Wall clock time and date at job start Wed Apr 1 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47519 * 2 1 4 4 N 1.46502 * 109.47334 * 239.99428 * 2 1 3 5 5 S 1.65599 * 119.99974 * 95.00126 * 4 2 1 6 6 C 1.81405 * 104.44767 * 65.00234 * 5 4 2 7 7 O 1.42098 * 104.27553 * 181.07563 * 5 4 2 8 8 O 1.42104 * 104.27691 * 308.93446 * 5 4 2 9 9 C 1.50704 * 109.46752 * 119.99994 * 2 1 3 10 10 O 1.21278 * 120.00215 * 102.35099 * 9 2 1 11 11 N 1.34780 * 120.00062 * 282.34566 * 9 2 1 12 12 C 1.46956 * 120.36550 * 174.18902 * 11 9 2 13 13 C 1.52340 * 109.09186 * 291.65837 * 12 11 9 14 14 C 1.53803 * 109.15811 * 287.30741 * 13 12 11 15 15 C 1.52451 * 109.40773 * 77.84707 * 14 13 12 16 16 C 1.53955 * 110.72031 * 246.25903 * 15 14 13 17 17 C 1.52882 * 109.72785 * 44.36598 * 16 15 14 18 18 H 1.09000 * 109.48192 * 312.89516 * 17 16 15 19 19 N 1.46502 * 109.48640 * 192.85772 * 17 16 15 20 20 C 1.36939 * 119.99889 * 84.72064 * 19 17 16 21 21 H 1.07996 * 119.99990 * 0.02562 * 20 19 17 22 22 C 1.38809 * 119.99815 * 179.97438 * 20 19 17 23 23 N 1.31625 * 120.00102 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00087 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47276 * 90.00060 * 24 22 20 26 26 H 1.48499 * 109.47086 * 209.99755 * 24 22 20 27 27 H 1.48501 * 109.47351 * 329.99983 * 24 22 20 28 28 C 1.45333 * 120.36013 * 354.20600 * 11 9 2 29 29 H 1.09005 * 109.46638 * 302.12820 * 1 2 3 30 30 H 1.09006 * 109.46626 * 62.11989 * 1 2 3 31 31 H 1.08997 * 109.47402 * 182.12505 * 1 2 3 32 32 H 0.97002 * 119.99633 * 275.01148 * 4 2 1 33 33 H 1.09004 * 109.46503 * 60.00053 * 6 5 4 34 34 H 1.08994 * 109.47045 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.47043 * 300.00481 * 6 5 4 36 36 H 1.09000 * 109.53074 * 171.77895 * 12 11 9 37 37 H 1.08994 * 109.59852 * 51.58144 * 12 11 9 38 38 H 1.08998 * 109.52266 * 167.41049 * 13 12 11 39 39 H 1.08997 * 109.52426 * 47.21373 * 13 12 11 40 40 H 1.09002 * 109.48604 * 317.86168 * 14 13 12 41 41 H 1.09004 * 109.47860 * 197.81921 * 14 13 12 42 42 H 1.09002 * 109.22748 * 125.94601 * 15 14 13 43 43 H 1.08992 * 109.19327 * 6.55569 * 15 14 13 44 44 H 1.08998 * 109.43562 * 284.28457 * 16 15 14 45 45 H 1.08998 * 109.42631 * 164.43645 * 16 15 14 46 46 H 0.96994 * 119.99855 * 264.99508 * 19 17 16 47 47 H 0.96996 * 119.99717 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.67801 * 16.90697 * 28 11 9 49 49 H 1.08995 * 109.67656 * 256.35956 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 16 2.4123 0.1769 -2.5505 6 6 3.8315 1.1870 -2.0440 7 8 2.8123 -0.8079 -3.4935 8 8 1.2752 0.9965 -2.7846 9 6 2.0323 -0.7104 1.2305 10 8 2.4462 -1.8474 1.1479 11 7 2.0216 -0.0823 2.4229 12 6 2.3886 -0.8068 3.6476 13 6 1.3170 -1.8459 3.9520 14 6 0.0527 -1.1330 4.4607 15 6 -0.6983 -0.5291 3.2794 16 6 -0.6862 1.0086 3.3550 17 6 0.7162 1.4964 3.7190 18 1 1.0963 0.9158 4.5596 19 7 0.6602 2.9129 4.0889 20 6 0.3389 3.2737 5.3702 21 1 0.1272 2.5141 6.1081 22 6 0.2864 4.6158 5.7208 23 7 -0.0219 4.9627 6.9525 24 14 0.6533 5.9296 4.4446 25 1 -0.6045 6.3162 3.7564 26 1 1.2376 7.1198 5.1133 27 1 1.6186 5.3973 3.4495 28 6 1.6465 1.3190 2.5116 29 1 -0.3633 0.5466 0.8704 30 1 -0.3633 0.4806 -0.9085 31 1 -0.3634 -1.0269 0.0381 32 1 2.1109 -1.6563 -1.1947 33 1 4.6460 0.5358 -1.7267 34 1 4.1613 1.7975 -2.8845 35 1 3.5401 1.8340 -1.2166 36 1 2.4619 -0.1048 4.4782 37 1 3.3481 -1.3038 3.5047 38 1 1.6813 -2.5315 4.7171 39 1 1.0814 -2.4026 3.0450 40 1 0.3359 -0.3415 5.1546 41 1 -0.5893 -1.8513 4.9706 42 1 -1.7299 -0.8809 3.2921 43 1 -0.2221 -0.8466 2.3519 44 1 -1.3939 1.3400 4.1148 45 1 -0.9739 1.4213 2.3880 46 1 0.8468 3.5951 3.4252 47 1 -0.0589 5.9005 7.1974 48 1 1.1271 1.6183 1.6012 49 1 2.5392 1.9303 2.6433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692328798.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:38 Heat of formation + Delta-G solvation = -105.736201 kcal Electronic energy + Delta-G solvation = -31322.879788 eV Core-core repulsion = 27219.058799 eV Total energy + Delta-G solvation = -4103.820989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.87560 -39.15990 -38.19537 -37.05806 -36.72980 -36.18846 -35.25364 -33.95615 -32.28470 -30.84636 -30.30002 -28.84158 -27.50238 -25.76562 -24.73905 -23.37201 -22.95303 -20.87689 -20.50455 -20.07773 -19.65299 -18.99231 -17.97666 -17.50591 -17.22824 -16.92003 -16.81931 -16.41290 -15.97602 -15.75679 -15.42897 -15.23627 -14.91851 -14.76511 -14.53272 -14.28205 -14.05471 -13.99238 -13.92554 -13.82968 -13.35114 -13.22069 -13.17155 -13.07511 -13.03673 -12.84030 -12.79577 -12.65187 -12.38862 -12.28450 -12.06199 -12.01702 -11.90052 -11.75237 -11.55930 -11.40947 -11.32953 -10.93861 -10.75669 -10.45611 -9.57531 -9.20677 -7.95030 -5.28805 -0.71067 1.43769 1.45628 1.48506 1.55185 1.59119 2.03480 2.55717 2.85077 3.23060 3.27382 3.37349 3.65977 3.67649 3.79766 3.98717 4.01462 4.02788 4.06848 4.14407 4.15964 4.23768 4.32243 4.39718 4.51804 4.59053 4.67033 4.77087 4.79435 4.85020 4.86836 4.94244 5.00545 5.01985 5.14543 5.21230 5.25524 5.33852 5.40222 5.48941 5.59223 5.70662 5.86192 5.95849 6.27680 6.38940 7.05921 7.15972 7.90035 8.09011 9.26390 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011743 B = 0.003780 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.821832 B = 7405.486018 C = 8912.385979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.129 3.871 3 H 0.130 0.870 4 N -1.102 6.102 5 S 2.624 3.376 6 C -0.661 4.661 7 O -0.995 6.995 8 O -0.984 6.984 9 C 0.516 3.484 10 O -0.556 6.556 11 N -0.589 5.589 12 C 0.112 3.888 13 C -0.127 4.127 14 C -0.127 4.127 15 C -0.116 4.116 16 C -0.131 4.131 17 C 0.155 3.845 18 H 0.070 0.930 19 N -0.747 5.747 20 C -0.219 4.219 21 H 0.056 0.944 22 C -0.065 4.065 23 N -0.987 5.987 24 Si 0.950 3.050 25 H -0.283 1.283 26 H -0.305 1.305 27 H -0.239 1.239 28 C 0.089 3.911 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.425 0.575 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.068 0.932 46 H 0.367 0.633 47 H 0.255 0.745 48 H 0.105 0.895 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.222 -10.726 -16.878 21.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.018 3.982 3 H 0.148 0.852 4 N -0.862 5.862 5 S 2.719 3.281 6 C -0.814 4.814 7 O -0.986 6.986 8 O -0.974 6.974 9 C 0.302 3.698 10 O -0.434 6.434 11 N -0.321 5.321 12 C -0.010 4.010 13 C -0.165 4.165 14 C -0.164 4.164 15 C -0.154 4.154 16 C -0.171 4.171 17 C 0.047 3.953 18 H 0.088 0.912 19 N -0.390 5.390 20 C -0.350 4.350 21 H 0.074 0.926 22 C -0.256 4.256 23 N -0.638 5.638 24 Si 0.778 3.222 25 H -0.210 1.210 26 H -0.233 1.233 27 H -0.162 1.162 28 C -0.034 4.034 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.262 0.738 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.201 0.799 47 H 0.064 0.936 48 H 0.123 0.877 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.941 -11.227 -17.546 21.956 hybrid contribution 0.244 0.918 0.587 1.117 sum 7.185 -10.308 -16.959 21.106 Atomic orbital electron populations 1.22490 0.92073 1.04018 1.04999 1.20809 0.96851 0.97093 0.83474 0.85205 1.55426 1.82050 1.20496 1.28186 1.04333 0.76814 0.74473 0.72450 1.30415 1.19750 1.16579 1.14678 1.93577 1.85120 1.59505 1.60380 1.93594 1.48666 1.71001 1.84154 1.20758 0.77753 0.86616 0.84629 1.90667 1.47704 1.19240 1.85827 1.47683 1.66240 1.11356 1.06861 1.21623 0.98111 0.94896 0.86388 1.21951 0.95308 0.97660 1.01560 1.21805 0.96894 0.99588 0.98108 1.21766 1.00012 0.94652 0.98943 1.22348 0.98531 0.95170 1.01069 1.21098 0.93819 0.84384 0.96041 0.91206 1.42625 1.84940 1.02930 1.08517 1.18908 1.36976 0.91777 0.87339 0.92622 1.25471 1.02702 0.99395 0.98050 1.69892 1.57619 1.16546 1.19764 0.85488 0.78611 0.78792 0.79344 1.20956 1.23264 1.16236 1.22131 0.99643 0.81386 1.00285 0.89632 0.89435 0.91504 0.73823 0.83657 0.83178 0.83449 0.89267 0.90588 0.90043 0.91774 0.92199 0.91947 0.92616 0.91086 0.94343 0.91299 0.79924 0.93634 0.87706 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 8.16 71.98 0.59 -2.47 16 2 C 0.13 2.11 2.22 44.25 0.10 2.21 16 3 H 0.13 1.36 5.87 -2.39 -0.01 1.35 16 4 N -1.10 -17.40 5.27 -172.52 -0.91 -18.31 16 5 S 2.62 39.71 6.02 -56.49 -0.34 39.37 16 6 C -0.66 -4.56 10.78 113.37 1.22 -3.34 16 7 O -1.00 -22.64 18.08 -127.65 -2.31 -24.95 16 8 O -0.98 -20.91 17.08 -127.65 -2.18 -23.09 16 9 C 0.52 10.62 5.44 87.66 0.48 11.10 16 10 O -0.56 -14.32 14.99 -3.02 -0.05 -14.36 16 11 N -0.59 -12.05 1.68 -823.96 -1.39 -13.44 16 12 C 0.11 2.39 5.17 86.07 0.45 2.84 16 13 C -0.13 -2.71 5.56 30.65 0.17 -2.54 16 14 C -0.13 -3.02 5.49 30.68 0.17 -2.85 16 15 C -0.12 -2.75 5.15 30.73 0.16 -2.59 16 16 C -0.13 -3.71 4.91 30.88 0.15 -3.55 16 17 C 0.15 4.58 2.29 45.10 0.10 4.69 16 18 H 0.07 2.24 3.29 -2.39 -0.01 2.23 16 19 N -0.75 -29.13 4.93 -322.41 -1.59 -30.72 16 20 C -0.22 -11.21 10.37 84.03 0.87 -10.34 16 21 H 0.06 3.19 8.06 -2.91 -0.02 3.17 16 22 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 23 N -0.99 -60.57 13.97 21.65 0.30 -60.27 16 24 Si 0.95 41.65 27.73 68.60 1.90 43.55 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.31 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.24 -8.80 6.52 99.48 0.65 -8.16 16 28 C 0.09 1.90 4.99 86.75 0.43 2.33 16 29 H 0.09 1.46 3.55 -2.38 -0.01 1.45 16 30 H 0.09 1.55 7.39 -2.38 -0.02 1.53 16 31 H 0.07 1.19 8.11 -2.39 -0.02 1.17 16 32 H 0.43 7.15 8.05 -96.74 -0.78 6.37 16 33 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.15 0.57 8.14 -2.39 -0.02 0.56 16 35 H 0.15 0.56 7.44 -2.39 -0.02 0.54 16 36 H 0.09 2.02 6.07 -2.39 -0.01 2.01 16 37 H 0.08 1.57 8.04 -2.39 -0.02 1.55 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.51 6.39 -2.39 -0.02 1.50 16 40 H 0.06 1.69 5.47 -2.39 -0.01 1.67 16 41 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.55 3.50 -2.39 -0.01 1.54 16 44 H 0.04 1.35 8.10 -2.39 -0.02 1.33 16 45 H 0.07 1.72 6.20 -2.39 -0.01 1.71 16 46 H 0.37 13.41 5.66 -92.71 -0.53 12.88 16 47 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 48 H 0.10 1.76 4.41 -2.39 -0.01 1.75 16 49 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -76.20 369.29 -1.55 -77.75 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -0.35 Total: 32.08 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 5.35 Total: -7.62 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -3.58 Total: -122.73 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: -4.53 Total: -62.40 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.90 Total: 43.55 kcal Atomic # 16 Polarization: 39.71 SS G_CDS: -0.34 Total: 39.37 kcal Total: -76.20 -1.55 -77.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692328798.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.982 kcal (2) G-P(sol) polarization free energy of solvation -76.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds