Wall clock time and date at job start Wed Apr 1 2020 04:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46827 * 2 1 4 4 N 1.46503 * 109.47120 * 179.97438 * 3 2 1 5 5 C 1.34766 * 119.99895 * 274.47701 * 4 3 2 6 6 O 1.21292 * 119.99987 * 184.68148 * 5 4 3 7 7 C 1.50698 * 120.00274 * 4.68112 * 5 4 3 8 8 H 1.09001 * 109.47397 * 40.84226 * 7 5 4 9 9 C 1.53005 * 109.47306 * 280.84085 * 7 5 4 10 10 N 1.46501 * 109.47226 * 160.84282 * 7 5 4 11 11 S 1.65605 * 119.99966 * 215.00039 * 10 7 5 12 12 C 1.81396 * 104.45011 * 65.00010 * 11 10 7 13 13 O 1.42103 * 104.27746 * 181.06994 * 11 10 7 14 14 O 1.42093 * 104.27828 * 308.92661 * 11 10 7 15 15 C 1.46501 * 119.99542 * 94.47668 * 4 3 2 16 16 H 1.08998 * 110.88929 * 349.02796 * 15 4 3 17 17 C 1.55150 * 111.00155 * 112.91439 * 15 4 3 18 18 C 1.54326 * 102.94662 * 82.60712 * 17 15 4 19 19 N 1.47021 * 107.26657 * 22.19141 * 18 17 15 20 20 C 1.36939 * 125.64386 * 181.02362 * 19 18 17 21 21 H 1.07997 * 119.99757 * 179.74821 * 20 19 18 22 22 C 1.38808 * 120.00348 * 0.02805 * 20 19 18 23 23 N 1.31621 * 119.99652 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00443 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47013 * 59.99234 * 24 22 20 26 26 H 1.48499 * 109.47546 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46905 * 299.99987 * 24 22 20 28 28 C 1.47420 * 108.70495 * 1.28596 * 19 18 17 29 29 H 1.08994 * 109.46948 * 300.00158 * 1 2 3 30 30 H 1.09000 * 109.46774 * 60.00465 * 1 2 3 31 31 H 1.08999 * 109.46702 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47344 * 240.00098 * 2 1 3 33 33 H 1.09000 * 109.46774 * 119.99534 * 2 1 3 34 34 H 1.09000 * 109.46971 * 59.99455 * 3 2 1 35 35 H 1.09002 * 109.47116 * 300.00133 * 3 2 1 36 36 H 1.08996 * 109.47020 * 186.13784 * 9 7 5 37 37 H 1.08999 * 109.46633 * 306.14027 * 9 7 5 38 38 H 1.08994 * 109.46626 * 66.13931 * 9 7 5 39 39 H 0.96999 * 120.00347 * 35.00279 * 10 7 5 40 40 H 1.09006 * 109.47422 * 59.99813 * 12 11 10 41 41 H 1.08997 * 109.47311 * 179.97438 * 12 11 10 42 42 H 1.09000 * 109.46895 * 300.00118 * 12 11 10 43 43 H 1.08999 * 110.72444 * 324.23912 * 17 15 4 44 44 H 1.09007 * 110.87039 * 201.04274 * 17 15 4 45 45 H 1.08995 * 109.88085 * 262.77366 * 18 17 15 46 46 H 1.09002 * 110.01061 * 141.67736 * 18 17 15 47 47 H 0.97000 * 119.99931 * 180.02562 * 23 22 20 48 48 H 1.09003 * 110.36499 * 94.48840 * 28 19 18 49 49 H 1.08997 * 110.36591 * 216.80194 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1784 1.3517 1.1645 6 8 5.3882 1.4371 1.1734 7 6 3.4281 1.1440 2.4548 8 1 2.6228 0.4269 2.2956 9 6 2.8394 2.4765 2.9228 10 7 4.3449 0.6300 3.4754 11 16 3.8044 -0.4567 4.6022 12 6 3.3819 -1.9348 3.6393 13 8 4.9379 -0.7035 5.4229 14 8 2.6317 0.1440 5.1340 15 6 4.2380 1.5415 -1.2640 16 1 3.5668 1.4134 -2.1132 17 6 5.0043 2.8872 -1.3588 18 6 6.2977 2.6051 -0.5655 19 7 6.4915 1.1478 -0.5507 20 6 7.5171 0.4854 0.0695 21 1 7.5686 -0.5924 0.0253 22 6 8.4871 1.1988 0.7600 23 7 8.4215 2.5121 0.8181 24 14 9.8865 0.2953 1.6055 25 1 10.6577 -0.4764 0.5980 26 1 10.7819 1.2779 2.2673 27 1 9.3325 -0.6339 2.6228 28 6 5.4025 0.5182 -1.3195 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 2.3909 2.3495 3.9080 37 1 3.6308 3.2241 2.9773 38 1 2.0773 2.8049 2.2162 39 1 5.2684 0.9261 3.4913 40 1 4.2692 -2.2955 3.1190 41 1 3.0130 -2.7116 4.3090 42 1 2.6100 -1.6856 2.9112 43 1 4.4333 3.6900 -0.8925 44 1 5.2337 3.1313 -2.3961 45 1 6.1953 2.9758 0.4543 46 1 7.1460 3.0870 -1.0516 47 1 9.0995 3.0108 1.3003 48 1 5.7141 0.3501 -2.3505 49 1 5.1040 -0.4213 -0.8546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691864948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:54 Heat of formation + Delta-G solvation = -24.620171 kcal Electronic energy + Delta-G solvation = -32336.824545 eV Core-core repulsion = 28236.521011 eV Total energy + Delta-G solvation = -4100.303534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.13049 -37.17123 -36.76801 -35.91252 -35.89494 -34.58591 -32.89639 -31.54859 -29.80241 -29.51012 -28.91129 -27.29894 -25.90029 -24.56239 -23.77452 -21.63173 -20.96574 -19.84177 -19.41922 -18.43938 -17.65957 -16.84820 -16.52500 -16.22843 -16.05216 -15.61501 -14.92559 -14.80065 -14.54702 -14.36388 -13.89197 -13.67822 -13.60110 -13.38431 -13.23185 -13.07928 -12.81013 -12.55092 -12.25584 -12.06088 -11.96803 -11.90752 -11.73140 -11.67282 -11.65851 -11.56819 -11.40844 -11.27794 -11.06621 -10.74380 -10.72626 -10.67401 -10.61059 -9.98776 -9.96490 -9.66627 -9.55679 -9.42268 -8.52224 -8.38941 -7.82637 -6.27712 -5.42145 -2.68123 0.30524 2.69219 3.39582 3.43284 3.54316 3.59405 3.60313 3.84752 4.19091 4.64137 4.67167 4.71622 4.72174 4.83805 4.93554 5.02625 5.14546 5.27886 5.32504 5.36536 5.44136 5.50737 5.53940 5.61310 5.69248 5.71085 5.83640 5.87978 5.90626 5.92424 6.04254 6.06808 6.18859 6.26810 6.34549 6.51774 6.60358 6.61529 6.76185 7.24217 7.27737 7.76428 7.91366 7.99439 8.14960 8.55087 9.10953 9.50307 10.12378 10.78347 11.70252 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008860 B = 0.006225 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.521742 B = 4496.595543 C = 6641.759852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.147 4.147 3 C 0.103 3.897 4 N -0.611 5.611 5 C 0.450 3.550 6 O -0.386 6.386 7 C 0.136 3.864 8 H 0.088 0.912 9 C -0.166 4.166 10 N -1.096 6.096 11 S 2.614 3.386 12 C -0.677 4.677 13 O -0.956 6.956 14 O -0.961 6.961 15 C 0.135 3.865 16 H 0.080 0.920 17 C -0.160 4.160 18 C 0.193 3.807 19 N -0.567 5.567 20 C -0.199 4.199 21 H 0.064 0.936 22 C -0.002 4.002 23 N -0.917 5.917 24 Si 0.896 3.104 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.288 1.288 28 C 0.130 3.870 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.433 0.567 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.026 0.974 47 H 0.245 0.755 48 H 0.021 0.979 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.944 -3.938 -0.858 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 C -0.021 4.021 4 N -0.349 5.349 5 C 0.231 3.769 6 O -0.249 6.249 7 C 0.024 3.976 8 H 0.105 0.895 9 C -0.225 4.225 10 N -0.859 5.859 11 S 2.705 3.295 12 C -0.826 4.826 13 O -0.947 6.947 14 O -0.951 6.951 15 C 0.030 3.970 16 H 0.098 0.902 17 C -0.200 4.200 18 C 0.069 3.931 19 N -0.293 5.293 20 C -0.328 4.328 21 H 0.082 0.918 22 C -0.198 4.198 23 N -0.566 5.566 24 Si 0.728 3.272 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.215 1.215 28 C 0.002 3.998 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.271 0.729 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.045 0.955 47 H 0.055 0.945 48 H 0.038 0.962 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -18.221 -3.741 0.239 18.603 hybrid contribution 0.865 -0.883 -0.253 1.261 sum -17.357 -4.624 -0.014 17.962 Atomic orbital electron populations 1.21733 0.95371 1.01818 1.02013 1.22090 0.95820 0.98081 1.02593 1.21733 0.81037 0.96133 1.03151 1.47747 1.04848 1.76442 1.05892 1.20627 0.89893 0.81952 0.84440 1.91527 1.10261 1.39384 1.83725 1.20685 0.90869 0.97591 0.88410 0.89458 1.22300 1.01385 0.96274 1.02520 1.55409 1.23126 1.59999 1.47318 1.04715 0.74379 0.76011 0.74425 1.30575 1.12755 1.22696 1.16608 1.93634 1.50391 1.85697 1.64942 1.93593 1.51091 1.73851 1.76524 1.22293 0.93093 0.97323 0.84264 0.90182 1.23368 1.00117 0.95921 1.00548 1.21134 0.89724 0.84702 0.97571 1.44127 1.25204 1.01631 1.58290 1.18690 0.99133 0.89914 1.25025 0.91767 1.24545 0.98770 0.95456 1.01040 1.69934 1.35335 1.04277 1.47022 0.86454 0.82758 0.78462 0.79572 1.21840 1.21930 1.21508 1.21804 0.88560 0.94341 0.95088 0.92478 0.92523 0.92680 0.91325 0.92262 0.90394 0.90576 0.90372 0.91209 0.91231 0.72857 0.84810 0.85536 0.85776 0.92500 0.92269 0.91776 0.95546 0.94452 0.96192 0.94976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.65 16 2 C -0.15 -1.27 6.06 -26.73 -0.16 -1.43 16 3 C 0.10 1.01 5.04 -4.04 -0.02 0.99 16 4 N -0.61 -8.69 2.57 -163.54 -0.42 -9.11 16 5 C 0.45 7.60 6.40 -10.99 -0.07 7.53 16 6 O -0.39 -8.57 7.94 5.55 0.04 -8.53 16 7 C 0.14 1.86 2.27 -69.08 -0.16 1.70 16 8 H 0.09 0.93 4.62 -51.93 -0.24 0.69 16 9 C -0.17 -2.07 9.29 37.16 0.35 -1.73 16 10 N -1.10 -16.36 5.28 -5.88 -0.03 -16.39 16 11 S 2.61 34.61 6.02 -107.50 -0.65 33.96 16 12 C -0.68 -6.38 10.78 101.05 1.09 -5.29 16 13 O -0.96 -16.58 18.08 -57.54 -1.04 -17.62 16 14 O -0.96 -14.07 17.04 -57.54 -0.98 -15.05 16 15 C 0.13 2.14 3.76 -65.67 -0.25 1.89 16 16 H 0.08 1.03 7.94 -51.93 -0.41 0.62 16 17 C -0.16 -2.90 6.53 -24.90 -0.16 -3.06 16 18 C 0.19 4.66 4.21 -3.06 -0.01 4.65 16 19 N -0.57 -14.04 1.75 -169.94 -0.30 -14.34 16 20 C -0.20 -5.54 8.94 -15.06 -0.13 -5.67 16 21 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 22 C 0.00 -0.07 5.48 -17.43 -0.10 -0.17 16 23 N -0.92 -27.43 10.31 55.49 0.57 -26.86 16 24 Si 0.90 23.07 29.55 -169.99 -5.02 18.05 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 C 0.13 2.58 6.29 -2.41 -0.02 2.57 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.53 6.33 -51.93 -0.33 0.20 16 34 H 0.08 0.69 4.69 -51.93 -0.24 0.45 16 35 H 0.08 0.65 7.96 -51.93 -0.41 0.24 16 36 H 0.08 0.97 7.36 -51.93 -0.38 0.58 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.70 5.73 -51.93 -0.30 0.40 16 39 H 0.43 7.54 8.05 -34.47 -0.28 7.26 16 40 H 0.13 1.31 8.14 -51.92 -0.42 0.89 16 41 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.12 0.95 7.44 -51.92 -0.39 0.56 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 1.75 5.52 -51.93 -0.29 1.46 16 46 H 0.03 0.73 7.50 -51.93 -0.39 0.34 16 47 H 0.24 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 383.66 15.07 5.78 5.78 Total: -1.00 -36.50 383.66 -9.17 -45.67 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.85 Total: 3.09 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 0.72 Total: 1.34 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -0.18 Total: -66.70 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -1.98 Total: -41.20 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Atomic # 16 Polarization: 34.61 SS G_CDS: -0.65 Total: 33.96 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.50 -9.17 -45.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691864948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.051 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds