Wall clock time and date at job start Wed Apr 1 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47050 * 2 1 4 4 N 1.46501 * 109.47154 * 120.00567 * 2 1 3 5 5 S 1.65601 * 119.99902 * 265.00059 * 4 2 1 6 6 C 1.81404 * 104.44659 * 64.99799 * 5 4 2 7 7 O 1.42096 * 104.27595 * 181.06795 * 5 4 2 8 8 O 1.42100 * 104.27690 * 308.92855 * 5 4 2 9 9 C 1.50702 * 109.47094 * 240.00370 * 2 1 3 10 10 O 1.21275 * 120.00102 * 262.38359 * 9 2 1 11 11 N 1.34782 * 119.99875 * 82.38402 * 9 2 1 12 12 C 1.46927 * 120.62944 * 174.91114 * 11 9 2 13 13 C 1.53194 * 108.89153 * 233.51593 * 12 11 9 14 14 C 1.53068 * 109.29601 * 305.57912 * 13 12 11 15 15 C 1.53038 * 109.65826 * 61.14984 * 14 13 12 16 16 H 1.09000 * 109.49331 * 58.65539 * 15 14 13 17 17 C 1.53005 * 109.49749 * 178.74792 * 15 14 13 18 18 C 1.53001 * 109.47169 * 294.84200 * 17 15 14 19 19 N 1.46496 * 109.46831 * 179.97438 * 18 17 15 20 20 C 1.36946 * 119.99851 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99651 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00206 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99951 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00175 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47016 * 89.99855 * 24 22 20 26 26 H 1.48502 * 109.46963 * 209.99795 * 24 22 20 27 27 H 1.48498 * 109.46862 * 329.99745 * 24 22 20 28 28 C 1.46924 * 120.63134 * 354.89009 * 11 9 2 29 29 H 1.09001 * 109.46663 * 181.79190 * 1 2 3 30 30 H 1.08993 * 109.46769 * 301.79456 * 1 2 3 31 31 H 1.09005 * 109.46851 * 61.80021 * 1 2 3 32 32 H 0.97004 * 119.99735 * 84.99748 * 4 2 1 33 33 H 1.08997 * 109.47424 * 60.00464 * 6 5 4 34 34 H 1.09005 * 109.46683 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.47401 * 299.99485 * 6 5 4 36 36 H 1.09002 * 109.58694 * 353.37643 * 12 11 9 37 37 H 1.08997 * 109.58739 * 113.65451 * 12 11 9 38 38 H 1.09000 * 109.49667 * 65.39066 * 13 12 11 39 39 H 1.09004 * 109.49488 * 185.48297 * 13 12 11 40 40 H 1.09009 * 109.34605 * 301.13338 * 14 13 12 41 41 H 1.08992 * 109.45431 * 181.24494 * 14 13 12 42 42 H 1.09005 * 109.46995 * 54.84362 * 17 15 14 43 43 H 1.09000 * 109.47268 * 174.83955 * 17 15 14 44 44 H 1.08997 * 109.47092 * 300.00243 * 18 17 15 45 45 H 1.09000 * 109.47225 * 59.99729 * 18 17 15 46 46 H 0.96992 * 120.00505 * 0.02562 * 19 18 17 47 47 H 0.96994 * 120.00038 * 179.97438 * 23 22 20 48 48 H 1.08996 * 109.58431 * 246.20053 * 28 11 9 49 49 H 1.09002 * 109.58419 * 6.62472 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 16 2.4122 0.1769 2.5505 6 6 0.8407 0.8986 3.0985 7 8 2.8606 -0.8032 3.4765 8 8 3.2875 1.1905 2.0752 9 6 2.0324 -0.7103 -1.2305 10 8 2.3658 -1.8745 -1.1650 11 7 2.1112 -0.0518 -2.4038 12 6 2.7019 -0.6952 -3.5853 13 6 3.8031 0.2108 -4.1449 14 6 3.2270 1.6046 -4.4067 15 6 2.7216 2.2076 -3.0941 16 1 3.5426 2.2628 -2.3793 17 6 2.1752 3.6128 -3.3547 18 6 3.3157 4.5284 -3.8038 19 7 2.7924 5.8736 -4.0539 20 6 3.6352 6.8700 -4.4689 21 1 4.6857 6.6642 -4.6114 22 6 3.1394 8.1448 -4.7054 23 7 1.8591 8.3958 -4.5312 24 14 4.2890 9.5038 -5.2722 25 1 4.3434 9.5192 -6.7560 26 1 3.7877 10.8127 -4.7816 27 1 5.6495 9.2597 -4.7293 28 6 1.6075 1.3231 -2.5259 29 1 -0.3633 -1.0272 0.0321 30 1 -0.3632 0.5414 0.8734 31 1 -0.3633 0.4856 -0.9057 32 1 2.1110 -1.6563 1.1947 33 1 0.1315 0.1007 3.3184 34 1 1.0077 1.4935 3.9965 35 1 0.4387 1.5351 2.3102 36 1 3.1289 -1.6573 -3.3022 37 1 1.9325 -0.8457 -4.3425 38 1 4.6156 0.2850 -3.4221 39 1 4.1817 -0.2098 -5.0766 40 1 2.4001 1.5267 -5.1127 41 1 4.0029 2.2452 -4.8258 42 1 1.4159 3.5683 -4.1357 43 1 1.7324 4.0060 -2.4396 44 1 4.0749 4.5728 -3.0229 45 1 3.7585 4.1352 -4.7189 46 1 1.8489 6.0586 -3.9255 47 1 1.5128 9.2867 -4.6961 48 1 0.7494 1.3395 -3.1977 49 1 1.3125 1.6926 -1.5438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698685172.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:07 Heat of formation + Delta-G solvation = -133.297065 kcal Electronic energy + Delta-G solvation = -29561.626085 eV Core-core repulsion = 25456.609967 eV Total energy + Delta-G solvation = -4105.016118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.53641 -39.14764 -38.22146 -37.06817 -36.91137 -36.56449 -34.83416 -33.49871 -32.47599 -30.86751 -30.20095 -29.02750 -26.95651 -25.77306 -24.83022 -23.50300 -22.57331 -21.17719 -20.63530 -20.23944 -19.17805 -18.99097 -17.89917 -17.65338 -17.21673 -16.79037 -16.52607 -16.32708 -15.96034 -15.75153 -15.60833 -15.30910 -14.96066 -14.77072 -14.51968 -14.37040 -14.32645 -13.97888 -13.90232 -13.72495 -13.31029 -13.22940 -13.18480 -13.14453 -12.98529 -12.87816 -12.85283 -12.64613 -12.43352 -12.37166 -12.08950 -11.99241 -11.95217 -11.81462 -11.64243 -11.46009 -11.33445 -10.95046 -10.86342 -10.50914 -9.67021 -8.95919 -7.93985 -5.21877 -0.73019 1.39855 1.48618 1.49682 1.58269 1.67129 1.98364 2.57464 2.86440 3.20879 3.27581 3.39759 3.68595 3.75786 3.88044 3.92079 4.01568 4.03306 4.07003 4.15393 4.21648 4.33014 4.37983 4.43738 4.56442 4.58395 4.69209 4.72258 4.79413 4.86363 4.88155 4.91607 4.96199 4.99453 5.04339 5.13049 5.26144 5.29704 5.36135 5.46580 5.49504 5.54151 5.57738 5.93724 6.29794 6.31707 7.01607 7.35964 8.13320 8.36515 9.29487 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011607 B = 0.002524 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.767948 B =11092.852939 C =12598.393652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.120 3.880 3 H 0.123 0.877 4 N -1.105 6.105 5 S 2.612 3.388 6 C -0.649 4.649 7 O -0.998 6.998 8 O -1.001 7.001 9 C 0.513 3.487 10 O -0.573 6.573 11 N -0.604 5.604 12 C 0.111 3.889 13 C -0.127 4.127 14 C -0.116 4.116 15 C -0.093 4.093 16 H 0.064 0.936 17 C -0.105 4.105 18 C 0.150 3.850 19 N -0.747 5.747 20 C -0.247 4.247 21 H 0.071 0.929 22 C -0.074 4.074 23 N -0.967 5.967 24 Si 0.970 3.030 25 H -0.286 1.286 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.105 3.895 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.424 0.576 33 H 0.159 0.841 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.008 0.992 45 H 0.022 0.978 46 H 0.376 0.624 47 H 0.252 0.748 48 H 0.099 0.901 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.152 -21.347 10.804 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.009 3.991 3 H 0.141 0.859 4 N -0.865 5.865 5 S 2.709 3.291 6 C -0.804 4.804 7 O -0.989 6.989 8 O -0.991 6.991 9 C 0.300 3.700 10 O -0.452 6.452 11 N -0.336 5.336 12 C -0.012 4.012 13 C -0.166 4.166 14 C -0.154 4.154 15 C -0.113 4.113 16 H 0.082 0.918 17 C -0.144 4.144 18 C 0.023 3.977 19 N -0.390 5.390 20 C -0.379 4.379 21 H 0.089 0.911 22 C -0.266 4.266 23 N -0.618 5.618 24 Si 0.799 3.201 25 H -0.213 1.213 26 H -0.220 1.220 27 H -0.198 1.198 28 C -0.017 4.017 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.260 0.740 33 H 0.177 0.823 34 H 0.167 0.833 35 H 0.173 0.827 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.026 0.974 45 H 0.040 0.960 46 H 0.208 0.792 47 H 0.061 0.939 48 H 0.117 0.883 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.912 -21.651 11.152 25.316 hybrid contribution 0.100 0.726 -0.481 0.877 sum -6.812 -20.925 10.671 24.457 Atomic orbital electron populations 1.22500 0.89855 1.05025 1.05971 1.20965 0.97816 0.97090 0.83206 0.85906 1.55387 1.84259 1.20670 1.26165 1.04577 0.78216 0.73561 0.72698 1.30430 1.20177 1.15242 1.14504 1.93570 1.81505 1.60334 1.63503 1.93595 1.64152 1.61463 1.79880 1.20970 0.77307 0.86742 0.85015 1.90654 1.51202 1.17971 1.85397 1.48180 1.59803 1.15526 1.10085 1.21678 0.96392 0.96329 0.86763 1.21876 0.97492 0.95503 1.01688 1.21625 1.01300 0.95562 0.96881 1.21386 0.98301 0.93598 0.98001 0.91762 1.21553 0.97606 0.93293 1.01907 1.20854 0.95674 0.84376 0.96753 1.42589 1.08483 1.06557 1.81348 1.19613 0.91963 0.90325 1.35967 0.91133 1.25520 0.97598 0.99891 1.03592 1.69794 1.13401 1.21331 1.57263 0.85186 0.78344 0.78685 0.77837 1.21317 1.22007 1.19758 1.22134 0.96548 0.79048 1.03924 0.90747 0.87932 0.88997 0.73981 0.82302 0.83335 0.82730 0.90488 0.89497 0.93048 0.89104 0.90556 0.92260 0.91035 0.91182 0.97365 0.96000 0.79232 0.93938 0.88281 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 9.20 71.98 0.66 -0.48 16 2 C 0.12 1.68 2.35 44.25 0.10 1.79 16 3 H 0.12 1.56 5.99 -2.39 -0.01 1.55 16 4 N -1.11 -16.67 5.29 -172.51 -0.91 -17.59 16 5 S 2.61 40.47 6.08 -56.49 -0.34 40.13 16 6 C -0.65 -2.50 10.08 113.37 1.14 -1.36 16 7 O -1.00 -23.28 18.08 -127.65 -2.31 -25.59 16 8 O -1.00 -24.68 17.39 -127.65 -2.22 -26.90 16 9 C 0.51 10.49 6.92 87.66 0.61 11.10 16 10 O -0.57 -15.62 15.50 -3.01 -0.05 -15.67 16 11 N -0.60 -10.84 2.97 -818.92 -2.44 -13.27 16 12 C 0.11 1.94 6.41 86.36 0.55 2.50 16 13 C -0.13 -2.28 6.09 30.68 0.19 -2.10 16 14 C -0.12 -2.33 4.95 30.63 0.15 -2.18 16 15 C -0.09 -1.94 2.34 -10.72 -0.03 -1.96 16 16 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 17 C -0.11 -2.81 4.80 30.60 0.15 -2.67 16 18 C 0.15 5.70 6.02 86.38 0.52 6.22 16 19 N -0.75 -37.27 5.60 -343.46 -1.92 -39.19 16 20 C -0.25 -13.79 9.99 84.03 0.84 -12.95 16 21 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 22 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 23 N -0.97 -58.22 13.06 21.65 0.28 -57.94 16 24 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 27 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 28 C 0.11 1.57 4.96 86.36 0.43 2.00 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.08 5.81 -2.39 -0.01 0.06 16 31 H 0.09 0.43 7.06 -2.38 -0.02 0.41 16 32 H 0.42 6.93 8.06 -96.74 -0.78 6.15 16 33 H 0.16 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.15 0.01 6.74 -2.39 -0.02 0.00 16 36 H 0.08 1.58 7.04 -2.39 -0.02 1.57 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.06 1.40 6.51 -2.39 -0.02 1.39 16 42 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.02 0.84 6.54 -2.39 -0.02 0.82 16 46 H 0.38 19.53 7.67 -92.71 -0.71 18.82 16 47 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 48 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.11 1.16 5.01 -2.39 -0.01 1.15 16 Total: -1.00 -84.80 394.74 -2.61 -87.42 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: -0.52 Total: 24.51 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 5.78 Total: -3.82 kcal Atomic # 7 Polarization: -123.00 SS G_CDS: -4.99 Total: -127.99 kcal Atomic # 8 Polarization: -63.59 SS G_CDS: -4.57 Total: -68.16 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 40.47 SS G_CDS: -0.34 Total: 40.13 kcal Total: -84.80 -2.61 -87.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698685172.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.880 kcal (2) G-P(sol) polarization free energy of solvation -84.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds