Wall clock time and date at job start Wed Apr 1 2020 04:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 N 1.46496 * 109.47202 * 180.02562 * 3 2 1 5 5 C 1.36943 * 120.00211 * 270.00190 * 4 3 2 6 6 H 1.07999 * 119.99753 * 38.12326 * 5 4 3 7 7 C 1.38808 * 120.00456 * 218.13401 * 5 4 3 8 8 N 1.31624 * 119.99814 * 21.28127 * 7 5 4 9 9 Si 1.86800 * 120.00286 * 201.28486 * 7 5 4 10 10 H 1.48504 * 109.46789 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47017 * 119.99748 * 9 7 5 12 12 H 1.48501 * 109.47147 * 239.99622 * 9 7 5 13 13 C 1.46499 * 120.00396 * 90.00240 * 4 3 2 14 14 C 1.53003 * 109.47018 * 264.50183 * 13 4 3 15 15 N 1.46500 * 109.47280 * 179.97438 * 14 13 4 16 16 C 1.34778 * 119.99953 * 179.97438 * 15 14 13 17 17 O 1.21279 * 120.00246 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99602 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.46602 * 180.02562 * 18 16 15 20 20 C 1.53002 * 108.58318 * 61.54327 * 19 18 16 21 21 C 1.53260 * 108.52648 * 179.41388 * 19 18 16 22 22 C 1.55569 * 106.21133 * 148.50562 * 21 19 18 23 23 S 1.83895 * 99.69005 * 323.08592 * 22 21 19 24 24 O 1.42101 * 111.46841 * 144.05776 * 23 22 21 25 25 O 1.42095 * 111.46449 * 284.11615 * 23 22 21 26 26 N 1.46455 * 108.64915 * 303.54703 * 19 18 16 27 27 H 1.09005 * 109.46828 * 59.99649 * 1 2 3 28 28 H 1.08996 * 109.47251 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46586 * 300.00004 * 1 2 3 30 30 H 1.09003 * 109.47191 * 240.00398 * 2 1 3 31 31 H 1.09002 * 109.47260 * 120.00609 * 2 1 3 32 32 H 1.08999 * 109.47323 * 60.00447 * 3 2 1 33 33 H 1.09005 * 109.47485 * 299.99948 * 3 2 1 34 34 H 0.97002 * 119.99744 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47723 * 144.50195 * 13 4 3 36 36 H 1.09001 * 109.47316 * 24.49985 * 13 4 3 37 37 H 1.08999 * 109.47190 * 59.99853 * 14 13 4 38 38 H 1.09000 * 109.47182 * 299.99571 * 14 13 4 39 39 H 0.96996 * 120.00176 * 0.02562 * 15 14 13 40 40 H 1.08999 * 109.47050 * 60.00200 * 18 16 15 41 41 H 1.09000 * 109.47092 * 300.00059 * 18 16 15 42 42 H 1.09000 * 109.47207 * 303.45467 * 20 19 18 43 43 H 1.08996 * 109.47195 * 63.45778 * 20 19 18 44 44 H 1.09002 * 109.46932 * 183.45246 * 20 19 18 45 45 H 1.09004 * 110.07507 * 29.34787 * 21 19 18 46 46 H 1.08992 * 110.15484 * 267.71828 * 21 19 18 47 47 H 1.08999 * 111.36897 * 205.45047 * 22 21 19 48 48 H 1.09004 * 111.36352 * 80.71260 * 22 21 19 49 49 H 0.96998 * 126.08310 * 57.30781 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1903 1.4422 1.1850 6 1 3.8234 0.8647 2.0206 7 6 5.3562 2.1845 1.3130 8 7 5.5893 3.1899 0.4962 9 14 6.5946 1.7564 2.6444 10 1 6.1004 0.5935 3.4246 11 1 7.8969 1.4151 2.0177 12 1 6.7707 2.9204 3.5494 13 6 4.2370 1.4427 -1.2696 14 6 4.6116 0.0069 -1.6426 15 7 5.3431 0.0070 -2.9118 16 6 5.7770 -1.1548 -3.4396 17 8 5.5615 -2.2003 -2.8641 18 6 6.5290 -1.1546 -4.7457 19 6 6.9037 -2.5904 -5.1185 20 6 5.6173 -3.3998 -5.2949 21 6 7.6534 -2.5667 -6.4550 22 6 8.6626 -3.7497 -6.4079 23 16 9.1498 -3.6706 -4.6364 24 8 9.3659 -4.9678 -4.0980 25 8 10.0445 -2.5945 -4.3908 26 7 7.6764 -3.1733 -4.0194 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 6.4042 3.7084 0.5854 35 1 5.1434 2.0394 -1.1662 36 1 3.6086 1.8690 -2.0515 37 1 3.7053 -0.5899 -1.7460 38 1 5.2401 -0.4195 -0.8607 39 1 5.5158 0.8432 -3.3720 40 1 7.4350 -0.5573 -4.6432 41 1 5.8997 -0.7291 -5.5273 42 1 5.0240 -3.3427 -4.3823 43 1 5.0434 -2.9930 -6.1275 44 1 5.8681 -4.4404 -5.5008 45 1 8.1873 -1.6232 -6.5678 46 1 6.9544 -2.7031 -7.2801 47 1 9.5153 -3.5706 -7.0628 48 1 8.1763 -4.6962 -6.6442 49 1 7.3860 -3.2556 -3.0976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691196262.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:32 Heat of formation + Delta-G solvation = -89.188696 kcal Electronic energy + Delta-G solvation = -29798.056097 eV Core-core repulsion = 25694.952661 eV Total energy + Delta-G solvation = -4103.103435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.19509 -37.94836 -37.14137 -36.44484 -35.98689 -34.27177 -32.91613 -32.00247 -31.12884 -30.61015 -28.78585 -27.23964 -25.59249 -24.70069 -23.32290 -21.23398 -20.73160 -20.34944 -19.88254 -19.67067 -17.65999 -17.05896 -16.73660 -16.34256 -16.02988 -15.66207 -15.39699 -14.99065 -14.91398 -14.52330 -14.37037 -13.88960 -13.76310 -13.60683 -13.52142 -13.08517 -12.97632 -12.77371 -12.73202 -12.44129 -12.23878 -12.11635 -12.00368 -11.72198 -11.61985 -11.52956 -11.40301 -11.21026 -11.06481 -10.96900 -10.78565 -10.76228 -10.44750 -10.37724 -10.09027 -9.90397 -9.76398 -9.54760 -9.41360 -8.58978 -8.48784 -6.64616 -5.84702 -3.46296 0.08268 2.46385 2.88043 3.32761 3.37349 3.43624 3.46415 3.50241 3.66380 3.99141 4.20063 4.35980 4.45167 4.64974 4.86171 4.92073 5.05602 5.17481 5.23631 5.26167 5.31916 5.40539 5.45252 5.52801 5.62484 5.72184 5.75008 5.92227 5.98867 6.08760 6.19074 6.25419 6.33045 6.38406 6.50787 6.58394 6.63004 6.83932 6.93706 6.99606 7.13332 7.24502 7.51963 7.78688 7.88035 8.45303 8.54216 9.11992 9.73604 10.31245 11.13546 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.002935 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.915009 B = 9536.606416 C =10913.654330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.262 4.262 6 H 0.061 0.939 7 C 0.015 3.985 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.135 3.865 14 C 0.099 3.901 15 N -0.719 5.719 16 C 0.512 3.488 17 O -0.544 6.544 18 C -0.151 4.151 19 C 0.159 3.841 20 C -0.169 4.169 21 C -0.117 4.117 22 C -0.593 4.593 23 S 2.564 3.436 24 O -0.963 6.963 25 O -0.954 6.954 26 N -1.076 6.076 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.031 0.969 34 H 0.255 0.745 35 H 0.097 0.903 36 H 0.028 0.972 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.397 0.603 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.849 -9.226 -18.807 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.392 4.392 6 H 0.079 0.921 7 C -0.185 4.185 8 N -0.528 5.528 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.216 1.216 13 C 0.008 3.992 14 C -0.027 4.027 15 N -0.368 5.368 16 C 0.298 3.702 17 O -0.423 6.423 18 C -0.193 4.193 19 C 0.068 3.932 20 C -0.227 4.227 21 C -0.156 4.156 22 C -0.724 4.724 23 S 2.658 3.342 24 O -0.953 6.953 25 O -0.943 6.943 26 N -0.847 5.847 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.115 0.885 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.230 0.770 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.117 0.883 46 H 0.131 0.869 47 H 0.157 0.843 48 H 0.159 0.841 49 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 1.717 -9.997 -17.882 20.559 hybrid contribution 0.180 0.261 0.269 0.416 sum 1.896 -9.737 -17.613 20.214 Atomic orbital electron populations 1.21722 0.97329 1.00392 1.01024 1.22197 0.93827 1.00984 1.01465 1.20947 0.85077 0.92851 0.98977 1.43604 0.99392 1.85110 1.01828 1.19046 1.06074 1.22698 0.91341 0.92087 1.25180 1.00799 0.94596 0.97930 1.69978 1.25927 1.17129 1.39798 0.86362 0.81560 0.78116 0.81579 1.19954 1.21319 1.21559 1.21075 0.99539 0.91838 0.86797 1.22412 0.94907 1.02347 0.82990 1.46173 1.56963 1.08534 1.25163 1.20364 0.79077 0.84125 0.86617 1.90550 1.57876 1.31181 1.62715 1.22223 1.02298 0.97865 0.96948 1.20245 0.94050 0.93120 0.85793 1.22517 0.96579 0.99326 1.04285 1.22543 0.98236 0.97671 0.97184 1.30773 1.09653 1.07080 1.24872 1.06544 0.74307 0.74857 0.78518 1.93608 1.84996 1.40645 1.76005 1.93662 1.62978 1.54856 1.82840 1.55124 1.34238 1.77680 1.17674 0.93471 0.93823 0.93178 0.93054 0.92403 0.93282 0.95027 0.93551 0.88515 0.95306 0.93002 0.91677 0.76951 0.87980 0.87967 0.88699 0.92236 0.92407 0.88316 0.86903 0.84307 0.84112 0.71037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.14 -2.57 6.26 -26.73 -0.17 -2.73 16 3 C 0.15 2.99 5.71 -4.04 -0.02 2.97 16 4 N -0.58 -13.67 2.43 -173.24 -0.42 -14.09 16 5 C -0.26 -6.93 9.42 -15.06 -0.14 -7.07 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 7 C 0.02 0.42 5.00 -17.43 -0.09 0.33 16 8 N -0.89 -24.43 11.44 55.49 0.63 -23.80 16 9 Si 0.89 21.45 29.60 -169.99 -5.03 16.41 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 C 0.13 2.88 5.50 -4.04 -0.02 2.86 16 14 C 0.10 1.90 5.97 -4.04 -0.02 1.88 16 15 N -0.72 -10.86 5.56 -60.29 -0.33 -11.20 16 16 C 0.51 7.29 7.29 -10.98 -0.08 7.21 16 17 O -0.54 -9.29 11.80 5.56 0.07 -9.23 16 18 C -0.15 -1.43 4.68 -27.88 -0.13 -1.56 16 19 C 0.16 1.42 0.83 -131.71 -0.11 1.31 16 20 C -0.17 -1.53 8.27 37.16 0.31 -1.22 16 21 C -0.12 -0.64 5.56 -25.23 -0.14 -0.78 16 22 C -0.59 -3.29 7.65 38.52 0.29 -2.99 16 23 S 2.56 27.58 6.47 -107.50 -0.70 26.88 16 24 O -0.96 -13.87 18.14 -57.37 -1.04 -14.91 16 25 O -0.95 -13.51 18.14 -57.37 -1.04 -14.55 16 26 N -1.08 -12.43 5.67 0.62 0.00 -12.42 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.92 6.65 -51.93 -0.35 0.58 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 33 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 34 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.10 2.35 5.53 -51.93 -0.29 2.06 16 36 H 0.03 0.56 7.83 -51.93 -0.41 0.16 16 37 H 0.05 1.02 6.65 -51.93 -0.35 0.67 16 38 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.40 5.02 8.47 -40.82 -0.35 4.67 16 40 H 0.10 0.90 8.11 -51.93 -0.42 0.48 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.17 5.50 -51.93 -0.29 0.89 16 43 H 0.06 0.41 7.97 -51.93 -0.41 -0.01 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.43 7.80 -51.93 -0.40 0.02 16 46 H 0.11 0.36 7.66 -51.93 -0.40 -0.04 16 47 H 0.14 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.44 6.03 7.03 -40.37 -0.28 5.75 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -35.17 397.21 -9.95 -45.12 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -8.12 Total: 7.32 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: -0.12 Total: -61.51 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -2.02 Total: -38.69 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.41 kcal Atomic # 16 Polarization: 27.58 SS G_CDS: -0.70 Total: 26.88 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.17 -9.95 -45.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691196262.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.066 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds