Wall clock time and date at job start Wed Apr 1 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47165 * 2 1 4 4 N 1.46508 * 109.46944 * 239.99840 * 2 1 3 5 5 S 1.65596 * 119.99846 * 94.99758 * 4 2 1 6 6 C 1.81404 * 104.45096 * 65.00088 * 5 4 2 7 7 O 1.42101 * 104.27894 * 181.06763 * 5 4 2 8 8 O 1.42099 * 104.28192 * 308.92868 * 5 4 2 9 9 C 1.50698 * 109.47334 * 120.00102 * 2 1 3 10 10 O 1.21284 * 119.99892 * 106.14608 * 9 2 1 11 11 N 1.34770 * 119.99928 * 286.14797 * 9 2 1 12 12 C 1.47136 * 120.18490 * 0.88162 * 11 9 2 13 13 C 1.53624 * 107.52080 * 107.88227 * 12 11 9 14 14 C 1.53494 * 108.46203 * 69.77596 * 13 12 11 15 15 C 1.52475 * 109.14918 * 245.78820 * 14 13 12 16 16 C 1.53113 * 109.67350 * 43.93097 * 15 14 13 17 17 C 1.53440 * 109.34743 * 77.03342 * 16 15 14 18 18 H 1.08993 * 109.63089 * 47.55397 * 17 16 15 19 19 N 1.46497 * 109.62959 * 167.95348 * 17 16 15 20 20 C 1.36938 * 119.99909 * 312.43573 * 19 17 16 21 21 H 1.08003 * 120.00079 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00003 * 179.72905 * 20 19 17 23 23 N 1.31615 * 119.99889 * 0.27735 * 22 20 19 24 24 Si 1.86801 * 120.00117 * 180.27717 * 22 20 19 25 25 H 1.48506 * 109.47031 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99565 * 24 22 20 27 27 H 1.48499 * 109.47303 * 240.00463 * 24 22 20 28 28 C 1.46525 * 120.17099 * 180.99956 * 11 9 2 29 29 H 1.08999 * 109.47604 * 52.96992 * 1 2 3 30 30 H 1.09006 * 109.47052 * 172.97033 * 1 2 3 31 31 H 1.08999 * 109.47455 * 292.96885 * 1 2 3 32 32 H 0.96996 * 119.99983 * 274.99767 * 4 2 1 33 33 H 1.09005 * 109.46861 * 59.99467 * 6 5 4 34 34 H 1.08997 * 109.47738 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.46962 * 300.00593 * 6 5 4 36 36 H 1.08996 * 109.85172 * 348.37961 * 12 11 9 37 37 H 1.08998 * 109.90375 * 227.41584 * 12 11 9 38 38 H 1.08997 * 109.63635 * 310.08885 * 13 12 11 39 39 H 1.08996 * 109.63881 * 189.47142 * 13 12 11 40 40 H 1.09004 * 109.52345 * 125.88944 * 14 13 12 41 41 H 1.08998 * 109.52603 * 5.69268 * 14 13 12 42 42 H 1.09004 * 109.43498 * 283.86717 * 15 14 13 43 43 H 1.09000 * 109.43723 * 163.99256 * 15 14 13 44 44 H 1.09002 * 109.49260 * 317.07218 * 16 15 14 45 45 H 1.08999 * 109.51384 * 197.00770 * 16 15 14 46 46 H 0.97003 * 120.00479 * 132.44856 * 19 17 16 47 47 H 0.97004 * 119.99776 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.37932 * 172.85879 * 28 11 9 49 49 H 1.09003 * 109.59513 * 53.10760 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 16 2.4120 0.1771 -2.5505 6 6 3.8312 1.1872 -2.0443 7 8 2.8121 -0.8076 -3.4937 8 8 1.2750 0.9965 -2.7847 9 6 2.0323 -0.7104 1.2304 10 8 2.5099 -1.8213 1.1367 11 7 1.9509 -0.1113 2.4349 12 6 1.3546 1.2284 2.5560 13 6 -0.0116 1.0664 3.2395 14 6 0.2214 0.6714 4.7043 15 6 -0.3057 -0.7412 4.9312 16 6 0.1201 -1.6432 3.7696 17 6 1.5976 -2.0224 3.9356 18 1 1.7785 -2.3512 4.9589 19 7 1.9364 -3.1016 3.0046 20 6 1.1225 -4.1982 2.9023 21 1 0.2308 -4.2672 3.5076 22 6 1.4405 -5.2182 2.0161 23 7 2.5270 -5.1339 1.2781 24 14 0.3262 -6.7104 1.8708 25 1 -0.8219 -6.5634 2.8012 26 1 -0.1769 -6.8188 0.4779 27 1 1.0912 -7.9351 2.2176 28 6 2.4582 -0.7895 3.6305 29 1 -0.3634 0.6189 -0.8204 30 1 -0.3633 -1.0200 -0.1258 31 1 -0.3634 0.4010 0.9462 32 1 2.1109 -1.6562 -1.1949 33 1 4.6458 0.5361 -1.7269 34 1 4.1609 1.7978 -2.8847 35 1 3.5399 1.8342 -1.2167 36 1 1.2238 1.6661 1.5664 37 1 1.9977 1.8675 3.1610 38 1 -0.5828 0.2864 2.7361 39 1 -0.5567 2.0093 3.1966 40 1 -0.3062 1.3664 5.3574 41 1 1.2885 0.7018 4.9244 42 1 -1.3938 -0.7170 4.9917 43 1 0.1001 -1.1344 5.8633 44 1 -0.0152 -1.1115 2.8277 45 1 -0.4893 -2.5469 3.7679 46 1 2.7372 -3.0396 2.4608 47 1 2.7494 -5.8469 0.6591 48 1 2.4216 -0.1048 4.4777 49 1 3.4895 -1.1009 3.4644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692328797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:36 Heat of formation + Delta-G solvation = -49.056329 kcal Electronic energy + Delta-G solvation = -32110.694757 eV Core-core repulsion = 28009.331592 eV Total energy + Delta-G solvation = -4101.363165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.46923 -37.68444 -37.09016 -35.96811 -35.47756 -34.55666 -33.61680 -31.87796 -29.94990 -29.60441 -29.37755 -27.25021 -26.29256 -24.22254 -23.18975 -23.04174 -20.53837 -19.92364 -19.50301 -18.40563 -17.70447 -17.06801 -16.78431 -16.31182 -16.11566 -15.60889 -15.30996 -14.99496 -14.65970 -14.44443 -14.18422 -13.79808 -13.54709 -13.37409 -13.28528 -13.18163 -12.99325 -12.58192 -12.48973 -12.17453 -12.10659 -12.01823 -11.88366 -11.82065 -11.69636 -11.50966 -11.32709 -11.14099 -10.94714 -10.87902 -10.70553 -10.66828 -10.30110 -10.10969 -10.00977 -9.72329 -9.64113 -9.30376 -8.78729 -8.66954 -8.12998 -6.58277 -5.47984 -2.74022 0.22221 2.61727 3.10294 3.35426 3.54149 3.59198 3.61891 3.78639 4.11578 4.51695 4.60832 4.64208 4.75516 4.83205 4.86645 4.89576 5.13214 5.19614 5.28610 5.33279 5.40553 5.45303 5.49084 5.52836 5.72233 5.78668 5.80647 5.89413 5.90553 5.92906 6.00623 6.14174 6.16131 6.30505 6.32377 6.40361 6.47206 6.70872 6.78534 6.88905 7.05228 7.16481 7.28102 7.76887 7.90915 8.60777 8.82859 9.83749 10.49278 10.89943 11.72618 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008913 B = 0.005402 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3140.827987 B = 5181.811797 C = 7380.368568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.141 3.859 3 H 0.092 0.908 4 N -1.097 6.097 5 S 2.615 3.385 6 C -0.678 4.678 7 O -0.955 6.955 8 O -0.959 6.959 9 C 0.488 3.512 10 O -0.444 6.444 11 N -0.610 5.610 12 C 0.103 3.897 13 C -0.153 4.153 14 C -0.125 4.125 15 C -0.120 4.120 16 C -0.139 4.139 17 C 0.164 3.836 18 H 0.023 0.977 19 N -0.712 5.712 20 C -0.231 4.231 21 H 0.062 0.938 22 C -0.010 4.010 23 N -0.915 5.915 24 Si 0.891 3.109 25 H -0.285 1.285 26 H -0.295 1.295 27 H -0.296 1.296 28 C 0.111 3.889 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.434 0.566 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.400 0.600 47 H 0.247 0.753 48 H 0.083 0.917 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.328 20.739 1.070 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.029 3.971 3 H 0.110 0.890 4 N -0.860 5.860 5 S 2.706 3.294 6 C -0.827 4.827 7 O -0.945 6.945 8 O -0.949 6.949 9 C 0.271 3.729 10 O -0.312 6.312 11 N -0.347 5.347 12 C -0.021 4.021 13 C -0.191 4.191 14 C -0.162 4.162 15 C -0.158 4.158 16 C -0.179 4.179 17 C 0.053 3.947 18 H 0.040 0.960 19 N -0.363 5.363 20 C -0.362 4.362 21 H 0.080 0.920 22 C -0.207 4.207 23 N -0.563 5.563 24 Si 0.724 3.276 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.223 1.223 28 C -0.012 4.012 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.274 0.726 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.243 0.757 47 H 0.058 0.942 48 H 0.101 0.899 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.553 20.108 0.145 20.116 hybrid contribution -0.003 -0.971 0.376 1.041 sum -0.555 19.137 0.521 19.152 Atomic orbital electron populations 1.22409 0.92731 1.04668 1.03444 1.20549 0.96398 0.94919 0.85207 0.89017 1.55462 1.81220 1.21093 1.28225 1.04714 0.76391 0.74954 0.73361 1.30584 1.22604 1.16803 1.12712 1.93636 1.84428 1.57410 1.59066 1.93604 1.46231 1.71050 1.83968 1.20504 0.81248 0.87115 0.84072 1.90826 1.40643 1.15962 1.83791 1.47958 1.62187 1.17464 1.07113 1.22039 0.94354 0.84418 1.01257 1.22598 0.97453 1.02009 0.97016 1.21871 1.01598 0.97108 0.95638 1.21546 0.99656 0.94977 0.99619 1.22444 0.98999 0.98882 0.97530 1.20758 0.92113 0.87973 0.93876 0.95965 1.43010 1.29825 1.16896 1.46530 1.19137 1.03659 0.96015 1.17438 0.91981 1.24633 0.97881 0.98412 0.99749 1.69735 1.25524 1.32964 1.28086 0.86361 0.80077 0.84132 0.77071 1.21033 1.22294 1.22315 1.22057 0.98037 0.94901 0.86184 0.90362 0.90678 0.90692 0.72633 0.84934 0.85499 0.85725 0.90216 0.90893 0.89380 0.91606 0.92835 0.91183 0.93139 0.92469 0.90920 0.91784 0.75655 0.94247 0.89933 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.17 37.15 0.34 -1.85 16 2 C 0.14 1.80 2.23 -69.08 -0.15 1.64 16 3 H 0.09 0.79 5.86 -51.93 -0.30 0.49 16 4 N -1.10 -15.11 5.24 -5.88 -0.03 -15.14 16 5 S 2.62 31.06 6.02 -107.50 -0.65 30.41 16 6 C -0.68 -5.17 10.78 101.05 1.09 -4.08 16 7 O -0.96 -15.30 18.08 -57.54 -1.04 -16.34 16 8 O -0.96 -13.19 17.25 -57.54 -0.99 -14.18 16 9 C 0.49 7.82 6.18 -10.99 -0.07 7.76 16 10 O -0.44 -9.58 11.77 5.55 0.07 -9.51 16 11 N -0.61 -8.10 1.72 -172.52 -0.30 -8.40 16 12 C 0.10 0.93 5.18 -3.37 -0.02 0.91 16 13 C -0.15 -1.43 4.93 -26.15 -0.13 -1.56 16 14 C -0.13 -1.26 5.48 -26.74 -0.15 -1.40 16 15 C -0.12 -1.56 5.67 -26.94 -0.15 -1.71 16 16 C -0.14 -2.40 4.73 -26.45 -0.13 -2.52 16 17 C 0.16 3.12 2.99 -67.49 -0.20 2.92 16 18 H 0.02 0.46 7.89 -51.93 -0.41 0.05 16 19 N -0.71 -17.74 4.01 -53.00 -0.21 -17.95 16 20 C -0.23 -6.45 9.23 -15.06 -0.14 -6.59 16 21 H 0.06 1.72 6.46 -52.48 -0.34 1.38 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 23 N -0.91 -28.32 13.06 55.49 0.72 -27.59 16 24 Si 0.89 23.22 29.55 -169.99 -5.02 18.20 16 25 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 27 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 28 C 0.11 1.66 4.90 -3.81 -0.02 1.64 16 29 H 0.08 0.92 7.57 -51.93 -0.39 0.53 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.82 4.34 -51.93 -0.23 0.59 16 32 H 0.43 7.15 8.06 -34.47 -0.28 6.87 16 33 H 0.13 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.12 0.71 7.44 -51.92 -0.39 0.32 16 36 H 0.08 0.58 5.19 -51.93 -0.27 0.31 16 37 H 0.07 0.53 7.97 -51.93 -0.41 0.11 16 38 H 0.09 1.02 3.87 -51.93 -0.20 0.82 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.69 4.49 -51.93 -0.23 0.45 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.75 7.85 -51.93 -0.41 0.34 16 44 H 0.07 1.23 3.69 -51.93 -0.19 1.04 16 45 H 0.06 1.31 6.27 -51.93 -0.33 0.99 16 46 H 0.40 10.85 4.92 -40.82 -0.20 10.65 16 47 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.08 0.97 5.08 -51.93 -0.26 0.71 16 49 H 0.06 1.06 8.03 -51.93 -0.42 0.64 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -37.76 367.12 -8.67 -46.43 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -6.93 Total: 13.79 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 0.18 Total: -5.25 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: 0.18 Total: -69.08 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -1.97 Total: -40.03 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Atomic # 16 Polarization: 31.06 SS G_CDS: -0.65 Total: 30.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.76 -8.67 -46.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692328797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.623 kcal (2) G-P(sol) polarization free energy of solvation -37.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds