Wall clock time and date at job start Wed Apr 1 2020 05:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47012 * 2 1 4 4 N 1.46501 * 109.47270 * 119.99919 * 2 1 3 5 5 C 1.34773 * 119.99992 * 275.00416 * 4 2 1 6 6 O 1.21288 * 120.00206 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00225 * 179.97438 * 5 4 2 8 8 S 1.81394 * 109.47347 * 179.97438 * 7 5 4 9 9 O 1.42100 * 110.54317 * 291.62825 * 8 7 5 10 10 O 1.42105 * 110.54365 * 68.37935 * 8 7 5 11 11 N 1.65598 * 104.45176 * 180.02562 * 8 7 5 12 12 C 1.46502 * 119.99994 * 89.99948 * 11 8 7 13 13 C 1.46501 * 120.00073 * 270.00388 * 11 8 7 14 14 C 1.53003 * 109.47306 * 239.99912 * 2 1 3 15 15 H 1.09000 * 109.49773 * 185.06219 * 14 2 1 16 16 C 1.53044 * 109.49398 * 65.00162 * 14 2 1 17 17 C 1.53041 * 109.53619 * 178.68422 * 16 14 2 18 18 C 1.53197 * 109.31452 * 61.36176 * 17 16 14 19 19 N 1.46929 * 108.77347 * 305.36997 * 18 17 16 20 20 C 1.36943 * 120.62516 * 233.58268 * 19 18 17 21 21 H 1.08001 * 119.99968 * 151.83400 * 20 19 18 22 22 C 1.38809 * 120.00166 * 331.83584 * 20 19 18 23 23 N 1.31618 * 120.00112 * 343.07729 * 22 20 19 24 24 Si 1.86802 * 119.99866 * 163.08299 * 22 20 19 25 25 H 1.48495 * 109.47080 * 89.99679 * 24 22 20 26 26 H 1.48505 * 109.46946 * 209.99542 * 24 22 20 27 27 H 1.48496 * 109.46977 * 329.99516 * 24 22 20 28 28 C 1.46925 * 118.74324 * 53.60441 * 19 18 17 29 29 H 1.08999 * 109.47549 * 300.00106 * 1 2 3 30 30 H 1.09000 * 109.46809 * 60.00170 * 1 2 3 31 31 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 32 32 H 0.97002 * 119.99713 * 94.99855 * 4 2 1 33 33 H 1.09000 * 109.46532 * 59.99701 * 7 5 4 34 34 H 1.08994 * 109.47066 * 300.00039 * 7 5 4 35 35 H 1.08999 * 109.47202 * 90.00093 * 12 11 8 36 36 H 1.08997 * 109.47187 * 210.00531 * 12 11 8 37 37 H 1.09004 * 109.46916 * 330.00083 * 12 11 8 38 38 H 1.08997 * 109.46787 * 89.99443 * 13 11 8 39 39 H 1.08999 * 109.46977 * 209.99819 * 13 11 8 40 40 H 1.08992 * 109.46781 * 329.99397 * 13 11 8 41 41 H 1.09000 * 109.46092 * 298.70228 * 16 14 2 42 42 H 1.09001 * 109.46058 * 58.67862 * 16 14 2 43 43 H 1.08991 * 109.49889 * 181.31378 * 17 16 14 44 44 H 1.09003 * 109.49455 * 301.38310 * 17 16 14 45 45 H 1.08996 * 109.58400 * 65.15144 * 18 17 16 46 46 H 1.09001 * 109.59013 * 185.58083 * 18 17 16 47 47 H 0.96999 * 119.99809 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.58694 * 186.60458 * 28 19 18 49 49 H 1.09004 * 109.58177 * 66.17824 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8589 1.1587 2.4115 7 6 2.6488 -0.7287 3.5878 8 16 2.7106 0.4370 4.9761 9 8 3.7223 1.4121 4.7639 10 8 1.3983 0.8162 5.3677 11 7 3.2724 -0.4635 6.2473 12 6 4.7126 -0.5559 6.4996 13 6 2.3293 -1.1679 7.1194 14 6 2.0400 -0.7213 -1.2492 15 1 3.1263 -0.8007 -1.2055 16 6 1.6355 0.0687 -2.4960 17 6 2.1734 -0.6346 -3.7444 18 6 1.5613 -2.0357 -3.8399 19 7 1.8220 -2.7522 -2.5840 20 6 2.4218 -3.9833 -2.5947 21 1 3.0108 -4.3044 -1.7483 22 6 2.2730 -4.8183 -3.6935 23 7 1.3126 -4.5943 -4.5651 24 14 3.4358 -6.2602 -3.9350 25 1 2.8820 -7.4612 -3.2598 26 1 3.5890 -6.5348 -5.3864 27 1 4.7608 -5.9308 -3.3510 28 6 1.4264 -2.1233 -1.3165 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.2490 -1.6318 1.1526 33 1 3.6480 -1.1212 3.3986 34 1 1.9760 -1.5505 3.8326 35 1 5.0161 0.2473 7.1711 36 1 4.9402 -1.5182 6.9579 37 1 5.2531 -0.4653 5.5573 38 1 2.1492 -2.1685 6.7266 39 1 2.7480 -1.2413 8.1231 40 1 1.3892 -0.6177 7.1573 41 1 0.5485 0.1271 -2.5521 42 1 2.0508 1.0749 -2.4390 43 1 1.9049 -0.0591 -4.6302 44 1 3.2584 -0.7149 -3.6776 45 1 0.4859 -1.9546 -3.9979 46 1 2.0149 -2.5768 -4.6703 47 1 1.2084 -5.1781 -5.3327 48 1 1.7911 -2.7222 -0.4819 49 1 0.3400 -2.0493 -1.2687 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690505555.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:12 Heat of formation + Delta-G solvation = -84.366054 kcal Electronic energy + Delta-G solvation = -29717.868478 eV Core-core repulsion = 25614.974168 eV Total energy + Delta-G solvation = -4102.894310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.18876 -38.19103 -37.37963 -36.62379 -36.05600 -35.36150 -33.21182 -31.76498 -30.52200 -29.94374 -28.52390 -28.08041 -25.37220 -25.09192 -24.01600 -22.31613 -21.18912 -20.36137 -19.23033 -18.71739 -18.20842 -17.31245 -16.86156 -16.73320 -16.62596 -15.78232 -15.52667 -14.97194 -14.80252 -14.70517 -14.48102 -14.15357 -13.85963 -13.54156 -13.36458 -13.32720 -13.07581 -12.98755 -12.71204 -12.50527 -12.45652 -12.33627 -12.26046 -11.93343 -11.88278 -11.86136 -11.70762 -11.37593 -11.06766 -10.97612 -10.65435 -10.55525 -10.42689 -10.26668 -10.12414 -9.93872 -9.70081 -9.51841 -9.46027 -9.14452 -8.52940 -6.72926 -5.86028 -3.29139 -0.16137 2.25448 2.31688 2.90372 3.30694 3.38581 3.39936 3.61601 3.83194 4.14295 4.39422 4.41722 4.48633 4.80186 4.89032 4.94797 4.95923 5.14620 5.15033 5.32451 5.34716 5.36194 5.38786 5.48915 5.50711 5.62535 5.64244 5.79455 5.93144 6.03571 6.05337 6.15295 6.19195 6.25609 6.39143 6.48999 6.52659 6.64689 6.70608 6.81326 6.90537 7.25582 7.34712 7.61356 7.71221 7.89128 8.37515 9.13628 9.77189 10.34013 11.22148 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014816 B = 0.002552 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.361738 B =10967.545626 C =12190.797279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.144 3.856 3 H 0.087 0.913 4 N -0.704 5.704 5 C 0.542 3.458 6 O -0.542 6.542 7 C -0.677 4.677 8 S 2.645 3.355 9 O -0.936 6.936 10 O -0.937 6.937 11 N -1.012 6.012 12 C 0.091 3.909 13 C 0.079 3.921 14 C -0.114 4.114 15 H 0.073 0.927 16 C -0.101 4.101 17 C -0.142 4.142 18 C 0.170 3.830 19 N -0.591 5.591 20 C -0.256 4.256 21 H 0.063 0.937 22 C 0.004 3.996 23 N -0.900 5.900 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.150 3.850 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.407 0.593 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.018 0.982 46 H 0.086 0.914 47 H 0.254 0.746 48 H 0.046 0.954 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 5.796 19.290 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.040 3.960 3 H 0.105 0.895 4 N -0.354 5.354 5 C 0.325 3.675 6 O -0.421 6.421 7 C -0.805 4.805 8 S 2.732 3.268 9 O -0.926 6.926 10 O -0.927 6.927 11 N -0.851 5.851 12 C -0.055 4.055 13 C -0.067 4.067 14 C -0.135 4.135 15 H 0.092 0.908 16 C -0.139 4.139 17 C -0.182 4.182 18 C 0.044 3.956 19 N -0.313 5.313 20 C -0.386 4.386 21 H 0.081 0.919 22 C -0.195 4.195 23 N -0.544 5.544 24 Si 0.731 3.269 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.024 3.976 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.243 0.757 33 H 0.177 0.823 34 H 0.178 0.822 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.036 0.964 46 H 0.104 0.896 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.103 7.372 19.170 20.772 hybrid contribution 0.869 -2.214 -0.509 2.433 sum 3.972 5.158 18.661 19.764 Atomic orbital electron populations 1.22285 0.94987 1.02969 1.02329 1.21209 0.94572 0.97011 0.83175 0.89491 1.46088 1.65505 1.14535 1.09282 1.19106 0.77876 0.86620 0.83887 1.90842 1.51169 1.15245 1.84816 1.31184 1.12371 1.20629 1.16290 1.04307 0.74287 0.74294 0.73865 1.93590 1.59420 1.54324 1.85308 1.93574 1.39473 1.79697 1.80003 1.57566 1.14069 1.69160 1.44332 1.21529 0.78570 1.02754 1.02604 1.21666 0.93373 0.96632 0.94984 1.21980 1.00993 0.98103 0.92390 0.90844 1.21424 1.00615 0.97258 0.94578 1.22180 1.00608 0.99569 0.95800 1.20796 0.96636 0.88015 0.90157 1.44015 1.69915 1.17473 0.99908 1.19120 1.23599 0.92071 1.03774 0.91894 1.25040 0.97353 0.97644 0.99443 1.70030 1.30194 1.39477 1.14729 0.86327 0.80926 0.82474 0.77197 1.21396 1.21512 1.20516 1.21003 0.96258 0.90271 0.90092 0.92598 0.91037 0.91405 0.75726 0.82309 0.82238 0.91989 0.90779 0.90888 0.92533 0.90404 0.89523 0.92135 0.93402 0.93135 0.92792 0.96393 0.89597 0.93566 0.93562 0.95535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 8.76 37.16 0.33 -1.97 16 2 C 0.14 2.04 2.35 -67.93 -0.16 1.88 16 3 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 4 N -0.70 -8.89 5.01 -53.80 -0.27 -9.16 16 5 C 0.54 7.22 7.81 -10.98 -0.09 7.13 16 6 O -0.54 -9.28 15.53 5.55 0.09 -9.19 16 7 C -0.68 -5.89 6.66 36.01 0.24 -5.65 16 8 S 2.64 29.71 4.51 -107.50 -0.49 29.23 16 9 O -0.94 -13.63 17.09 -57.55 -0.98 -14.61 16 10 O -0.94 -13.48 16.58 -57.55 -0.95 -14.43 16 11 N -1.01 -7.55 3.52 -129.21 -0.45 -8.00 16 12 C 0.09 0.51 10.20 59.85 0.61 1.12 16 13 C 0.08 0.43 10.64 59.85 0.64 1.07 16 14 C -0.11 -1.81 2.27 -90.50 -0.21 -2.01 16 15 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.10 -1.61 4.89 -26.69 -0.13 -1.74 16 17 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 18 C 0.17 3.89 5.30 -3.71 -0.02 3.87 16 19 N -0.59 -13.94 2.99 -172.32 -0.52 -14.46 16 20 C -0.26 -6.68 9.58 -15.06 -0.14 -6.83 16 21 H 0.06 1.59 7.88 -52.49 -0.41 1.18 16 22 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 23 N -0.90 -25.37 11.20 55.49 0.62 -24.75 16 24 Si 0.90 20.90 29.59 -169.99 -5.03 15.87 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.15 2.83 5.26 -3.71 -0.02 2.81 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.94 6.60 -51.93 -0.34 0.59 16 31 H 0.07 0.94 6.23 -51.93 -0.32 0.61 16 32 H 0.41 4.41 7.28 -40.82 -0.30 4.12 16 33 H 0.16 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.16 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 37 H 0.07 0.37 7.79 -51.93 -0.40 -0.04 16 38 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 40 H 0.09 0.57 6.91 -51.93 -0.36 0.21 16 41 H 0.06 0.95 6.63 -51.93 -0.34 0.61 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 47 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.05 0.82 6.75 -51.93 -0.35 0.47 16 49 H 0.03 0.52 6.06 -51.93 -0.31 0.20 16 LS Contribution 393.70 15.07 5.93 5.93 Total: -1.00 -35.79 393.70 -9.31 -45.10 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.06 Total: 1.55 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 0.80 Total: -3.06 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.62 Total: -56.37 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -1.85 Total: -38.24 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Atomic # 16 Polarization: 29.71 SS G_CDS: -0.49 Total: 29.23 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.79 -9.31 -45.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690505555.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.267 kcal (2) G-P(sol) polarization free energy of solvation -35.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds