Wall clock time and date at job start Wed Apr 1 2020 05:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47196 * 2 1 4 4 N 1.46494 * 109.46725 * 120.00276 * 2 1 3 5 5 C 1.34779 * 120.00299 * 274.99237 * 4 2 1 6 6 O 1.21285 * 119.99644 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00540 * 180.02562 * 5 4 2 8 8 S 1.81404 * 109.47212 * 180.02562 * 7 5 4 9 9 O 1.42100 * 110.53727 * 68.37855 * 8 7 5 10 10 O 1.42092 * 110.54198 * 291.62740 * 8 7 5 11 11 N 1.65598 * 104.44705 * 179.97438 * 8 7 5 12 12 C 1.46503 * 119.99750 * 90.00228 * 11 8 7 13 13 C 1.46496 * 120.00203 * 270.00359 * 11 8 7 14 14 C 1.53000 * 109.46870 * 240.00020 * 2 1 3 15 15 H 1.09003 * 109.49928 * 300.06876 * 14 2 1 16 16 C 1.53038 * 109.49906 * 60.16222 * 14 2 1 17 17 C 1.53042 * 109.53865 * 181.31611 * 16 14 2 18 18 C 1.53193 * 109.31311 * 298.63581 * 17 16 14 19 19 N 1.46927 * 108.77288 * 54.63060 * 18 17 16 20 20 C 1.36943 * 120.62361 * 126.36907 * 19 18 17 21 21 H 1.07994 * 120.00260 * 331.84310 * 20 19 18 22 22 C 1.38813 * 119.99456 * 151.84398 * 20 19 18 23 23 N 1.31614 * 120.00443 * 343.07943 * 22 20 19 24 24 Si 1.86803 * 119.99528 * 163.07979 * 22 20 19 25 25 H 1.48501 * 109.47331 * 60.00375 * 24 22 20 26 26 H 1.48510 * 109.46860 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47140 * 300.00078 * 24 22 20 28 28 C 1.46921 * 118.74628 * 306.39402 * 19 18 17 29 29 H 1.09002 * 109.47306 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47222 * 299.99956 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99843 * 1 2 3 32 32 H 0.97007 * 120.00109 * 95.00184 * 4 2 1 33 33 H 1.09003 * 109.46639 * 60.00361 * 7 5 4 34 34 H 1.08997 * 109.47022 * 300.00679 * 7 5 4 35 35 H 1.09000 * 109.47051 * 89.99604 * 12 11 8 36 36 H 1.09000 * 109.47267 * 209.99780 * 12 11 8 37 37 H 1.08999 * 109.46983 * 330.00122 * 12 11 8 38 38 H 1.08995 * 109.47472 * 89.99938 * 13 11 8 39 39 H 1.09005 * 109.46861 * 210.00282 * 13 11 8 40 40 H 1.08997 * 109.46918 * 329.99800 * 13 11 8 41 41 H 1.08998 * 109.46068 * 301.33932 * 16 14 2 42 42 H 1.09001 * 109.46061 * 61.29506 * 16 14 2 43 43 H 1.09001 * 109.49635 * 178.68584 * 17 16 14 44 44 H 1.08993 * 109.52228 * 58.60442 * 17 16 14 45 45 H 1.09002 * 109.58327 * 294.85226 * 18 17 16 46 46 H 1.08997 * 109.70601 * 174.49385 * 18 17 16 47 47 H 0.97002 * 120.00092 * 180.02562 * 23 22 20 48 48 H 1.09005 * 109.58428 * 293.82113 * 28 19 18 49 49 H 1.08993 * 109.59068 * 173.39330 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8584 1.1583 2.4117 7 6 2.6499 -0.7287 3.5875 8 16 2.7102 0.4368 4.9763 9 8 1.3973 0.8140 5.3679 10 8 3.7205 1.4131 4.7644 11 7 3.2719 -0.4639 6.2473 12 6 4.7120 -0.5555 6.5004 13 6 2.3288 -1.1692 7.1187 14 6 2.0400 -0.7213 -1.2493 15 1 1.6759 -1.7487 -1.2503 16 6 1.5335 0.0020 -2.4992 17 6 2.0158 -0.7375 -3.7493 18 6 3.5475 -0.7381 -3.7782 19 7 4.0441 -1.3005 -2.5150 20 6 4.9299 -2.3449 -2.5168 21 1 4.9346 -3.0476 -3.3369 22 6 5.8218 -2.5001 -1.4646 23 7 6.0562 -1.4959 -0.6468 24 14 6.6895 -4.1346 -1.2093 25 1 7.4950 -4.4609 -2.4134 26 1 7.5833 -4.0412 -0.0269 27 1 5.6806 -5.2008 -0.9848 28 6 3.5719 -0.7217 -1.2498 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2490 -1.6319 1.1525 33 1 3.6492 -1.1205 3.3978 34 1 1.9776 -1.5509 3.8325 35 1 5.0146 0.2476 7.1723 36 1 4.9399 -1.5179 6.9585 37 1 5.2529 -0.4642 5.5585 38 1 2.1494 -2.1698 6.7256 39 1 2.7470 -1.2427 8.1227 40 1 1.3882 -0.6196 7.1563 41 1 0.4438 0.0253 -2.4888 42 1 1.9182 1.0219 -2.5096 43 1 1.6353 -0.2352 -4.6386 44 1 1.6519 -1.7647 -3.7279 45 1 3.9111 0.2832 -3.8914 46 1 3.8991 -1.3457 -4.6121 47 1 6.6798 -1.6043 0.0883 48 1 3.9376 0.3009 -1.1569 49 1 3.9374 -1.3199 -0.4153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690505552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:01 Heat of formation + Delta-G solvation = -114.144603 kcal Electronic energy + Delta-G solvation = -30322.645796 eV Core-core repulsion = 26218.460192 eV Total energy + Delta-G solvation = -4104.185605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.24797 -39.49340 -38.35706 -37.29900 -36.95977 -36.70379 -34.88401 -33.27962 -31.81903 -31.00566 -29.89231 -28.95844 -27.10266 -25.63839 -24.94389 -23.71668 -22.43318 -21.65723 -20.71743 -19.96866 -19.03717 -18.72263 -18.13771 -17.78917 -17.53534 -16.88679 -16.75028 -16.41921 -15.84821 -15.49808 -15.36110 -15.32863 -15.03870 -14.97548 -14.68863 -14.23097 -14.09155 -14.04225 -13.90346 -13.69046 -13.54602 -13.38176 -13.29678 -13.24558 -12.94893 -12.77808 -12.61356 -12.59587 -12.54877 -12.37050 -12.20334 -12.16132 -11.99154 -11.72347 -11.54781 -11.51168 -11.15548 -11.04948 -10.54499 -10.20263 -10.06092 -8.66018 -7.85215 -5.32372 -0.99378 1.26931 1.48345 1.49506 1.57013 1.57621 2.01158 2.52110 2.76832 3.04626 3.25524 3.31814 3.55610 3.81935 3.85880 3.95198 4.05148 4.10838 4.18817 4.28341 4.41043 4.47939 4.48488 4.55620 4.65499 4.75312 4.78104 4.84717 4.86483 4.95699 4.97733 4.99212 5.03809 5.04827 5.14637 5.19019 5.24208 5.34501 5.45215 5.46525 5.53723 5.56329 5.67411 5.78060 6.25427 6.40134 6.92627 7.15985 7.86747 8.39933 9.20110 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010836 B = 0.003637 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.371857 B = 7697.717582 C = 9646.487622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.060 0.940 4 N -0.694 5.694 5 C 0.533 3.467 6 O -0.588 6.588 7 C -0.663 4.663 8 S 2.646 3.354 9 O -0.975 6.975 10 O -0.985 6.985 11 N -1.004 6.004 12 C 0.080 3.920 13 C 0.069 3.931 14 C -0.104 4.104 15 H 0.078 0.922 16 C -0.101 4.101 17 C -0.121 4.121 18 C 0.134 3.866 19 N -0.611 5.611 20 C -0.267 4.267 21 H 0.065 0.935 22 C -0.044 4.044 23 N -0.933 5.933 24 Si 0.965 3.035 25 H -0.282 1.282 26 H -0.293 1.293 27 H -0.272 1.272 28 C 0.188 3.812 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.416 0.584 33 H 0.183 0.817 34 H 0.204 0.796 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.004 0.996 46 H 0.051 0.949 47 H 0.250 0.750 48 H -0.025 1.025 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.439 -5.221 11.703 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.041 3.959 3 H 0.078 0.922 4 N -0.343 5.343 5 C 0.318 3.682 6 O -0.470 6.470 7 C -0.792 4.792 8 S 2.737 3.263 9 O -0.964 6.964 10 O -0.975 6.975 11 N -0.845 5.845 12 C -0.065 4.065 13 C -0.075 4.075 14 C -0.125 4.125 15 H 0.097 0.903 16 C -0.139 4.139 17 C -0.159 4.159 18 C 0.008 3.992 19 N -0.334 5.334 20 C -0.397 4.397 21 H 0.083 0.917 22 C -0.240 4.240 23 N -0.579 5.579 24 Si 0.792 3.208 25 H -0.209 1.209 26 H -0.219 1.219 27 H -0.198 1.198 28 C 0.062 3.938 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.252 0.748 33 H 0.200 0.800 34 H 0.221 0.779 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.022 0.978 46 H 0.070 0.930 47 H 0.059 0.941 48 H -0.007 1.007 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.734 -3.526 11.867 16.385 hybrid contribution 1.410 -1.376 -0.230 1.983 sum -9.324 -4.902 11.637 15.697 Atomic orbital electron populations 1.22152 0.92880 1.03315 1.02776 1.21076 0.95360 0.96152 0.83306 0.92172 1.45912 1.64892 1.14792 1.08737 1.19704 0.77064 0.86284 0.85152 1.90804 1.53279 1.17159 1.85756 1.31061 1.14766 1.20521 1.12840 1.03813 0.72985 0.74797 0.74710 1.93504 1.40849 1.81143 1.80953 1.93534 1.60494 1.57280 1.86212 1.57253 1.15117 1.68904 1.43260 1.21779 0.77377 1.04493 1.02825 1.21945 0.92410 0.97318 0.95830 1.21936 0.97304 0.99689 0.93558 0.90320 1.21481 1.01023 0.98108 0.93324 1.21864 0.95462 1.00647 0.97965 1.21132 0.94126 0.95320 0.88582 1.44332 1.50136 1.37877 1.01037 1.19486 1.10745 1.02231 1.07200 0.91739 1.25754 0.97942 1.00252 1.00043 1.70216 1.37633 1.30672 1.19369 0.85400 0.78148 0.80258 0.76951 1.20863 1.21928 1.19765 1.20583 0.89688 0.94170 0.89356 0.90614 0.93335 0.89537 0.74755 0.79970 0.77921 0.92237 0.87409 0.91273 0.89828 0.88256 0.90868 0.89282 0.93465 0.89977 0.92000 0.97824 0.92999 0.94055 1.00655 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.14 71.98 0.66 -3.12 16 2 C 0.15 4.61 2.16 44.99 0.10 4.70 16 3 H 0.06 2.26 7.58 -2.39 -0.02 2.24 16 4 N -0.69 -20.88 4.47 -442.54 -1.98 -22.86 16 5 C 0.53 17.29 7.81 87.66 0.68 17.97 16 6 O -0.59 -24.07 15.53 -3.05 -0.05 -24.11 16 7 C -0.66 -14.63 6.66 71.24 0.47 -14.15 16 8 S 2.65 73.14 4.51 -56.49 -0.25 72.88 16 9 O -0.97 -32.05 16.57 -127.64 -2.12 -34.17 16 10 O -0.99 -36.37 17.09 -127.64 -2.18 -38.56 16 11 N -1.00 -18.03 3.52 -562.70 -1.98 -20.00 16 12 C 0.08 1.19 10.20 127.77 1.30 2.49 16 13 C 0.07 0.81 10.64 127.77 1.36 2.17 16 14 C -0.10 -3.52 1.97 -10.72 -0.02 -3.54 16 15 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 16 C -0.10 -3.01 4.86 30.62 0.15 -2.86 16 17 C -0.12 -3.70 6.08 30.67 0.19 -3.51 16 18 C 0.13 5.45 6.52 86.36 0.56 6.01 16 19 N -0.61 -29.76 2.99 -699.10 -2.09 -31.86 16 20 C -0.27 -14.14 9.58 84.03 0.81 -13.33 16 21 H 0.06 3.35 7.88 -2.91 -0.02 3.32 16 22 C -0.04 -2.35 4.92 84.86 0.42 -1.94 16 23 N -0.93 -53.01 11.20 21.65 0.24 -52.76 16 24 Si 0.96 42.23 29.59 68.60 2.03 44.26 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 C 0.19 8.63 4.34 86.36 0.37 9.00 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.84 6.41 -2.39 -0.02 1.83 16 32 H 0.42 10.76 8.42 -92.70 -0.78 9.98 16 33 H 0.18 3.31 8.14 -2.39 -0.02 3.30 16 34 H 0.20 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.11 0.86 8.07 -2.39 -0.02 0.84 16 37 H 0.07 1.12 7.79 -2.39 -0.02 1.10 16 38 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.10 0.74 8.07 -2.38 -0.02 0.72 16 40 H 0.07 1.07 6.91 -2.39 -0.02 1.05 16 41 H 0.09 2.04 6.36 -2.39 -0.02 2.03 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 47 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 48 H -0.02 -1.31 8.14 -2.38 -0.02 -1.33 16 49 H 0.07 3.35 5.56 -2.39 -0.01 3.34 16 Total: -1.00 -82.25 398.67 -1.17 -83.41 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.16 Total: 23.86 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 7.05 Total: -0.10 kcal Atomic # 7 Polarization: -121.67 SS G_CDS: -5.81 Total: -127.48 kcal Atomic # 8 Polarization: -92.49 SS G_CDS: -4.34 Total: -96.84 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 73.14 SS G_CDS: -0.25 Total: 72.88 kcal Total: -82.25 -1.17 -83.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690505552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.730 kcal (2) G-P(sol) polarization free energy of solvation -82.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds