Wall clock time and date at job start Wed Apr 1 2020 04:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 N 1.46496 * 109.47202 * 180.02562 * 3 2 1 5 5 C 1.36943 * 120.00211 * 270.00190 * 4 3 2 6 6 H 1.07999 * 119.99753 * 38.12326 * 5 4 3 7 7 C 1.38808 * 120.00456 * 218.13401 * 5 4 3 8 8 N 1.31624 * 119.99814 * 21.28127 * 7 5 4 9 9 Si 1.86800 * 120.00286 * 201.28486 * 7 5 4 10 10 H 1.48504 * 109.46789 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47017 * 119.99748 * 9 7 5 12 12 H 1.48501 * 109.47147 * 239.99622 * 9 7 5 13 13 C 1.46499 * 120.00396 * 90.00240 * 4 3 2 14 14 C 1.53003 * 109.47018 * 264.50183 * 13 4 3 15 15 N 1.46500 * 109.47280 * 179.97438 * 14 13 4 16 16 C 1.34778 * 119.99953 * 179.97438 * 15 14 13 17 17 O 1.21279 * 120.00246 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99602 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.46602 * 180.02562 * 18 16 15 20 20 C 1.53002 * 108.58318 * 61.54327 * 19 18 16 21 21 C 1.53260 * 108.52648 * 179.41388 * 19 18 16 22 22 C 1.55569 * 106.21133 * 148.50562 * 21 19 18 23 23 S 1.83895 * 99.69005 * 323.08592 * 22 21 19 24 24 O 1.42101 * 111.46841 * 144.05776 * 23 22 21 25 25 O 1.42095 * 111.46449 * 284.11615 * 23 22 21 26 26 N 1.46455 * 108.64915 * 303.54703 * 19 18 16 27 27 H 1.09005 * 109.46828 * 59.99649 * 1 2 3 28 28 H 1.08996 * 109.47251 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46586 * 300.00004 * 1 2 3 30 30 H 1.09003 * 109.47191 * 240.00398 * 2 1 3 31 31 H 1.09002 * 109.47260 * 120.00609 * 2 1 3 32 32 H 1.08999 * 109.47323 * 60.00447 * 3 2 1 33 33 H 1.09005 * 109.47485 * 299.99948 * 3 2 1 34 34 H 0.97002 * 119.99744 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47723 * 144.50195 * 13 4 3 36 36 H 1.09001 * 109.47316 * 24.49985 * 13 4 3 37 37 H 1.08999 * 109.47190 * 59.99853 * 14 13 4 38 38 H 1.09000 * 109.47182 * 299.99571 * 14 13 4 39 39 H 0.96996 * 120.00176 * 0.02562 * 15 14 13 40 40 H 1.08999 * 109.47050 * 60.00200 * 18 16 15 41 41 H 1.09000 * 109.47092 * 300.00059 * 18 16 15 42 42 H 1.09000 * 109.47207 * 303.45467 * 20 19 18 43 43 H 1.08996 * 109.47195 * 63.45778 * 20 19 18 44 44 H 1.09002 * 109.46932 * 183.45246 * 20 19 18 45 45 H 1.09004 * 110.07507 * 29.34787 * 21 19 18 46 46 H 1.08992 * 110.15484 * 267.71828 * 21 19 18 47 47 H 1.08999 * 111.36897 * 205.45047 * 22 21 19 48 48 H 1.09004 * 111.36352 * 80.71260 * 22 21 19 49 49 H 0.96998 * 126.08310 * 57.30781 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1903 1.4422 1.1850 6 1 3.8234 0.8647 2.0206 7 6 5.3562 2.1845 1.3130 8 7 5.5893 3.1899 0.4962 9 14 6.5946 1.7564 2.6444 10 1 6.1004 0.5935 3.4246 11 1 7.8969 1.4151 2.0177 12 1 6.7707 2.9204 3.5494 13 6 4.2370 1.4427 -1.2696 14 6 4.6116 0.0069 -1.6426 15 7 5.3431 0.0070 -2.9118 16 6 5.7770 -1.1548 -3.4396 17 8 5.5615 -2.2003 -2.8641 18 6 6.5290 -1.1546 -4.7457 19 6 6.9037 -2.5904 -5.1185 20 6 5.6173 -3.3998 -5.2949 21 6 7.6534 -2.5667 -6.4550 22 6 8.6626 -3.7497 -6.4079 23 16 9.1498 -3.6706 -4.6364 24 8 9.3659 -4.9678 -4.0980 25 8 10.0445 -2.5945 -4.3908 26 7 7.6764 -3.1733 -4.0194 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 6.4042 3.7084 0.5854 35 1 5.1434 2.0394 -1.1662 36 1 3.6086 1.8690 -2.0515 37 1 3.7053 -0.5899 -1.7460 38 1 5.2401 -0.4195 -0.8607 39 1 5.5158 0.8432 -3.3720 40 1 7.4350 -0.5573 -4.6432 41 1 5.8997 -0.7291 -5.5273 42 1 5.0240 -3.3427 -4.3823 43 1 5.0434 -2.9930 -6.1275 44 1 5.8681 -4.4404 -5.5008 45 1 8.1873 -1.6232 -6.5678 46 1 6.9544 -2.7031 -7.2801 47 1 9.5153 -3.5706 -7.0628 48 1 8.1763 -4.6962 -6.6442 49 1 7.3860 -3.2556 -3.0976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691196262.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:31 Heat of formation + Delta-G solvation = -117.458156 kcal Electronic energy + Delta-G solvation = -29799.281953 eV Core-core repulsion = 25694.952661 eV Total energy + Delta-G solvation = -4104.329291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.18695 -38.93598 -38.16414 -37.96703 -36.91105 -35.63675 -34.61602 -32.69569 -32.61166 -31.69185 -29.99931 -28.30217 -27.35737 -25.50247 -24.71426 -22.67452 -21.98081 -21.63262 -21.05050 -20.47850 -18.74483 -18.48464 -17.70737 -17.41626 -17.03999 -16.96017 -16.66238 -16.46513 -15.95125 -15.89219 -15.65173 -15.22002 -14.87431 -14.68606 -14.47812 -14.29585 -14.12541 -13.99616 -13.54222 -13.38883 -13.21977 -13.20121 -13.07408 -13.07177 -12.92012 -12.76887 -12.65166 -12.51385 -12.45793 -12.22430 -12.07220 -12.03757 -11.88241 -11.78875 -11.64262 -11.40814 -11.32270 -10.60048 -10.56408 -10.32923 -9.90860 -8.60272 -7.86124 -5.51802 -0.65672 1.38250 1.44363 1.51993 1.69137 1.77896 2.29043 2.48480 2.72251 3.07119 3.19542 3.38562 3.56388 3.71253 3.77661 3.99698 4.09198 4.21807 4.30136 4.35251 4.40365 4.50342 4.60572 4.62833 4.68846 4.72980 4.75550 4.76965 4.86450 4.91121 4.97242 4.99256 5.09794 5.17883 5.24057 5.27063 5.31356 5.43014 5.46298 5.61531 5.63868 5.69652 5.78351 6.23733 6.43153 6.71536 7.13673 7.41114 7.81975 8.32951 9.06739 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.002935 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.915009 B = 9536.606416 C =10913.654330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.268 4.268 6 H 0.049 0.951 7 C -0.024 4.024 8 N -0.907 5.907 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.285 1.285 13 C 0.142 3.858 14 C 0.123 3.877 15 N -0.718 5.718 16 C 0.504 3.496 17 O -0.576 6.576 18 C -0.145 4.145 19 C 0.147 3.853 20 C -0.167 4.167 21 C -0.114 4.114 22 C -0.545 4.545 23 S 2.542 3.458 24 O -1.015 7.015 25 O -1.002 7.002 26 N -1.091 6.091 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.253 0.747 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.021 0.979 39 H 0.411 0.589 40 H 0.110 0.890 41 H 0.146 0.854 42 H 0.054 0.946 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.117 0.883 46 H 0.154 0.846 47 H 0.175 0.825 48 H 0.165 0.835 49 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.033 -9.361 -22.757 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.399 4.399 6 H 0.066 0.934 7 C -0.222 4.222 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.199 1.199 11 H -0.220 1.220 12 H -0.211 1.211 13 C 0.015 3.985 14 C -0.003 4.003 15 N -0.369 5.369 16 C 0.292 3.708 17 O -0.457 6.457 18 C -0.186 4.186 19 C 0.057 3.943 20 C -0.225 4.225 21 C -0.153 4.153 22 C -0.680 4.680 23 S 2.642 3.358 24 O -1.005 7.005 25 O -0.991 6.991 26 N -0.858 5.858 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.040 0.960 39 H 0.247 0.753 40 H 0.129 0.871 41 H 0.163 0.837 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.136 0.864 46 H 0.172 0.828 47 H 0.193 0.807 48 H 0.183 0.817 49 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 0.846 -10.127 -21.818 24.069 hybrid contribution 0.362 0.263 1.426 1.494 sum 1.208 -9.864 -20.392 22.685 Atomic orbital electron populations 1.21655 0.94212 1.01771 1.02040 1.22013 0.96443 0.98707 1.00158 1.21060 0.83298 0.94492 0.99119 1.43844 1.00870 1.85407 1.01694 1.19143 1.06605 1.21970 0.92171 0.93371 1.25672 1.02000 0.94807 0.99729 1.70057 1.26172 1.17838 1.41015 0.85592 0.79510 0.77832 0.79825 1.19914 1.21970 1.21111 1.20950 0.98546 0.92460 0.86539 1.21769 0.94176 1.00438 0.83951 1.46049 1.57108 1.09943 1.23838 1.21352 0.78462 0.82956 0.88013 1.90560 1.58817 1.32324 1.63969 1.22337 1.02484 0.98980 0.94803 1.20660 0.94516 0.92348 0.86764 1.22480 0.96419 1.00201 1.03444 1.22751 0.98675 0.98277 0.95624 1.30566 1.10991 1.08834 1.17644 1.06975 0.73853 0.73247 0.81685 1.93534 1.85643 1.42262 1.79042 1.93595 1.64574 1.55707 1.85209 1.55203 1.34621 1.78196 1.17787 0.91897 0.92284 0.92729 0.93444 0.94641 0.94486 0.93375 0.93742 0.91205 0.93267 0.93457 0.96032 0.75330 0.87148 0.83660 0.92677 0.89151 0.91723 0.86443 0.82815 0.80709 0.81684 0.72863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.13 -4.70 6.26 30.59 0.19 -4.51 16 3 C 0.15 5.90 5.71 86.38 0.49 6.39 16 4 N -0.60 -28.78 2.43 -702.00 -1.71 -30.49 16 5 C -0.27 -14.63 9.42 84.03 0.79 -13.84 16 6 H 0.05 2.70 7.92 -2.91 -0.02 2.68 16 7 C -0.02 -1.30 5.00 84.86 0.42 -0.88 16 8 N -0.91 -51.05 11.44 21.65 0.25 -50.80 16 9 Si 0.94 45.33 29.60 68.60 2.03 47.36 16 10 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 13 C 0.14 6.16 5.50 86.38 0.47 6.63 16 14 C 0.12 4.91 5.97 86.38 0.52 5.43 16 15 N -0.72 -21.64 5.56 -463.05 -2.57 -24.21 16 16 C 0.50 14.16 7.29 87.66 0.64 14.80 16 17 O -0.58 -20.39 11.80 -3.03 -0.04 -20.42 16 18 C -0.14 -2.33 4.68 29.85 0.14 -2.19 16 19 C 0.15 2.23 0.83 3.70 0.00 2.23 16 20 C -0.17 -2.57 8.27 71.98 0.60 -1.97 16 21 C -0.11 -0.59 5.56 31.57 0.18 -0.42 16 22 C -0.54 -3.42 7.65 72.87 0.56 -2.87 16 23 S 2.54 54.04 6.47 -56.49 -0.37 53.68 16 24 O -1.01 -30.60 18.14 -127.81 -2.32 -32.92 16 25 O -1.00 -28.94 18.14 -127.81 -2.32 -31.26 16 26 N -1.09 -25.26 5.67 -151.94 -0.86 -26.13 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.69 6.65 -2.39 -0.02 1.68 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.56 8.04 -2.39 -0.02 1.54 16 33 H 0.05 1.78 7.86 -2.38 -0.02 1.76 16 34 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 35 H 0.07 3.48 5.53 -2.39 -0.01 3.47 16 36 H 0.05 1.90 7.83 -2.39 -0.02 1.88 16 37 H 0.05 1.91 6.65 -2.39 -0.02 1.89 16 38 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.41 9.98 8.47 -92.71 -0.79 9.20 16 40 H 0.11 1.66 8.11 -2.39 -0.02 1.64 16 41 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.33 5.50 -2.39 -0.01 1.32 16 43 H 0.09 0.80 7.97 -2.39 -0.02 0.78 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.12 0.30 7.80 -2.39 -0.02 0.28 16 46 H 0.15 -0.25 7.66 -2.39 -0.02 -0.27 16 47 H 0.18 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.17 0.45 8.14 -2.38 -0.02 0.43 16 49 H 0.43 12.59 7.03 -93.00 -0.65 11.94 16 Total: -1.00 -83.41 397.21 -2.66 -86.08 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -0.48 Total: 23.33 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 5.71 Total: 5.79 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -4.89 Total: -131.63 kcal Atomic # 8 Polarization: -79.93 SS G_CDS: -4.67 Total: -84.60 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 54.04 SS G_CDS: -0.37 Total: 53.68 kcal Total: -83.41 -2.66 -86.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691196262.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.381 kcal (2) G-P(sol) polarization free energy of solvation -83.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds