Wall clock time and date at job start Wed Apr 1 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47424 * 2 1 4 4 N 1.46507 * 109.47275 * 119.99894 * 2 1 3 5 5 S 1.65603 * 119.99990 * 265.00248 * 4 2 1 6 6 C 1.81401 * 104.44863 * 64.99636 * 5 4 2 7 7 O 1.42102 * 104.27378 * 181.06735 * 5 4 2 8 8 O 1.42095 * 104.27391 * 308.92478 * 5 4 2 9 9 C 1.50702 * 109.47400 * 239.99967 * 2 1 3 10 10 O 1.21280 * 119.99975 * 256.52964 * 9 2 1 11 11 N 1.34777 * 119.99964 * 76.52547 * 9 2 1 12 12 C 1.46959 * 120.35312 * 183.24696 * 11 9 2 13 13 C 1.52332 * 109.08576 * 68.37841 * 12 11 9 14 14 C 1.53799 * 109.16491 * 72.70746 * 13 12 11 15 15 C 1.52453 * 109.41605 * 282.12544 * 14 13 12 16 16 C 1.53972 * 110.73259 * 113.72999 * 15 14 13 17 17 C 1.52879 * 109.71500 * 315.64557 * 16 15 14 18 18 H 1.08998 * 109.47838 * 47.09036 * 17 16 15 19 19 N 1.46497 * 109.48084 * 167.11657 * 17 16 15 20 20 C 1.36935 * 119.99769 * 274.99812 * 19 17 16 21 21 H 1.08003 * 120.00449 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00032 * 179.97438 * 20 19 17 23 23 N 1.31614 * 120.00175 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99895 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46873 * 90.00148 * 24 22 20 26 26 H 1.48501 * 109.47304 * 209.99965 * 24 22 20 27 27 H 1.48500 * 109.47256 * 330.00448 * 24 22 20 28 28 C 1.45336 * 120.35217 * 2.97082 * 11 9 2 29 29 H 1.09000 * 109.47090 * 293.60337 * 1 2 3 30 30 H 1.09005 * 109.46874 * 53.60005 * 1 2 3 31 31 H 1.09000 * 109.47480 * 173.60303 * 1 2 3 32 32 H 0.97000 * 119.99854 * 84.99329 * 4 2 1 33 33 H 1.09000 * 109.47156 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47138 * 300.00127 * 6 5 4 35 35 H 1.09004 * 109.47000 * 60.00319 * 6 5 4 36 36 H 1.09000 * 109.53322 * 188.26140 * 12 11 9 37 37 H 1.08998 * 109.53420 * 308.41723 * 12 11 9 38 38 H 1.09006 * 109.52209 * 192.60763 * 13 12 11 39 39 H 1.08999 * 109.52561 * 312.79786 * 13 12 11 40 40 H 1.08998 * 109.48220 * 42.10428 * 14 13 12 41 41 H 1.08994 * 109.48436 * 162.14360 * 14 13 12 42 42 H 1.09004 * 109.22567 * 234.04868 * 15 14 13 43 43 H 1.08993 * 109.22475 * 353.44786 * 15 14 13 44 44 H 1.09000 * 109.42970 * 75.72087 * 16 15 14 45 45 H 1.09004 * 109.42752 * 195.62048 * 16 15 14 46 46 H 0.96997 * 119.99894 * 94.99663 * 19 17 16 47 47 H 0.97003 * 120.00508 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.67898 * 343.07465 * 28 11 9 49 49 H 1.09001 * 109.67444 * 103.61629 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4122 0.1772 2.5506 6 6 0.8407 0.8990 3.0985 7 8 2.8605 -0.8029 3.4766 8 8 3.2874 1.1906 2.0751 9 6 2.0324 -0.7104 -1.2305 10 8 2.4652 -1.8401 -1.1442 11 7 2.0006 -0.0904 -2.4267 12 6 2.4219 -0.8004 -3.6425 13 6 1.4129 -1.8987 -3.9528 14 6 0.1175 -1.2597 -4.4811 15 6 -0.6805 -0.6918 -3.3128 16 6 -0.7526 0.8439 -3.3972 17 6 0.6252 1.4064 -3.7472 18 1 1.0471 0.8430 -4.5795 19 7 0.4957 2.8154 -4.1267 20 6 0.1767 3.1508 -5.4155 21 1 0.0202 2.3766 -6.1521 22 6 0.0534 4.4858 -5.7750 23 7 -0.2537 4.8082 -7.0136 24 14 0.3220 5.8249 -4.5006 25 1 1.7541 6.2175 -4.4894 26 1 -0.5123 7.0057 -4.8398 27 1 -0.0622 5.3161 -3.1594 28 6 1.5437 1.2855 -2.5289 29 1 -0.3633 0.4115 0.9417 30 1 -0.3633 0.6099 -0.8272 31 1 -0.3634 -1.0212 -0.1145 32 1 2.1109 -1.6562 1.1950 33 1 1.0076 1.4939 3.9964 34 1 0.4386 1.5352 2.3101 35 1 0.1315 0.1009 3.3185 36 1 2.4664 -0.1000 -4.4766 37 1 3.4058 -1.2418 -3.4844 38 1 1.8238 -2.5676 -4.7091 39 1 1.1973 -2.4623 -3.0452 40 1 0.3651 -0.4575 -5.1762 41 1 -0.4773 -2.0151 -4.9945 42 1 -1.6908 -1.1003 -3.3359 43 1 -0.1994 -0.9770 -2.3773 44 1 -1.4680 1.1315 -4.1676 45 1 -1.0738 1.2452 -2.4360 46 1 0.6359 3.5107 -3.4651 47 1 -0.3395 5.7411 -7.2650 48 1 0.9946 1.5578 -1.6276 49 1 2.4002 1.9484 -2.6519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692328799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:42 Heat of formation + Delta-G solvation = -78.398291 kcal Electronic energy + Delta-G solvation = -31295.709915 eV Core-core repulsion = 27193.074386 eV Total energy + Delta-G solvation = -4102.635528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.86723 -38.06163 -37.40807 -36.26502 -35.92738 -34.77906 -34.21289 -32.33575 -30.94424 -30.10848 -29.64748 -27.65608 -26.42219 -24.65798 -23.20219 -22.38799 -21.72439 -19.97440 -19.63318 -18.96246 -18.28247 -17.89287 -17.02398 -16.55253 -16.53163 -15.87109 -15.78251 -15.28257 -14.86115 -14.57584 -14.26138 -14.03719 -13.96317 -13.85235 -13.58752 -13.50717 -13.32443 -12.90032 -12.70643 -12.62459 -12.42588 -12.38488 -12.34350 -12.15685 -12.03047 -11.87733 -11.57753 -11.38514 -11.19484 -11.11586 -10.96979 -10.80027 -10.47128 -10.39741 -10.29380 -10.23058 -9.95242 -9.68949 -9.55900 -9.01197 -8.48729 -7.39313 -5.86693 -3.24234 -0.09660 2.26560 2.49657 2.96192 3.29099 3.32386 3.39362 3.47098 3.84912 4.13616 4.36145 4.49724 4.52712 4.58058 4.67469 4.80888 4.87349 4.98490 5.07541 5.13437 5.21703 5.24260 5.28064 5.32745 5.46420 5.50881 5.56613 5.58389 5.66985 5.71264 5.82407 5.87306 5.98345 6.06003 6.09480 6.19429 6.32968 6.42565 6.47870 6.56160 6.67868 6.78220 6.87387 7.38957 7.86897 8.05028 8.31141 9.08443 9.80758 9.98474 11.31145 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011825 B = 0.003745 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.349710 B = 7473.946316 C = 8979.120316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.124 3.876 3 H 0.115 0.885 4 N -1.101 6.101 5 S 2.614 3.386 6 C -0.676 4.676 7 O -0.956 6.956 8 O -0.954 6.954 9 C 0.520 3.480 10 O -0.535 6.535 11 N -0.591 5.591 12 C 0.114 3.886 13 C -0.135 4.135 14 C -0.128 4.128 15 C -0.120 4.120 16 C -0.137 4.137 17 C 0.159 3.841 18 H 0.079 0.921 19 N -0.746 5.746 20 C -0.246 4.246 21 H 0.091 0.909 22 C 0.008 3.992 23 N -0.931 5.931 24 Si 0.883 3.117 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.083 3.917 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.426 0.574 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.361 0.639 47 H 0.260 0.740 48 H 0.080 0.920 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 -11.119 16.881 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.012 3.988 3 H 0.132 0.868 4 N -0.862 5.862 5 S 2.706 3.294 6 C -0.826 4.826 7 O -0.947 6.947 8 O -0.944 6.944 9 C 0.305 3.695 10 O -0.412 6.412 11 N -0.324 5.324 12 C -0.008 4.008 13 C -0.173 4.173 14 C -0.165 4.165 15 C -0.159 4.159 16 C -0.177 4.177 17 C 0.050 3.950 18 H 0.097 0.903 19 N -0.389 5.389 20 C -0.376 4.376 21 H 0.109 0.891 22 C -0.188 4.188 23 N -0.578 5.578 24 Si 0.713 3.287 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.041 4.041 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.264 0.736 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.193 0.807 47 H 0.071 0.929 48 H 0.098 0.902 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.964 -11.418 17.031 20.527 hybrid contribution -0.749 0.959 0.723 1.415 sum 0.215 -10.459 17.753 20.606 Atomic orbital electron populations 1.22636 0.92725 1.04742 1.04244 1.20749 0.95640 0.97413 0.84954 0.86752 1.55437 1.83944 1.20916 1.25907 1.04751 0.76689 0.74581 0.73394 1.30665 1.24490 1.14320 1.13148 1.93628 1.79480 1.58837 1.62717 1.93639 1.60752 1.60740 1.79225 1.20240 0.78552 0.86614 0.84098 1.90664 1.46421 1.18541 1.85538 1.47688 1.64074 1.13752 1.06844 1.21614 0.97685 0.94866 0.86656 1.22029 0.95994 0.97663 1.01631 1.21833 0.95861 1.00352 0.98494 1.21789 0.99196 0.96398 0.98470 1.22489 1.00387 0.93489 1.01382 1.20836 0.92607 0.87095 0.94491 0.90344 1.42694 1.85835 1.00692 1.09676 1.18987 1.40321 0.92937 0.85311 0.89136 1.24663 1.01382 0.96806 0.95933 1.69690 1.54360 1.17272 1.16468 0.86591 0.77976 0.82674 0.81445 1.20986 1.21776 1.20301 1.22177 0.99230 0.81785 1.00883 0.90931 0.89144 0.90603 0.73649 0.85156 0.85014 0.84973 0.88732 0.91095 0.91278 0.90908 0.90245 0.92575 0.93192 0.92335 0.90897 0.93057 0.80665 0.92946 0.90173 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 8.17 37.16 0.30 -1.09 16 2 C 0.12 1.20 2.35 -69.08 -0.16 1.04 16 3 H 0.11 1.03 6.40 -51.93 -0.33 0.70 16 4 N -1.10 -9.98 5.26 -5.88 -0.03 -10.02 16 5 S 2.61 22.80 6.08 -107.50 -0.65 22.15 16 6 C -0.68 -3.10 9.89 101.05 1.00 -2.10 16 7 O -0.96 -11.43 18.08 -57.54 -1.04 -12.47 16 8 O -0.95 -11.97 17.39 -57.54 -1.00 -12.97 16 9 C 0.52 6.55 5.46 -10.98 -0.06 6.49 16 10 O -0.53 -8.00 14.87 5.56 0.08 -7.92 16 11 N -0.59 -7.35 1.69 -174.61 -0.30 -7.64 16 12 C 0.11 1.40 5.18 -4.13 -0.02 1.38 16 13 C -0.13 -1.59 5.56 -26.66 -0.15 -1.73 16 14 C -0.13 -1.58 5.49 -26.60 -0.15 -1.73 16 15 C -0.12 -1.48 5.30 -26.50 -0.14 -1.62 16 16 C -0.14 -1.98 4.97 -26.29 -0.13 -2.11 16 17 C 0.16 2.52 2.29 -67.97 -0.16 2.36 16 18 H 0.08 1.30 3.29 -51.93 -0.17 1.13 16 19 N -0.75 -15.29 4.93 -53.46 -0.26 -15.56 16 20 C -0.25 -6.28 10.38 -15.06 -0.16 -6.43 16 21 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 22 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 23 N -0.93 -27.74 13.97 55.49 0.78 -26.96 16 24 Si 0.88 20.61 27.73 -169.99 -4.71 15.90 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -5.94 6.52 56.52 0.37 -5.57 16 28 C 0.08 1.08 4.96 -4.64 -0.02 1.05 16 29 H 0.07 0.35 5.72 -51.93 -0.30 0.06 16 30 H 0.09 0.74 3.85 -51.93 -0.20 0.54 16 31 H 0.07 0.58 7.93 -51.93 -0.41 0.17 16 32 H 0.43 3.92 8.05 -34.47 -0.28 3.64 16 33 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.13 0.47 6.91 -51.93 -0.36 0.11 16 35 H 0.13 0.40 8.14 -51.92 -0.42 -0.03 16 36 H 0.09 1.19 6.07 -51.93 -0.32 0.88 16 37 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.94 6.30 -51.93 -0.33 0.61 16 40 H 0.08 1.12 5.47 -51.93 -0.28 0.84 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.68 3.73 -51.93 -0.19 0.48 16 44 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 45 H 0.05 0.67 6.16 -51.93 -0.32 0.35 16 46 H 0.36 7.26 5.66 -40.82 -0.23 7.03 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.08 0.87 4.18 -51.93 -0.22 0.65 16 49 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -35.33 367.34 -8.45 -43.78 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.90 Total: 10.53 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 0.06 Total: -4.36 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.19 Total: -60.18 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -1.96 Total: -33.36 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.71 Total: 15.90 kcal Atomic # 16 Polarization: 22.80 SS G_CDS: -0.65 Total: 22.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.33 -8.45 -43.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692328799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.623 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds