 17 16 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.09000 * 109.46733 * 299.99621 * 7 5 4 36 36 H 1.08991 * 109.47449 * 59.99250 * 7 5 4 37 37 H 1.08995 * 109.47623 * 90.00249 * 9 8 7 38 38 H 1.09009 * 109.46750 * 209.99854 * 9 8 7 39 39 H 1.09002 * 109.47275 * 329.99524 * 9 8 7 40 40 H 1.09002 * 109.46828 * 60.00097 * 11 10 8 41 41 H 1.09002 * 109.47055 * 179.97438 * 11 10 8 42 42 H 1.08994 * 109.47671 * 300.00182 * 11 10 8 43 43 H 1.09000 * 110.71878 * 271.94140 * 16 14 4 44 44 H 1.08999 * 110.72074 * 35.03005 * 16 14 4 45 45 H 1.08999 * 109.87947 * 97.22620 * 17 16 14 46 46 H 1.08995 * 109.88150 * 218.38986 * 17 16 14 47 47 H 0.96996 * 120.00301 * 179.97438 * 22 21 19 48 48 H 1.08991 * 110.36965 * 265.29478 * 27 18 17 49 49 H 1.08998 * 110.36706 * 142.96650 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1794 1.4422 -1.1664 6 8 5.3922 1.4427 -1.1659 7 6 3.4264 1.4426 -2.4718 8 7 4.3788 1.4429 -3.5849 9 6 4.9390 2.7070 -4.0692 10 16 4.8223 0.0145 -4.2956 11 6 3.6138 -0.2228 -5.6275 12 8 6.1116 0.2757 -4.8328 13 8 4.6368 -0.9571 -3.2753 14 6 4.2371 1.4425 1.2696 15 1 3.5511 1.5116 2.1139 16 6 5.1423 0.1882 1.3897 17 6 6.2652 0.6616 2.3365 18 7 6.3048 2.1295 2.2669 19 6 7.1511 2.9396 2.9761 20 1 7.1009 4.0115 2.8542 21 6 8.0732 2.3829 3.8516 22 7 8.1347 1.0766 3.9998 23 14 9.2271 3.4880 4.8196 24 1 8.9586 4.9073 4.4748 25 1 9.0070 3.2811 6.2735 26 1 10.6336 3.1541 4.4795 27 6 5.2824 2.5852 1.3075 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 2.7995 0.5528 -2.5298 36 1 2.8000 2.3326 -2.5297 37 1 5.8558 2.9308 -3.5238 38 1 5.1606 2.6222 -5.1331 39 1 4.2173 3.5084 -3.9111 40 1 3.6720 0.6137 -6.3240 41 1 3.8327 -1.1508 -6.1556 42 1 2.6110 -0.2733 -5.2035 43 1 4.5921 -0.6437 1.8294 44 1 5.5465 -0.0903 0.4164 45 1 6.0482 0.3445 3.3565 46 1 7.2210 0.2492 2.0132 47 1 8.7793 0.6876 4.6113 48 1 5.7243 2.7279 0.3214 49 1 4.8214 3.5097 1.6550 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664668436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:03 Heat of formation + Delta-G solvation = -89.660610 kcal Electronic energy + Delta-G solvation = -30901.969262 eV Core-core repulsion = 26798.845363 eV Total energy + Delta-G solvation = -4103.123899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.38233 -38.71877 -38.18962 -37.11870 -36.96842 -36.60092 -34.54629 -33.23340 -31.19496 -30.30139 -30.04352 -28.66186 -26.87249 -26.63822 -25.61066 -22.94375 -22.36008 -21.91334 -20.29833 -19.63294 -18.95339 -18.66676 -18.14671 -17.56676 -17.19440 -16.91170 -16.63529 -16.07659 -15.91589 -15.58210 -15.40186 -15.15708 -14.63811 -14.43503 -14.28640 -14.15125 -14.04030 -13.87930 -13.85095 -13.69290 -13.62954 -13.27472 -13.14269 -12.97950 -12.90596 -12.83989 -12.73628 -12.58761 -12.47995 -12.26471 -12.07129 -11.99534 -11.95698 -11.89179 -11.84065 -11.68769 -11.37297 -10.85368 -10.74553 -9.83680 -9.55916 -8.86448 -7.86105 -5.22692 -0.73816 1.41534 1.45217 1.55223 1.60793 1.75240 2.06872 2.49202 3.07334 3.15000 3.31154 3.57501 3.65864 3.72614 3.93080 4.05396 4.09332 4.09391 4.20201 4.22148 4.25833 4.33568 4.44823 4.51071 4.65487 4.66201 4.69118 4.75762 4.81299 4.90732 4.93461 5.00012 5.00889 5.08608 5.10976 5.15583 5.34465 5.37895 5.40135 5.47343 5.59618 5.61351 5.67758 5.81517 6.16509 6.58952 7.06559 7.37996 7.74545 8.41240 9.24899 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.003469 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.491452 B = 8069.612677 C = 9409.063926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.147 4.147 3 C 0.100 3.900 4 N -0.602 5.602 5 C 0.476 3.524 6 O -0.566 6.566 7 C 0.109 3.891 8 N -0.987 5.987 9 C 0.093 3.907 10 S 2.587 3.413 11 C -0.632 4.632 12 O -1.005 7.005 13 O -0.998 6.998 14 C 0.154 3.846 15 H 0.111 0.889 16 C -0.138 4.138 17 C 0.198 3.802 18 N -0.624 5.624 19 C -0.242 4.242 20 H 0.083 0.917 21 C -0.071 4.071 22 N -0.955 5.955 23 Si 0.985 3.015 24 H -0.263 1.263 25 H -0.285 1.285 26 H -0.295 1.295 27 C 0.123 3.877 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.159 0.841 37 H 0.019 0.981 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.157 0.843 41 H 0.144 0.856 42 H 0.162 0.838 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.019 0.981 46 H -0.012 1.012 47 H 0.246 0.754 48 H 0.030 0.970 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.154 0.736 -21.628 33.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.186 4.186 3 C -0.021 4.021 4 N -0.334 5.334 5 C 0.264 3.736 6 O -0.444 6.444 7 C -0.020 4.020 8 N -0.824 5.824 9 C -0.052 4.052 10 S 2.686 3.314 11 C -0.787 4.787 12 O -0.996 6.996 13 O -0.988 6.988 14 C 0.049 3.951 15 H 0.129 0.871 16 C -0.177 4.177 17 C 0.072 3.928 18 N -0.351 5.351 19 C -0.371 4.371 20 H 0.100 0.900 21 C -0.264 4.264 22 N -0.604 5.604 23 Si 0.813 3.187 24 H -0.187 1.187 25 H -0.212 1.212 26 H -0.223 1.223 27 C -0.003 4.003 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.153 0.847 36 H 0.176 0.824 37 H 0.038 0.962 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.175 0.825 41 H 0.162 0.838 42 H 0.180 0.820 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.037 0.963 46 H 0.006 0.994 47 H 0.055 0.945 48 H 0.048 0.952 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.621 0.240 -21.231 31.761 hybrid contribution 1.280 0.144 0.824 1.530 sum -22.341 0.383 -20.407 30.261 Atomic orbital electron populations 1.21669 0.92938 1.02318 1.03138 1.22004 0.97697 0.96702 1.02148 1.22120 0.76264 0.97778 1.05907 1.48077 1.08084 1.73000 1.04271 1.22237 0.88526 0.75532 0.87314 1.90756 1.16608 1.49438 1.87627 1.21567 0.90536 1.08628 0.81249 1.57013 1.58766 1.23118 1.43464 1.21601 0.98904 0.85187 0.99514 1.05396 0.76385 0.72763 0.76847 1.30255 1.17509 1.13661 1.17308 1.93543 1.39843 1.84273 1.81915 1.93573 1.87461 1.60827 1.56967 1.21975 0.92712 0.94057 0.86363 0.87114 1.22967 0.97371 0.98124 0.99249 1.20711 0.93531 0.83540 0.95035 1.44662 1.40004 1.02495 1.47889 1.19526 1.11149 0.89996 1.16448 0.89959 1.25767 1.01525 0.97508 1.01578 1.70238 1.38926 1.10539 1.40687 0.84909 0.77724 0.78230 0.77836 1.18711 1.21189 1.22254 1.22003 0.89691 0.95623 0.92963 0.90289 0.92249 0.92703 0.93615 0.91847 0.86289 0.88943 0.84726 0.82350 0.96189 0.88964 0.87512 0.82478 0.83801 0.81986 0.90503 0.93117 0.96280 0.99387 0.94450 0.95249 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.91 71.98 0.71 -0.52 16 2 C -0.15 -2.14 6.26 30.59 0.19 -1.94 16 3 C 0.10 1.46 5.21 86.38 0.45 1.91 16 4 N -0.60 -16.47 2.56 -790.13 -2.02 -18.49 16 5 C 0.48 14.56 7.02 87.66 0.62 15.18 16 6 O -0.57 -25.10 12.46 -3.04 -0.04 -25.14 16 7 C 0.11 1.77 4.31 85.63 0.37 2.14 16 8 N -0.99 -18.76 2.61 -543.23 -1.42 -20.18 16 9 C 0.09 1.58 10.22 127.77 1.31 2.89 16 10 S 2.59 55.48 5.96 -56.49 -0.34 55.14 16 11 C -0.63 -3.28 10.99 113.37 1.25 -2.03 16 12 O -1.01 -31.52 17.09 -127.65 -2.18 -33.70 16 13 O -1.00 -30.58 16.99 -127.65 -2.17 -32.75 16 14 C 0.15 5.78 3.55 46.38 0.16 5.94 16 15 H 0.11 3.69 7.86 -2.39 -0.02 3.67 16 16 C -0.14 -6.28 6.33 31.78 0.20 -6.08 16 17 C 0.20 11.40 5.37 86.73 0.47 11.87 16 18 N -0.62 -36.47 3.39 -692.02 -2.35 -38.82 16 19 C -0.24 -14.97 10.28 84.03 0.86 -14.10 16 20 H 0.08 4.83 7.83 -2.91 -0.02 4.81 16 21 C -0.07 -4.42 5.49 84.86 0.47 -3.95 16 22 N -0.95 -62.67 10.31 21.65 0.22 -62.45 16 23 Si 0.99 49.21 29.55 68.60 2.03 51.23 16 24 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 27 C 0.12 5.81 6.58 86.86 0.57 6.38 16 28 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.97 7.22 -2.39 -0.02 0.95 16 33 H 0.12 0.71 6.44 -2.39 -0.02 0.70 16 34 H 0.09 1.21 7.93 -2.39 -0.02 1.19 16 35 H 0.14 1.42 6.65 -2.39 -0.02 1.40 16 36 H 0.16 0.90 7.22 -2.39 -0.02 0.88 16 37 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.09 1.11 7.79 -2.38 -0.02 1.09 16 39 H 0.11 0.99 7.94 -2.39 -0.02 0.97 16 40 H 0.16 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.16 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.05 2.56 6.25 -2.39 -0.01 2.55 16 45 H 0.02 1.17 7.38 -2.39 -0.02 1.15 16 46 H -0.01 -0.82 7.51 -2.39 -0.02 -0.83 16 47 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 48 H 0.03 1.54 5.53 -2.39 -0.01 1.53 16 49 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -103.81 397.07 0.29 -103.52 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 0.93 Total: 3.95 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 7.62 Total: 17.68 kcal Atomic # 7 Polarization: -134.37 SS G_CDS: -5.57 Total: -139.94 kcal Atomic # 8 Polarization: -87.20 SS G_CDS: -4.39 Total: -91.59 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.03 Total: 51.23 kcal Atomic # 16 Polarization: 55.48 SS G_CDS: -0.34 Total: 55.14 kcal Total: -103.81 0.29 -103.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664668436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.860 kcal (2) G-P(sol) polarization free energy of solvation -103.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds