Wall clock time and date at job start Wed Apr 1 2020 04:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46827 * 2 1 4 4 N 1.46503 * 109.47120 * 179.97438 * 3 2 1 5 5 C 1.34766 * 119.99895 * 274.47701 * 4 3 2 6 6 O 1.21292 * 119.99987 * 184.68148 * 5 4 3 7 7 C 1.50698 * 120.00274 * 4.68112 * 5 4 3 8 8 H 1.09001 * 109.47397 * 40.84226 * 7 5 4 9 9 C 1.53005 * 109.47306 * 280.84085 * 7 5 4 10 10 N 1.46501 * 109.47226 * 160.84282 * 7 5 4 11 11 S 1.65605 * 119.99966 * 215.00039 * 10 7 5 12 12 C 1.81396 * 104.45011 * 65.00010 * 11 10 7 13 13 O 1.42103 * 104.27746 * 181.06994 * 11 10 7 14 14 O 1.42093 * 104.27828 * 308.92661 * 11 10 7 15 15 C 1.46501 * 119.99542 * 94.47668 * 4 3 2 16 16 H 1.08998 * 110.88929 * 349.02796 * 15 4 3 17 17 C 1.55150 * 111.00155 * 112.91439 * 15 4 3 18 18 C 1.54326 * 102.94662 * 82.60712 * 17 15 4 19 19 N 1.47021 * 107.26657 * 22.19141 * 18 17 15 20 20 C 1.36939 * 125.64386 * 181.02362 * 19 18 17 21 21 H 1.07997 * 119.99757 * 179.74821 * 20 19 18 22 22 C 1.38808 * 120.00348 * 0.02805 * 20 19 18 23 23 N 1.31621 * 119.99652 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00443 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47013 * 59.99234 * 24 22 20 26 26 H 1.48499 * 109.47546 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46905 * 299.99987 * 24 22 20 28 28 C 1.47420 * 108.70495 * 1.28596 * 19 18 17 29 29 H 1.08994 * 109.46948 * 300.00158 * 1 2 3 30 30 H 1.09000 * 109.46774 * 60.00465 * 1 2 3 31 31 H 1.08999 * 109.46702 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47344 * 240.00098 * 2 1 3 33 33 H 1.09000 * 109.46774 * 119.99534 * 2 1 3 34 34 H 1.09000 * 109.46971 * 59.99455 * 3 2 1 35 35 H 1.09002 * 109.47116 * 300.00133 * 3 2 1 36 36 H 1.08996 * 109.47020 * 186.13784 * 9 7 5 37 37 H 1.08999 * 109.46633 * 306.14027 * 9 7 5 38 38 H 1.08994 * 109.46626 * 66.13931 * 9 7 5 39 39 H 0.96999 * 120.00347 * 35.00279 * 10 7 5 40 40 H 1.09006 * 109.47422 * 59.99813 * 12 11 10 41 41 H 1.08997 * 109.47311 * 179.97438 * 12 11 10 42 42 H 1.09000 * 109.46895 * 300.00118 * 12 11 10 43 43 H 1.08999 * 110.72444 * 324.23912 * 17 15 4 44 44 H 1.09007 * 110.87039 * 201.04274 * 17 15 4 45 45 H 1.08995 * 109.88085 * 262.77366 * 18 17 15 46 46 H 1.09002 * 110.01061 * 141.67736 * 18 17 15 47 47 H 0.97000 * 119.99931 * 180.02562 * 23 22 20 48 48 H 1.09003 * 110.36499 * 94.48840 * 28 19 18 49 49 H 1.08997 * 110.36591 * 216.80194 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1784 1.3517 1.1645 6 8 5.3882 1.4371 1.1734 7 6 3.4281 1.1440 2.4548 8 1 2.6228 0.4269 2.2956 9 6 2.8394 2.4765 2.9228 10 7 4.3449 0.6300 3.4754 11 16 3.8044 -0.4567 4.6022 12 6 3.3819 -1.9348 3.6393 13 8 4.9379 -0.7035 5.4229 14 8 2.6317 0.1440 5.1340 15 6 4.2380 1.5415 -1.2640 16 1 3.5668 1.4134 -2.1132 17 6 5.0043 2.8872 -1.3588 18 6 6.2977 2.6051 -0.5655 19 7 6.4915 1.1478 -0.5507 20 6 7.5171 0.4854 0.0695 21 1 7.5686 -0.5924 0.0253 22 6 8.4871 1.1988 0.7600 23 7 8.4215 2.5121 0.8181 24 14 9.8865 0.2953 1.6055 25 1 10.6577 -0.4764 0.5980 26 1 10.7819 1.2779 2.2673 27 1 9.3325 -0.6339 2.6228 28 6 5.4025 0.5182 -1.3195 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 2.3909 2.3495 3.9080 37 1 3.6308 3.2241 2.9773 38 1 2.0773 2.8049 2.2162 39 1 5.2684 0.9261 3.4913 40 1 4.2692 -2.2955 3.1190 41 1 3.0130 -2.7116 4.3090 42 1 2.6100 -1.6856 2.9112 43 1 4.4333 3.6900 -0.8925 44 1 5.2337 3.1313 -2.3961 45 1 6.1953 2.9758 0.4543 46 1 7.1460 3.0870 -1.0516 47 1 9.0995 3.0108 1.3003 48 1 5.7141 0.3501 -2.3505 49 1 5.1040 -0.4213 -0.8546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691864948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:52 Heat of formation + Delta-G solvation = -52.595795 kcal Electronic energy + Delta-G solvation = -32338.037659 eV Core-core repulsion = 28236.521011 eV Total energy + Delta-G solvation = -4101.516648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.42012 -38.47552 -38.09069 -37.05128 -36.97988 -35.91059 -34.34130 -32.95270 -31.07988 -30.55688 -30.33186 -28.82776 -26.78210 -26.36215 -25.04802 -22.39447 -22.24508 -21.68649 -20.48208 -19.67495 -18.91821 -18.45282 -17.86671 -17.30920 -17.23370 -16.84547 -16.45614 -16.14515 -15.88429 -15.57114 -15.46385 -15.01743 -14.62011 -14.17358 -14.11123 -14.04217 -13.89584 -13.64910 -13.57493 -13.48906 -13.25519 -13.15098 -13.05390 -12.93985 -12.77332 -12.73425 -12.69926 -12.51356 -12.46321 -12.27999 -12.07592 -12.00404 -11.85957 -11.64897 -11.53397 -11.28798 -11.25064 -10.68759 -10.47486 -9.82691 -9.25645 -8.22683 -7.59107 -4.81637 -0.71129 1.43985 1.47462 1.51078 1.62695 2.15160 2.30627 2.62104 2.84614 3.20928 3.59236 3.59634 3.78709 3.90144 3.98217 4.06149 4.10854 4.13898 4.22554 4.26737 4.37298 4.40420 4.46376 4.58797 4.70662 4.75140 4.83040 4.85950 4.89442 5.00063 5.02968 5.07627 5.14711 5.15765 5.24867 5.30053 5.36016 5.41180 5.59534 5.61054 5.91019 5.92270 6.06730 6.16217 6.48053 6.83368 7.37779 7.85113 8.09881 8.72979 9.51873 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008860 B = 0.006225 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.521742 B = 4496.595543 C = 6641.759852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.096 3.904 4 N -0.606 5.606 5 C 0.447 3.553 6 O -0.450 6.450 7 C 0.136 3.864 8 H 0.124 0.876 9 C -0.162 4.162 10 N -1.110 6.110 11 S 2.616 3.384 12 C -0.655 4.655 13 O -1.006 7.006 14 O -0.978 6.978 15 C 0.150 3.850 16 H 0.131 0.869 17 C -0.147 4.147 18 C 0.205 3.795 19 N -0.579 5.579 20 C -0.188 4.188 21 H 0.062 0.938 22 C -0.059 4.059 23 N -0.943 5.943 24 Si 0.946 3.054 25 H -0.283 1.283 26 H -0.303 1.303 27 H -0.289 1.289 28 C 0.123 3.877 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.099 0.901 39 H 0.417 0.583 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.152 0.848 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.027 0.973 46 H -0.026 1.026 47 H 0.231 0.769 48 H 0.028 0.972 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.011 -5.619 -2.464 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.026 4.026 4 N -0.342 5.342 5 C 0.230 3.770 6 O -0.317 6.317 7 C 0.025 3.975 8 H 0.142 0.858 9 C -0.221 4.221 10 N -0.869 5.869 11 S 2.712 3.288 12 C -0.808 4.808 13 O -0.997 6.997 14 O -0.968 6.968 15 C 0.046 3.954 16 H 0.148 0.852 17 C -0.186 4.186 18 C 0.080 3.920 19 N -0.304 5.304 20 C -0.318 4.318 21 H 0.080 0.920 22 C -0.252 4.252 23 N -0.595 5.595 24 Si 0.778 3.222 25 H -0.210 1.210 26 H -0.230 1.230 27 H -0.216 1.216 28 C -0.003 4.003 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.118 0.882 39 H 0.253 0.747 40 H 0.152 0.848 41 H 0.175 0.825 42 H 0.170 0.830 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.045 0.955 46 H -0.008 1.008 47 H 0.041 0.959 48 H 0.046 0.954 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -22.374 -5.420 -1.384 23.063 hybrid contribution 1.992 -0.450 0.191 2.051 sum -20.382 -5.870 -1.193 21.244 Atomic orbital electron populations 1.21708 0.93643 1.02405 1.02834 1.22053 0.97198 0.96782 1.02330 1.22089 0.77760 0.97668 1.05047 1.47831 1.06827 1.75035 1.04538 1.21209 0.89497 0.80358 0.85892 1.91520 1.12983 1.42351 1.84851 1.20852 0.90965 0.99100 0.86548 0.85836 1.22293 1.01204 0.95094 1.03516 1.55521 1.22430 1.61147 1.47754 1.04471 0.73172 0.76828 0.74289 1.30360 1.13749 1.19933 1.16792 1.93570 1.52496 1.86552 1.67081 1.93559 1.50797 1.75095 1.77382 1.22199 0.92749 0.93855 0.86625 0.85186 1.23201 0.97252 0.97768 1.00382 1.20776 0.90992 0.84196 0.96041 1.44235 1.25784 1.02185 1.58168 1.18932 0.99424 0.89931 1.23554 0.91983 1.25117 1.01181 0.96042 1.02837 1.70174 1.35598 1.05354 1.48335 0.85623 0.80615 0.77225 0.78734 1.20974 1.23037 1.21573 1.22022 0.88738 0.95216 0.94337 0.91782 0.91666 0.92273 0.91706 0.92553 0.89164 0.88139 0.90192 0.93835 0.88219 0.74723 0.84758 0.82498 0.82950 0.91316 0.90607 0.95466 1.00753 0.95911 0.95404 0.95142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.51 16 2 C -0.14 -1.77 6.06 30.60 0.19 -1.59 16 3 C 0.10 1.40 5.04 86.38 0.44 1.84 16 4 N -0.61 -15.26 2.57 -789.71 -2.03 -17.29 16 5 C 0.45 14.62 6.40 87.66 0.56 15.18 16 6 O -0.45 -20.46 7.94 -3.07 -0.02 -20.48 16 7 C 0.14 3.51 2.27 44.25 0.10 3.61 16 8 H 0.12 2.19 4.62 -2.39 -0.01 2.18 16 9 C -0.16 -3.83 9.29 71.98 0.67 -3.16 16 10 N -1.11 -33.40 5.28 -172.51 -0.91 -34.31 16 11 S 2.62 67.62 6.02 -56.49 -0.34 67.28 16 12 C -0.65 -10.10 10.78 113.37 1.22 -8.88 16 13 O -1.01 -35.95 18.08 -127.65 -2.31 -38.26 16 14 O -0.98 -27.51 17.04 -127.65 -2.18 -29.69 16 15 C 0.15 4.27 3.76 46.46 0.17 4.44 16 16 H 0.13 2.53 7.94 -2.39 -0.02 2.51 16 17 C -0.15 -5.07 6.53 31.78 0.21 -4.86 16 18 C 0.20 10.24 4.21 86.73 0.36 10.60 16 19 N -0.58 -29.17 1.75 -691.57 -1.21 -30.38 16 20 C -0.19 -10.78 8.94 84.03 0.75 -10.02 16 21 H 0.06 3.49 7.83 -2.91 -0.02 3.46 16 22 C -0.06 -3.56 5.48 84.86 0.47 -3.10 16 23 N -0.94 -59.87 10.31 21.65 0.22 -59.64 16 24 Si 0.95 49.43 29.55 68.60 2.03 51.46 16 25 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.30 -16.21 7.11 99.48 0.71 -15.51 16 27 H -0.29 -14.89 7.11 99.48 0.71 -14.19 16 28 C 0.12 4.69 6.29 86.93 0.55 5.24 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.71 6.33 -2.39 -0.02 0.70 16 34 H 0.09 1.13 4.69 -2.39 -0.01 1.12 16 35 H 0.10 1.08 7.96 -2.39 -0.02 1.06 16 36 H 0.08 1.87 7.36 -2.39 -0.02 1.85 16 37 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.10 1.68 5.73 -2.39 -0.01 1.66 16 39 H 0.42 15.54 8.05 -96.75 -0.78 14.76 16 40 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.16 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.15 1.55 7.44 -2.39 -0.02 1.53 16 43 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.08 2.37 8.14 -2.38 -0.02 2.36 16 45 H 0.03 1.58 5.52 -2.39 -0.01 1.57 16 46 H -0.03 -1.51 7.50 -2.39 -0.02 -1.53 16 47 H 0.23 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.03 1.04 8.14 -2.39 -0.02 1.03 16 49 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -86.78 383.66 -0.17 -86.96 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.18 Total: 15.56 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.40 Total: 8.80 kcal Atomic # 7 Polarization: -137.70 SS G_CDS: -3.93 Total: -141.63 kcal Atomic # 8 Polarization: -83.92 SS G_CDS: -4.51 Total: -88.43 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.03 Total: 51.46 kcal Atomic # 16 Polarization: 67.62 SS G_CDS: -0.34 Total: 67.28 kcal Total: -86.78 -0.17 -86.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691864948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.360 kcal (2) G-P(sol) polarization free energy of solvation -86.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds