Wall clock time and date at job start Wed Apr 1 2020 05:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47519 * 2 1 4 4 N 1.46502 * 109.47334 * 239.99428 * 2 1 3 5 5 S 1.65599 * 119.99974 * 95.00126 * 4 2 1 6 6 C 1.81405 * 104.44767 * 65.00234 * 5 4 2 7 7 O 1.42098 * 104.27553 * 181.07563 * 5 4 2 8 8 O 1.42104 * 104.27691 * 308.93446 * 5 4 2 9 9 C 1.50704 * 109.46752 * 119.99994 * 2 1 3 10 10 O 1.21278 * 120.00215 * 102.35099 * 9 2 1 11 11 N 1.34780 * 120.00062 * 282.34566 * 9 2 1 12 12 C 1.46956 * 120.36550 * 174.18902 * 11 9 2 13 13 C 1.52340 * 109.09186 * 291.65837 * 12 11 9 14 14 C 1.53803 * 109.15811 * 287.30741 * 13 12 11 15 15 C 1.52451 * 109.40773 * 77.84707 * 14 13 12 16 16 C 1.53955 * 110.72031 * 246.25903 * 15 14 13 17 17 C 1.52882 * 109.72785 * 44.36598 * 16 15 14 18 18 H 1.09000 * 109.48192 * 312.89516 * 17 16 15 19 19 N 1.46502 * 109.48640 * 192.85772 * 17 16 15 20 20 C 1.36939 * 119.99889 * 84.72064 * 19 17 16 21 21 H 1.07996 * 119.99990 * 0.02562 * 20 19 17 22 22 C 1.38809 * 119.99815 * 179.97438 * 20 19 17 23 23 N 1.31625 * 120.00102 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00087 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47276 * 90.00060 * 24 22 20 26 26 H 1.48499 * 109.47086 * 209.99755 * 24 22 20 27 27 H 1.48501 * 109.47351 * 329.99983 * 24 22 20 28 28 C 1.45333 * 120.36013 * 354.20600 * 11 9 2 29 29 H 1.09005 * 109.46638 * 302.12820 * 1 2 3 30 30 H 1.09006 * 109.46626 * 62.11989 * 1 2 3 31 31 H 1.08997 * 109.47402 * 182.12505 * 1 2 3 32 32 H 0.97002 * 119.99633 * 275.01148 * 4 2 1 33 33 H 1.09004 * 109.46503 * 60.00053 * 6 5 4 34 34 H 1.08994 * 109.47045 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.47043 * 300.00481 * 6 5 4 36 36 H 1.09000 * 109.53074 * 171.77895 * 12 11 9 37 37 H 1.08994 * 109.59852 * 51.58144 * 12 11 9 38 38 H 1.08998 * 109.52266 * 167.41049 * 13 12 11 39 39 H 1.08997 * 109.52426 * 47.21373 * 13 12 11 40 40 H 1.09002 * 109.48604 * 317.86168 * 14 13 12 41 41 H 1.09004 * 109.47860 * 197.81921 * 14 13 12 42 42 H 1.09002 * 109.22748 * 125.94601 * 15 14 13 43 43 H 1.08992 * 109.19327 * 6.55569 * 15 14 13 44 44 H 1.08998 * 109.43562 * 284.28457 * 16 15 14 45 45 H 1.08998 * 109.42631 * 164.43645 * 16 15 14 46 46 H 0.96994 * 119.99855 * 264.99508 * 19 17 16 47 47 H 0.96996 * 119.99717 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.67801 * 16.90697 * 28 11 9 49 49 H 1.08995 * 109.67656 * 256.35956 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 16 2.4123 0.1769 -2.5505 6 6 3.8315 1.1870 -2.0440 7 8 2.8123 -0.8079 -3.4935 8 8 1.2752 0.9965 -2.7846 9 6 2.0323 -0.7104 1.2305 10 8 2.4462 -1.8474 1.1479 11 7 2.0216 -0.0823 2.4229 12 6 2.3886 -0.8068 3.6476 13 6 1.3170 -1.8459 3.9520 14 6 0.0527 -1.1330 4.4607 15 6 -0.6983 -0.5291 3.2794 16 6 -0.6862 1.0086 3.3550 17 6 0.7162 1.4964 3.7190 18 1 1.0963 0.9158 4.5596 19 7 0.6602 2.9129 4.0889 20 6 0.3389 3.2737 5.3702 21 1 0.1272 2.5141 6.1081 22 6 0.2864 4.6158 5.7208 23 7 -0.0219 4.9627 6.9525 24 14 0.6533 5.9296 4.4446 25 1 -0.6045 6.3162 3.7564 26 1 1.2376 7.1198 5.1133 27 1 1.6186 5.3973 3.4495 28 6 1.6465 1.3190 2.5116 29 1 -0.3633 0.5466 0.8704 30 1 -0.3633 0.4806 -0.9085 31 1 -0.3634 -1.0269 0.0381 32 1 2.1109 -1.6563 -1.1947 33 1 4.6460 0.5358 -1.7267 34 1 4.1613 1.7975 -2.8845 35 1 3.5401 1.8340 -1.2166 36 1 2.4619 -0.1048 4.4782 37 1 3.3481 -1.3038 3.5047 38 1 1.6813 -2.5315 4.7171 39 1 1.0814 -2.4026 3.0450 40 1 0.3359 -0.3415 5.1546 41 1 -0.5893 -1.8513 4.9706 42 1 -1.7299 -0.8809 3.2921 43 1 -0.2221 -0.8466 2.3519 44 1 -1.3939 1.3400 4.1148 45 1 -0.9739 1.4213 2.3880 46 1 0.8468 3.5951 3.4252 47 1 -0.0589 5.9005 7.1974 48 1 1.1271 1.6183 1.6012 49 1 2.5392 1.9303 2.6433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692328798.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:39 Heat of formation + Delta-G solvation = -78.917981 kcal Electronic energy + Delta-G solvation = -31321.716863 eV Core-core repulsion = 27219.058799 eV Total energy + Delta-G solvation = -4102.658064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90238 -38.07722 -37.41238 -36.27862 -35.84192 -34.79960 -34.23653 -32.34505 -30.93817 -29.91254 -29.74232 -27.64474 -26.46749 -24.65753 -23.22309 -22.38538 -21.73878 -19.98449 -19.63683 -18.94522 -18.28251 -17.90159 -17.03625 -16.61316 -16.50549 -15.87791 -15.80496 -15.28903 -14.85999 -14.57666 -14.24459 -13.98356 -13.91141 -13.69768 -13.59349 -13.52627 -13.31671 -13.01652 -12.70131 -12.64880 -12.45692 -12.38166 -12.28064 -12.05247 -11.97226 -11.80704 -11.59738 -11.42380 -11.17822 -11.15616 -10.99430 -10.82101 -10.46848 -10.44539 -10.30114 -10.23189 -9.92679 -9.70273 -9.56725 -9.03339 -8.53541 -7.40542 -5.87914 -3.25519 -0.07785 2.23409 2.42668 2.92694 3.27099 3.30862 3.38029 3.47773 3.85205 4.14912 4.38960 4.39780 4.48342 4.60417 4.77420 4.81699 4.88337 5.00155 5.06183 5.19069 5.22622 5.27137 5.30120 5.46935 5.48572 5.51342 5.60215 5.62045 5.64704 5.75405 5.81576 5.95499 6.01179 6.05159 6.10165 6.18510 6.34055 6.40854 6.46308 6.54706 6.67136 6.77851 6.88813 7.33355 7.85582 7.98633 8.29964 9.07129 9.79415 9.97033 11.29939 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.003780 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.821832 B = 7405.486018 C = 8912.385979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.133 3.867 3 H 0.102 0.898 4 N -1.102 6.102 5 S 2.615 3.385 6 C -0.677 4.677 7 O -0.957 6.957 8 O -0.951 6.951 9 C 0.513 3.487 10 O -0.534 6.534 11 N -0.592 5.592 12 C 0.114 3.886 13 C -0.135 4.135 14 C -0.128 4.128 15 C -0.122 4.122 16 C -0.139 4.139 17 C 0.160 3.840 18 H 0.079 0.921 19 N -0.747 5.747 20 C -0.246 4.246 21 H 0.091 0.909 22 C 0.008 3.992 23 N -0.931 5.931 24 Si 0.884 3.116 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.082 3.918 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.427 0.573 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.050 0.950 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.360 0.640 47 H 0.260 0.740 48 H 0.081 0.919 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.728 -10.847 -14.503 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.021 3.979 3 H 0.120 0.880 4 N -0.862 5.862 5 S 2.706 3.294 6 C -0.827 4.827 7 O -0.947 6.947 8 O -0.941 6.941 9 C 0.298 3.702 10 O -0.411 6.411 11 N -0.325 5.325 12 C -0.008 4.008 13 C -0.173 4.173 14 C -0.165 4.165 15 C -0.161 4.161 16 C -0.179 4.179 17 C 0.051 3.949 18 H 0.096 0.904 19 N -0.389 5.389 20 C -0.376 4.376 21 H 0.109 0.891 22 C -0.188 4.188 23 N -0.578 5.578 24 Si 0.714 3.286 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.042 4.042 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.264 0.736 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.193 0.807 47 H 0.071 0.929 48 H 0.099 0.901 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.463 -11.271 -15.102 19.621 hybrid contribution 0.707 1.084 -0.216 1.312 sum 6.171 -10.187 -15.318 19.404 Atomic orbital electron populations 1.22495 0.91846 1.04180 1.05071 1.20686 0.97002 0.95868 0.84306 0.87998 1.55513 1.81654 1.20474 1.28585 1.04779 0.76495 0.75016 0.73088 1.30568 1.22054 1.16826 1.13216 1.93627 1.84550 1.57748 1.58800 1.93638 1.46132 1.70704 1.83606 1.20472 0.78406 0.86952 0.84356 1.90667 1.46715 1.18196 1.85539 1.47725 1.66378 1.11634 1.06733 1.21612 0.97832 0.94957 0.86424 1.22031 0.95896 0.97727 1.01669 1.21837 0.96211 0.99968 0.98518 1.21819 0.99479 0.96343 0.98413 1.22484 1.00219 0.93614 1.01541 1.20909 0.92452 0.87083 0.94480 0.90398 1.42694 1.85220 1.00657 1.10357 1.18985 1.39859 0.92747 0.85986 0.89132 1.24668 1.01364 0.96768 0.95993 1.69695 1.54521 1.16553 1.16997 0.86583 0.78149 0.82478 0.81405 1.20995 1.21770 1.20367 1.22259 0.99875 0.80830 1.01202 0.89569 0.89481 0.91160 0.73626 0.85061 0.85122 0.85350 0.88735 0.91121 0.91254 0.91001 0.90254 0.92548 0.93091 0.92176 0.90829 0.92825 0.80686 0.92940 0.90074 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 8.16 37.16 0.30 -1.46 16 2 C 0.13 1.29 2.22 -69.08 -0.15 1.14 16 3 H 0.10 0.77 5.87 -51.93 -0.30 0.46 16 4 N -1.10 -9.93 5.27 -5.88 -0.03 -9.97 16 5 S 2.62 22.59 6.02 -107.50 -0.65 21.95 16 6 C -0.68 -3.78 10.78 101.05 1.09 -2.69 16 7 O -0.96 -11.38 18.08 -57.54 -1.04 -12.42 16 8 O -0.95 -11.00 17.08 -57.54 -0.98 -11.99 16 9 C 0.51 6.00 5.44 -10.98 -0.06 5.94 16 10 O -0.53 -7.47 14.99 5.56 0.08 -7.39 16 11 N -0.59 -6.86 1.68 -174.37 -0.29 -7.16 16 12 C 0.11 1.32 5.17 -4.13 -0.02 1.30 16 13 C -0.13 -1.54 5.56 -26.65 -0.15 -1.69 16 14 C -0.13 -1.58 5.49 -26.59 -0.15 -1.72 16 15 C -0.12 -1.54 5.15 -26.51 -0.14 -1.67 16 16 C -0.14 -2.03 4.91 -26.29 -0.13 -2.16 16 17 C 0.16 2.50 2.29 -67.76 -0.16 2.35 16 18 H 0.08 1.27 3.29 -51.93 -0.17 1.10 16 19 N -0.75 -15.15 4.93 -53.26 -0.26 -15.41 16 20 C -0.25 -6.24 10.37 -15.06 -0.16 -6.40 16 21 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 22 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 23 N -0.93 -27.63 13.97 55.49 0.78 -26.85 16 24 Si 0.88 20.48 27.73 -169.99 -4.71 15.77 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -5.88 6.52 56.52 0.37 -5.51 16 28 C 0.08 1.01 4.99 -4.44 -0.02 0.99 16 29 H 0.09 0.87 3.55 -51.93 -0.18 0.68 16 30 H 0.09 0.87 7.39 -51.93 -0.38 0.49 16 31 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 32 H 0.43 3.91 8.05 -34.47 -0.28 3.63 16 33 H 0.13 0.63 8.14 -51.92 -0.42 0.20 16 34 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.13 0.60 7.44 -51.92 -0.39 0.21 16 36 H 0.09 1.13 6.07 -51.93 -0.32 0.81 16 37 H 0.07 0.80 8.04 -51.93 -0.42 0.39 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.91 6.39 -51.93 -0.33 0.58 16 40 H 0.08 1.11 5.47 -51.93 -0.28 0.82 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.72 3.50 -51.93 -0.18 0.54 16 44 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 45 H 0.05 0.73 6.20 -51.93 -0.32 0.41 16 46 H 0.36 7.17 5.66 -40.82 -0.23 6.94 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.08 0.86 4.41 -51.93 -0.23 0.63 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -34.25 369.29 -8.37 -42.62 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -6.99 Total: 11.24 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 0.17 Total: -5.96 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.19 Total: -59.38 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.94 Total: -31.80 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.71 Total: 15.77 kcal Atomic # 16 Polarization: 22.59 SS G_CDS: -0.65 Total: 21.95 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.25 -8.37 -42.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692328798.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.297 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds