Wall clock time and date at job start Wed Apr 1 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47165 * 2 1 4 4 N 1.46508 * 109.46944 * 239.99840 * 2 1 3 5 5 S 1.65596 * 119.99846 * 94.99758 * 4 2 1 6 6 C 1.81404 * 104.45096 * 65.00088 * 5 4 2 7 7 O 1.42101 * 104.27894 * 181.06763 * 5 4 2 8 8 O 1.42099 * 104.28192 * 308.92868 * 5 4 2 9 9 C 1.50698 * 109.47334 * 120.00102 * 2 1 3 10 10 O 1.21284 * 119.99892 * 106.14608 * 9 2 1 11 11 N 1.34770 * 119.99928 * 286.14797 * 9 2 1 12 12 C 1.47136 * 120.18490 * 0.88162 * 11 9 2 13 13 C 1.53624 * 107.52080 * 107.88227 * 12 11 9 14 14 C 1.53494 * 108.46203 * 69.77596 * 13 12 11 15 15 C 1.52475 * 109.14918 * 245.78820 * 14 13 12 16 16 C 1.53113 * 109.67350 * 43.93097 * 15 14 13 17 17 C 1.53440 * 109.34743 * 77.03342 * 16 15 14 18 18 H 1.08993 * 109.63089 * 47.55397 * 17 16 15 19 19 N 1.46497 * 109.62959 * 167.95348 * 17 16 15 20 20 C 1.36938 * 119.99909 * 312.43573 * 19 17 16 21 21 H 1.08003 * 120.00079 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00003 * 179.72905 * 20 19 17 23 23 N 1.31615 * 119.99889 * 0.27735 * 22 20 19 24 24 Si 1.86801 * 120.00117 * 180.27717 * 22 20 19 25 25 H 1.48506 * 109.47031 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99565 * 24 22 20 27 27 H 1.48499 * 109.47303 * 240.00463 * 24 22 20 28 28 C 1.46525 * 120.17099 * 180.99956 * 11 9 2 29 29 H 1.08999 * 109.47604 * 52.96992 * 1 2 3 30 30 H 1.09006 * 109.47052 * 172.97033 * 1 2 3 31 31 H 1.08999 * 109.47455 * 292.96885 * 1 2 3 32 32 H 0.96996 * 119.99983 * 274.99767 * 4 2 1 33 33 H 1.09005 * 109.46861 * 59.99467 * 6 5 4 34 34 H 1.08997 * 109.47738 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.46962 * 300.00593 * 6 5 4 36 36 H 1.08996 * 109.85172 * 348.37961 * 12 11 9 37 37 H 1.08998 * 109.90375 * 227.41584 * 12 11 9 38 38 H 1.08997 * 109.63635 * 310.08885 * 13 12 11 39 39 H 1.08996 * 109.63881 * 189.47142 * 13 12 11 40 40 H 1.09004 * 109.52345 * 125.88944 * 14 13 12 41 41 H 1.08998 * 109.52603 * 5.69268 * 14 13 12 42 42 H 1.09004 * 109.43498 * 283.86717 * 15 14 13 43 43 H 1.09000 * 109.43723 * 163.99256 * 15 14 13 44 44 H 1.09002 * 109.49260 * 317.07218 * 16 15 14 45 45 H 1.08999 * 109.51384 * 197.00770 * 16 15 14 46 46 H 0.97003 * 120.00479 * 132.44856 * 19 17 16 47 47 H 0.97004 * 119.99776 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.37932 * 172.85879 * 28 11 9 49 49 H 1.09003 * 109.59513 * 53.10760 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 16 2.4120 0.1771 -2.5505 6 6 3.8312 1.1872 -2.0443 7 8 2.8121 -0.8076 -3.4937 8 8 1.2750 0.9965 -2.7847 9 6 2.0323 -0.7104 1.2304 10 8 2.5099 -1.8213 1.1367 11 7 1.9509 -0.1113 2.4349 12 6 1.3546 1.2284 2.5560 13 6 -0.0116 1.0664 3.2395 14 6 0.2214 0.6714 4.7043 15 6 -0.3057 -0.7412 4.9312 16 6 0.1201 -1.6432 3.7696 17 6 1.5976 -2.0224 3.9356 18 1 1.7785 -2.3512 4.9589 19 7 1.9364 -3.1016 3.0046 20 6 1.1225 -4.1982 2.9023 21 1 0.2308 -4.2672 3.5076 22 6 1.4405 -5.2182 2.0161 23 7 2.5270 -5.1339 1.2781 24 14 0.3262 -6.7104 1.8708 25 1 -0.8219 -6.5634 2.8012 26 1 -0.1769 -6.8188 0.4779 27 1 1.0912 -7.9351 2.2176 28 6 2.4582 -0.7895 3.6305 29 1 -0.3634 0.6189 -0.8204 30 1 -0.3633 -1.0200 -0.1258 31 1 -0.3634 0.4010 0.9462 32 1 2.1109 -1.6562 -1.1949 33 1 4.6458 0.5361 -1.7269 34 1 4.1609 1.7978 -2.8847 35 1 3.5399 1.8342 -1.2167 36 1 1.2238 1.6661 1.5664 37 1 1.9977 1.8675 3.1610 38 1 -0.5828 0.2864 2.7361 39 1 -0.5567 2.0093 3.1966 40 1 -0.3062 1.3664 5.3574 41 1 1.2885 0.7018 4.9244 42 1 -1.3938 -0.7170 4.9917 43 1 0.1001 -1.1344 5.8633 44 1 -0.0152 -1.1115 2.8277 45 1 -0.4893 -2.5469 3.7679 46 1 2.7372 -3.0396 2.4608 47 1 2.7494 -5.8469 0.6591 48 1 2.4216 -0.1048 4.4777 49 1 3.4895 -1.1009 3.4644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692328797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:34 Heat of formation + Delta-G solvation = -79.915287 kcal Electronic energy + Delta-G solvation = -32112.032902 eV Core-core repulsion = 28009.331592 eV Total energy + Delta-G solvation = -4102.701310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.61720 -38.85792 -38.15090 -37.01761 -36.74463 -35.95704 -34.82521 -33.62137 -31.15600 -30.80094 -30.28894 -28.58300 -27.43552 -25.73849 -24.75834 -24.00819 -21.75179 -21.06376 -20.46101 -19.62357 -18.92650 -18.74074 -17.86837 -17.27388 -17.20769 -16.94110 -16.53839 -16.40004 -15.87135 -15.70404 -15.54891 -14.91119 -14.72358 -14.63943 -14.31050 -14.05733 -13.97343 -13.83410 -13.61535 -13.39474 -13.20474 -13.14416 -13.09691 -13.02347 -12.86324 -12.81324 -12.63870 -12.57924 -12.41871 -12.22514 -12.08458 -12.01433 -11.77796 -11.60064 -11.20928 -11.10551 -10.84940 -10.71515 -10.70557 -10.08556 -9.33197 -8.63744 -7.72396 -4.94861 -0.66855 1.41715 1.42653 1.50957 1.66355 1.92803 2.29397 2.62947 2.91100 3.26424 3.53313 3.56093 3.75039 3.91045 4.04151 4.08704 4.13941 4.15876 4.21888 4.25879 4.33250 4.38053 4.48132 4.58497 4.63544 4.75364 4.80687 4.85655 4.88888 4.91851 4.97259 5.08648 5.09051 5.20696 5.23755 5.31475 5.36733 5.50643 5.56201 5.64915 5.66960 5.80191 5.91272 5.93163 6.45431 6.69168 7.47338 7.66560 8.47889 8.78296 9.48848 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008913 B = 0.005402 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3140.827987 B = 5181.811797 C = 7380.368568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 H 0.144 0.856 4 N -1.111 6.111 5 S 2.617 3.383 6 C -0.651 4.651 7 O -1.007 7.007 8 O -0.982 6.982 9 C 0.481 3.519 10 O -0.510 6.510 11 N -0.602 5.602 12 C 0.093 3.907 13 C -0.152 4.152 14 C -0.119 4.119 15 C -0.113 4.113 16 C -0.130 4.130 17 C 0.151 3.849 18 H 0.015 0.985 19 N -0.722 5.722 20 C -0.216 4.216 21 H 0.060 0.940 22 C -0.076 4.076 23 N -0.948 5.948 24 Si 0.948 3.052 25 H -0.273 1.273 26 H -0.304 1.304 27 H -0.298 1.298 28 C 0.120 3.880 29 H 0.089 0.911 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.418 0.582 33 H 0.138 0.862 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.018 0.982 46 H 0.390 0.610 47 H 0.238 0.762 48 H 0.126 0.874 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.520 25.478 2.600 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.029 3.971 3 H 0.161 0.839 4 N -0.869 5.869 5 S 2.713 3.287 6 C -0.805 4.805 7 O -0.998 6.998 8 O -0.972 6.972 9 C 0.266 3.734 10 O -0.382 6.382 11 N -0.338 5.338 12 C -0.028 4.028 13 C -0.190 4.190 14 C -0.156 4.156 15 C -0.151 4.151 16 C -0.169 4.169 17 C 0.042 3.958 18 H 0.032 0.968 19 N -0.371 5.371 20 C -0.349 4.349 21 H 0.078 0.922 22 C -0.268 4.268 23 N -0.600 5.600 24 Si 0.780 3.220 25 H -0.197 1.197 26 H -0.232 1.232 27 H -0.226 1.226 28 C -0.003 4.003 29 H 0.108 0.892 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.253 0.747 33 H 0.157 0.843 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.037 0.963 46 H 0.231 0.769 47 H 0.047 0.953 48 H 0.144 0.856 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.840 24.912 1.727 24.986 hybrid contribution 0.041 -2.300 0.019 2.300 sum -0.799 22.613 1.746 22.694 Atomic orbital electron populations 1.22402 0.92904 1.02592 1.04990 1.20780 0.96232 0.96779 0.83347 0.83864 1.55565 1.82099 1.20389 1.28868 1.04493 0.77248 0.74513 0.72428 1.30334 1.18979 1.16227 1.14968 1.93569 1.85266 1.59914 1.61061 1.93562 1.48585 1.70806 1.84229 1.21157 0.80108 0.86532 0.85610 1.90803 1.43664 1.18881 1.84843 1.48037 1.61255 1.18845 1.05613 1.22505 0.94479 0.82194 1.03604 1.22578 0.97574 1.02796 0.96073 1.21852 1.02059 0.94944 0.96754 1.21475 1.00149 0.96282 0.97241 1.22308 0.96598 0.97998 0.99980 1.21070 0.94360 0.88403 0.92001 0.96789 1.43233 1.29060 1.17733 1.47103 1.19434 1.03154 0.96587 1.15770 0.92230 1.25283 0.99564 1.01252 1.00734 1.69913 1.27376 1.33411 1.29316 0.85424 0.78827 0.81202 0.76519 1.19750 1.23206 1.22602 1.21897 0.95879 0.94143 0.88383 0.89250 0.94574 0.88643 0.74666 0.84343 0.82707 0.82413 0.87741 0.87358 0.92014 0.88183 0.90278 0.90509 0.92589 0.92686 0.90599 0.96321 0.76892 0.95332 0.85622 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 9.17 71.98 0.66 -3.46 16 2 C 0.14 3.34 2.23 44.24 0.10 3.43 16 3 H 0.14 1.82 5.86 -2.39 -0.01 1.80 16 4 N -1.11 -31.05 5.24 -172.52 -0.90 -31.96 16 5 S 2.62 60.39 6.02 -56.49 -0.34 60.05 16 6 C -0.65 -7.35 10.78 113.37 1.22 -6.13 16 7 O -1.01 -33.58 18.08 -127.65 -2.31 -35.89 16 8 O -0.98 -25.82 17.25 -127.65 -2.20 -28.03 16 9 C 0.48 15.15 6.18 87.66 0.54 15.69 16 10 O -0.51 -22.92 11.77 -3.04 -0.04 -22.95 16 11 N -0.60 -14.47 1.72 -818.13 -1.41 -15.88 16 12 C 0.09 1.18 5.18 86.47 0.45 1.63 16 13 C -0.15 -2.10 4.93 30.97 0.15 -1.94 16 14 C -0.12 -1.81 5.48 30.59 0.17 -1.64 16 15 C -0.11 -2.69 5.67 30.46 0.17 -2.52 16 16 C -0.13 -4.47 4.73 30.78 0.15 -4.32 16 17 C 0.15 5.80 2.99 45.28 0.14 5.94 16 18 H 0.01 0.59 7.89 -2.39 -0.02 0.57 16 19 N -0.72 -37.54 4.01 -321.59 -1.29 -38.83 16 20 C -0.22 -12.64 9.23 84.03 0.78 -11.86 16 21 H 0.06 3.44 6.46 -2.91 -0.02 3.42 16 22 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 23 N -0.95 -61.93 13.06 21.65 0.28 -61.65 16 24 Si 0.95 50.03 29.55 68.60 2.03 52.06 16 25 H -0.27 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.30 -16.29 7.11 99.48 0.71 -15.59 16 27 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 28 C 0.12 3.40 4.90 86.51 0.42 3.82 16 29 H 0.09 1.96 7.57 -2.39 -0.02 1.94 16 30 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.10 1.85 4.34 -2.39 -0.01 1.84 16 32 H 0.42 14.92 8.06 -96.75 -0.78 14.14 16 33 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.16 0.83 7.44 -2.39 -0.02 0.81 16 36 H 0.10 0.85 5.19 -2.39 -0.01 0.83 16 37 H 0.11 0.75 7.97 -2.39 -0.02 0.73 16 38 H 0.06 1.23 3.87 -2.39 -0.01 1.22 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.08 1.07 4.49 -2.39 -0.01 1.06 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.05 1.33 7.85 -2.39 -0.02 1.31 16 44 H 0.08 2.55 3.69 -2.39 -0.01 2.54 16 45 H 0.02 0.78 6.27 -2.39 -0.01 0.76 16 46 H 0.39 22.23 4.92 -92.77 -0.46 21.78 16 47 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 48 H 0.13 2.46 5.08 -2.39 -0.01 2.45 16 49 H 0.04 1.42 8.03 -2.39 -0.02 1.40 16 Total: -1.00 -91.30 367.12 -1.00 -92.30 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -0.22 Total: 36.32 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 5.41 Total: -5.55 kcal Atomic # 7 Polarization: -144.99 SS G_CDS: -3.32 Total: -148.31 kcal Atomic # 8 Polarization: -82.32 SS G_CDS: -4.55 Total: -86.87 kcal Atomic # 14 Polarization: 50.03 SS G_CDS: 2.03 Total: 52.06 kcal Atomic # 16 Polarization: 60.39 SS G_CDS: -0.34 Total: 60.05 kcal Total: -91.30 -1.00 -92.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692328797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.384 kcal (2) G-P(sol) polarization free energy of solvation -91.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds