Wall clock time and date at job start Wed Apr 1 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47050 * 2 1 4 4 N 1.46501 * 109.47154 * 120.00567 * 2 1 3 5 5 S 1.65601 * 119.99902 * 265.00059 * 4 2 1 6 6 C 1.81404 * 104.44659 * 64.99799 * 5 4 2 7 7 O 1.42096 * 104.27595 * 181.06795 * 5 4 2 8 8 O 1.42100 * 104.27690 * 308.92855 * 5 4 2 9 9 C 1.50702 * 109.47094 * 240.00370 * 2 1 3 10 10 O 1.21275 * 120.00102 * 262.38359 * 9 2 1 11 11 N 1.34782 * 119.99875 * 82.38402 * 9 2 1 12 12 C 1.46927 * 120.62944 * 174.91114 * 11 9 2 13 13 C 1.53194 * 108.89153 * 233.51593 * 12 11 9 14 14 C 1.53068 * 109.29601 * 305.57912 * 13 12 11 15 15 C 1.53038 * 109.65826 * 61.14984 * 14 13 12 16 16 H 1.09000 * 109.49331 * 58.65539 * 15 14 13 17 17 C 1.53005 * 109.49749 * 178.74792 * 15 14 13 18 18 C 1.53001 * 109.47169 * 294.84200 * 17 15 14 19 19 N 1.46496 * 109.46831 * 179.97438 * 18 17 15 20 20 C 1.36946 * 119.99851 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99651 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00206 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99951 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00175 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47016 * 89.99855 * 24 22 20 26 26 H 1.48502 * 109.46963 * 209.99795 * 24 22 20 27 27 H 1.48498 * 109.46862 * 329.99745 * 24 22 20 28 28 C 1.46924 * 120.63134 * 354.89009 * 11 9 2 29 29 H 1.09001 * 109.46663 * 181.79190 * 1 2 3 30 30 H 1.08993 * 109.46769 * 301.79456 * 1 2 3 31 31 H 1.09005 * 109.46851 * 61.80021 * 1 2 3 32 32 H 0.97004 * 119.99735 * 84.99748 * 4 2 1 33 33 H 1.08997 * 109.47424 * 60.00464 * 6 5 4 34 34 H 1.09005 * 109.46683 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.47401 * 299.99485 * 6 5 4 36 36 H 1.09002 * 109.58694 * 353.37643 * 12 11 9 37 37 H 1.08997 * 109.58739 * 113.65451 * 12 11 9 38 38 H 1.09000 * 109.49667 * 65.39066 * 13 12 11 39 39 H 1.09004 * 109.49488 * 185.48297 * 13 12 11 40 40 H 1.09009 * 109.34605 * 301.13338 * 14 13 12 41 41 H 1.08992 * 109.45431 * 181.24494 * 14 13 12 42 42 H 1.09005 * 109.46995 * 54.84362 * 17 15 14 43 43 H 1.09000 * 109.47268 * 174.83955 * 17 15 14 44 44 H 1.08997 * 109.47092 * 300.00243 * 18 17 15 45 45 H 1.09000 * 109.47225 * 59.99729 * 18 17 15 46 46 H 0.96992 * 120.00505 * 0.02562 * 19 18 17 47 47 H 0.96994 * 120.00038 * 179.97438 * 23 22 20 48 48 H 1.08996 * 109.58431 * 246.20053 * 28 11 9 49 49 H 1.09002 * 109.58419 * 6.62472 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 16 2.4122 0.1769 2.5505 6 6 0.8407 0.8986 3.0985 7 8 2.8606 -0.8032 3.4765 8 8 3.2875 1.1905 2.0752 9 6 2.0324 -0.7103 -1.2305 10 8 2.3658 -1.8745 -1.1650 11 7 2.1112 -0.0518 -2.4038 12 6 2.7019 -0.6952 -3.5853 13 6 3.8031 0.2108 -4.1449 14 6 3.2270 1.6046 -4.4067 15 6 2.7216 2.2076 -3.0941 16 1 3.5426 2.2628 -2.3793 17 6 2.1752 3.6128 -3.3547 18 6 3.3157 4.5284 -3.8038 19 7 2.7924 5.8736 -4.0539 20 6 3.6352 6.8700 -4.4689 21 1 4.6857 6.6642 -4.6114 22 6 3.1394 8.1448 -4.7054 23 7 1.8591 8.3958 -4.5312 24 14 4.2890 9.5038 -5.2722 25 1 4.3434 9.5192 -6.7560 26 1 3.7877 10.8127 -4.7816 27 1 5.6495 9.2597 -4.7293 28 6 1.6075 1.3231 -2.5259 29 1 -0.3633 -1.0272 0.0321 30 1 -0.3632 0.5414 0.8734 31 1 -0.3633 0.4856 -0.9057 32 1 2.1110 -1.6563 1.1947 33 1 0.1315 0.1007 3.3184 34 1 1.0077 1.4935 3.9965 35 1 0.4387 1.5351 2.3102 36 1 3.1289 -1.6573 -3.3022 37 1 1.9325 -0.8457 -4.3425 38 1 4.6156 0.2850 -3.4221 39 1 4.1817 -0.2098 -5.0766 40 1 2.4001 1.5267 -5.1127 41 1 4.0029 2.2452 -4.8258 42 1 1.4159 3.5683 -4.1357 43 1 1.7324 4.0060 -2.4396 44 1 4.0749 4.5728 -3.0229 45 1 3.7585 4.1352 -4.7189 46 1 1.8489 6.0586 -3.9255 47 1 1.5128 9.2867 -4.6961 48 1 0.7494 1.3395 -3.1977 49 1 1.3125 1.6926 -1.5438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698685172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:08 Heat of formation + Delta-G solvation = -102.633464 kcal Electronic energy + Delta-G solvation = -29560.296411 eV Core-core repulsion = 25456.609967 eV Total energy + Delta-G solvation = -4103.686444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.75342 -38.24997 -37.46199 -36.31143 -35.99045 -35.28994 -33.44949 -32.50631 -30.81190 -30.37029 -29.78269 -27.59940 -26.22161 -24.20175 -24.04380 -22.19415 -21.48068 -20.13578 -20.01853 -19.48888 -18.39964 -17.22952 -17.04597 -16.85241 -16.56739 -15.89254 -15.61989 -15.08152 -14.95740 -14.83022 -14.39410 -14.17728 -14.05730 -13.83828 -13.61986 -13.56142 -13.30728 -13.11012 -13.01592 -12.85325 -12.65923 -12.43898 -12.39988 -12.29715 -12.18627 -12.11292 -11.48508 -11.42166 -11.33742 -11.03457 -10.92607 -10.80028 -10.58162 -10.51627 -10.41506 -10.20765 -10.03793 -9.81267 -9.69280 -8.89947 -8.81828 -6.91316 -5.76871 -3.05127 -0.15492 2.11251 2.34329 2.69931 3.42072 3.43640 3.48957 3.50609 3.78942 3.93321 4.29506 4.36427 4.47619 4.50250 4.55259 4.60026 4.75107 4.78633 4.82771 4.87250 5.01122 5.12984 5.17987 5.24851 5.34510 5.38497 5.48046 5.53665 5.58691 5.61450 5.66550 5.74821 5.83388 5.97945 6.01925 6.19619 6.22335 6.29982 6.38011 6.42008 6.56918 6.84826 6.89408 7.08219 7.70375 7.80271 8.42700 9.53646 10.12101 10.46337 11.46217 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.002524 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.767948 B =11092.852939 C =12598.393652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.124 3.876 3 H 0.118 0.882 4 N -1.103 6.103 5 S 2.613 3.387 6 C -0.675 4.675 7 O -0.955 6.955 8 O -0.949 6.949 9 C 0.521 3.479 10 O -0.536 6.536 11 N -0.605 5.605 12 C 0.112 3.888 13 C -0.135 4.135 14 C -0.118 4.118 15 C -0.100 4.100 16 H 0.078 0.922 17 C -0.120 4.120 18 C 0.153 3.847 19 N -0.735 5.735 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.104 3.896 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.426 0.574 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.017 0.983 45 H 0.021 0.979 46 H 0.383 0.617 47 H 0.255 0.745 48 H 0.078 0.922 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.409 -21.333 10.570 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.012 3.988 3 H 0.136 0.864 4 N -0.864 5.864 5 S 2.704 3.296 6 C -0.825 4.825 7 O -0.946 6.946 8 O -0.939 6.939 9 C 0.307 3.693 10 O -0.413 6.413 11 N -0.338 5.338 12 C -0.010 4.010 13 C -0.173 4.173 14 C -0.155 4.155 15 C -0.120 4.120 16 H 0.097 0.903 17 C -0.158 4.158 18 C 0.026 3.974 19 N -0.379 5.379 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.584 5.584 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.018 4.018 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.263 0.737 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.035 0.965 45 H 0.038 0.962 46 H 0.216 0.784 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.233 -21.599 10.940 24.771 hybrid contribution -0.447 0.758 -0.410 0.971 sum -5.679 -20.841 10.530 24.031 Atomic orbital electron populations 1.22433 0.92618 1.04386 1.04066 1.20769 0.95714 0.97503 0.84765 0.86422 1.55512 1.83979 1.20920 1.25957 1.04846 0.76746 0.74619 0.73389 1.30654 1.24345 1.14265 1.13269 1.93632 1.79432 1.58901 1.62598 1.93663 1.60599 1.60544 1.79121 1.20381 0.77900 0.86954 0.84114 1.90674 1.49529 1.16297 1.84805 1.48102 1.60207 1.15319 1.10140 1.21648 0.95969 0.97018 0.86383 1.21949 0.97954 0.96059 1.01375 1.21653 1.01445 0.95381 0.97025 1.21503 0.97852 0.94713 0.97889 0.90323 1.21716 0.99489 0.92893 1.01724 1.20671 0.93941 0.85834 0.96991 1.42369 1.09031 1.04941 1.81515 1.19239 0.91463 0.89334 1.36881 0.91231 1.24735 0.96090 0.97619 1.02643 1.69657 1.11840 1.21102 1.55781 0.86189 0.79877 0.81797 0.78347 1.21747 1.21773 1.20744 1.22057 0.97230 0.80186 1.02351 0.90618 0.90734 0.90066 0.73682 0.85024 0.85006 0.85029 0.89199 0.91318 0.91466 0.90599 0.91655 0.90465 0.91655 0.91664 0.96474 0.96159 0.78367 0.93556 0.90384 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.87 9.20 37.16 0.34 -0.52 16 2 C 0.12 0.97 2.35 -69.08 -0.16 0.81 16 3 H 0.12 0.86 5.99 -51.93 -0.31 0.54 16 4 N -1.10 -8.67 5.29 -5.88 -0.03 -8.70 16 5 S 2.61 20.97 6.08 -107.50 -0.65 20.32 16 6 C -0.68 -2.56 10.08 101.05 1.02 -1.55 16 7 O -0.96 -10.90 18.08 -57.54 -1.04 -11.94 16 8 O -0.95 -11.53 17.39 -57.54 -1.00 -12.53 16 9 C 0.52 5.55 6.92 -10.98 -0.08 5.47 16 10 O -0.54 -7.25 15.50 5.56 0.09 -7.17 16 11 N -0.60 -5.87 2.97 -172.77 -0.51 -6.38 16 12 C 0.11 1.05 6.41 -3.71 -0.02 1.02 16 13 C -0.14 -1.26 6.09 -26.60 -0.16 -1.43 16 14 C -0.12 -1.25 4.95 -26.68 -0.13 -1.38 16 15 C -0.10 -1.11 2.34 -90.50 -0.21 -1.32 16 16 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 17 C -0.12 -1.69 4.80 -26.73 -0.13 -1.81 16 18 C 0.15 2.94 6.02 -4.04 -0.02 2.91 16 19 N -0.73 -18.33 5.60 -59.91 -0.34 -18.66 16 20 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 24 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 28 C 0.10 0.91 4.96 -3.72 -0.02 0.89 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.20 5.81 -51.93 -0.30 -0.10 16 31 H 0.08 0.35 7.06 -51.93 -0.37 -0.02 16 32 H 0.43 3.42 8.06 -34.48 -0.28 3.14 16 33 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 35 H 0.13 0.33 6.74 -51.93 -0.35 -0.02 16 36 H 0.09 0.93 7.04 -51.93 -0.37 0.56 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.08 0.93 6.51 -51.93 -0.34 0.59 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.39 6.54 -51.93 -0.34 0.05 16 46 H 0.38 9.94 7.67 -40.82 -0.31 9.62 16 47 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.09 0.60 5.01 -51.93 -0.26 0.34 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -38.24 394.74 -9.51 -47.75 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.84 Total: 5.58 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 0.18 Total: -4.24 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.16 Total: -61.05 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.95 Total: -31.64 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 20.97 SS G_CDS: -0.65 Total: 20.32 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.24 -9.51 -47.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698685172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.887 kcal (2) G-P(sol) polarization free energy of solvation -38.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds