Wall clock time and date at job start Wed Apr 1 2020 05:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.49787 * 2 1 4 4 C 1.53034 * 109.49881 * 239.90115 * 2 1 3 5 5 C 1.53042 * 109.53694 * 178.68649 * 4 2 1 6 6 C 1.53188 * 109.31416 * 61.36144 * 5 4 2 7 7 N 1.46917 * 108.77949 * 305.36780 * 6 5 4 8 8 C 1.34779 * 120.63149 * 233.61266 * 7 6 5 9 9 O 1.21290 * 119.99891 * 185.92918 * 8 7 6 10 10 C 1.50693 * 120.00102 * 5.91976 * 8 7 6 11 11 S 1.81401 * 109.47193 * 183.65268 * 10 8 7 12 12 O 1.42095 * 110.54781 * 287.93816 * 11 10 8 13 13 O 1.42107 * 110.54306 * 64.69083 * 11 10 8 14 14 N 1.65605 * 104.44864 * 176.31232 * 11 10 8 15 15 C 1.46507 * 119.99808 * 90.00438 * 14 11 10 16 16 C 1.46496 * 120.00138 * 269.99824 * 14 11 10 17 17 C 1.46930 * 118.74151 * 53.60309 * 7 6 5 18 18 H 1.09006 * 109.58463 * 66.18180 * 17 7 6 19 19 C 1.53004 * 109.70676 * 186.53830 * 17 7 6 20 20 N 1.46492 * 109.46935 * 57.86528 * 19 17 7 21 21 C 1.36944 * 119.99968 * 174.60978 * 20 19 17 22 22 H 1.08002 * 119.99874 * 5.01112 * 21 20 19 23 23 C 1.38812 * 120.00033 * 185.01468 * 21 20 19 24 24 N 1.31618 * 119.99785 * 182.78287 * 23 21 20 25 25 Si 1.86796 * 120.00022 * 2.77383 * 23 21 20 26 26 H 1.48499 * 109.46888 * 89.34133 * 25 23 21 27 27 H 1.48505 * 109.47067 * 209.33678 * 25 23 21 28 28 H 1.48494 * 109.47559 * 329.34472 * 25 23 21 29 29 H 1.08994 * 109.47633 * 299.94023 * 1 2 3 30 30 H 1.09008 * 109.47223 * 59.93759 * 1 2 3 31 31 H 1.08993 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46248 * 298.70208 * 4 2 1 33 33 H 1.08997 * 109.46143 * 58.66813 * 4 2 1 34 34 H 1.08999 * 109.49993 * 181.31555 * 5 4 2 35 35 H 1.09002 * 109.49725 * 301.41257 * 5 4 2 36 36 H 1.09007 * 109.58634 * 65.15338 * 6 5 4 37 37 H 1.09001 * 109.58886 * 185.43508 * 6 5 4 38 38 H 1.09004 * 109.47565 * 303.65289 * 10 8 7 39 39 H 1.09005 * 109.47223 * 63.65502 * 10 8 7 40 40 H 1.09001 * 109.46833 * 89.99688 * 15 14 11 41 41 H 1.08997 * 109.47091 * 209.99765 * 15 14 11 42 42 H 1.08999 * 109.46843 * 329.99904 * 15 14 11 43 43 H 1.08995 * 109.47239 * 0.02562 * 16 14 11 44 44 H 1.09003 * 109.46909 * 120.00502 * 16 14 11 45 45 H 1.09001 * 109.47368 * 239.99979 * 16 14 11 46 46 H 1.08997 * 109.46605 * 177.86371 * 19 17 7 47 47 H 1.09003 * 109.46989 * 297.86325 * 19 17 7 48 48 H 0.97005 * 120.00475 * 354.61414 * 20 19 17 49 49 H 0.97002 * 119.99740 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7234 -1.2481 5 6 3.5708 -0.6954 -1.2656 6 6 4.1052 -1.4266 -0.0301 7 7 3.5045 -0.8288 1.1699 8 6 4.2810 -0.3852 2.1783 9 8 3.7730 0.0069 3.2075 10 6 5.7803 -0.3768 2.0272 11 16 6.5416 0.1687 3.5807 12 8 6.3323 1.5604 3.7770 13 8 6.2796 -0.7651 4.6193 14 7 8.1702 0.0346 3.3122 15 6 8.9176 1.1679 2.7615 16 6 8.8636 -1.2173 3.6255 17 6 2.0412 -0.7233 1.2499 18 1 1.6051 -1.7212 1.2986 19 6 1.6485 0.0696 2.4981 20 7 2.2705 1.3950 2.4504 21 6 1.9734 2.3258 3.4099 22 1 1.3445 2.0576 4.2460 23 6 2.4803 3.6140 3.3079 24 7 2.2401 4.4929 4.2577 25 14 3.5037 4.1000 1.8227 26 1 2.6113 4.6183 0.7549 27 1 4.4728 5.1553 2.2132 28 1 4.2404 2.9131 1.3191 29 1 -0.3634 0.5129 0.8904 30 1 -0.3634 0.5148 -0.8895 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6967 -1.7576 -1.2347 33 1 1.6582 -0.2251 -2.1388 34 1 3.9335 -1.1904 -2.1665 35 1 3.9159 0.3385 -1.2540 36 1 3.8374 -2.4818 -0.0858 37 1 5.1898 -1.3267 0.0130 38 1 6.1269 -1.3817 1.7860 39 1 6.0608 0.3065 1.2256 40 1 9.2879 1.7895 3.5768 41 1 9.7590 0.7980 2.1756 42 1 8.2620 1.7594 2.1225 43 1 8.1493 -1.9389 4.0220 44 1 9.3185 -1.6173 2.7193 45 1 9.6388 -1.0274 4.3678 46 1 0.5645 0.1780 2.5335 47 1 1.9899 -0.4603 3.3875 48 1 2.8928 1.6135 1.7391 49 1 2.5947 5.3930 4.1865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698954453.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:50 Heat of formation + Delta-G solvation = -75.536293 kcal Electronic energy + Delta-G solvation = -32104.149037 eV Core-core repulsion = 28001.637614 eV Total energy + Delta-G solvation = -4102.511423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.87310 -38.81911 -38.35407 -37.29512 -36.87745 -36.65714 -34.88335 -33.83991 -32.25968 -31.54806 -28.99255 -28.54464 -27.15737 -25.69613 -25.49206 -24.05160 -22.43997 -21.72784 -20.21351 -19.83618 -19.74212 -18.85598 -17.89253 -17.67554 -17.49460 -16.95815 -16.48048 -16.31038 -15.97200 -15.56769 -15.46987 -15.40224 -15.13120 -14.99773 -14.75910 -14.52829 -14.10286 -14.01695 -13.77868 -13.59082 -13.49841 -13.41210 -13.33325 -13.26164 -13.19603 -12.88126 -12.70951 -12.63549 -12.62624 -12.52168 -12.21148 -12.07952 -11.98323 -11.83480 -11.74636 -11.52392 -11.18623 -10.98196 -10.33214 -10.08007 -9.67168 -8.96838 -7.98234 -5.22193 -0.99594 1.18335 1.30251 1.36116 1.47328 1.62490 1.92699 2.48594 2.80420 3.02938 3.19981 3.34342 3.70809 3.75437 3.81620 3.83969 3.88607 3.92997 4.08673 4.13291 4.27189 4.34938 4.43866 4.54827 4.56100 4.63580 4.72768 4.77826 4.79800 4.89930 4.91878 4.94476 4.95204 4.97672 5.00693 5.10470 5.18877 5.25613 5.37022 5.45837 5.54446 5.54620 5.64213 5.80374 6.25492 6.32141 7.08814 7.15046 7.93102 8.11250 9.25814 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009791 B = 0.005982 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.062066 B = 4679.759338 C = 6262.866191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.042 0.958 4 C -0.108 4.108 5 C -0.137 4.137 6 C 0.095 3.905 7 N -0.602 5.602 8 C 0.499 3.501 9 O -0.525 6.525 10 C -0.652 4.652 11 S 2.623 3.377 12 O -0.991 6.991 13 O -0.982 6.982 14 N -1.004 6.004 15 C 0.081 3.919 16 C 0.073 3.927 17 C 0.148 3.852 18 H 0.107 0.893 19 C 0.151 3.849 20 N -0.724 5.724 21 C -0.199 4.199 22 H 0.044 0.956 23 C -0.074 4.074 24 N -0.992 5.992 25 Si 0.948 3.052 26 H -0.271 1.271 27 H -0.299 1.299 28 H -0.262 1.262 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.048 0.952 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.208 0.792 39 H 0.183 0.817 40 H 0.049 0.951 41 H 0.118 0.882 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.358 0.642 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.924 -20.314 -19.339 31.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.061 0.939 4 C -0.145 4.145 5 C -0.175 4.175 6 C -0.026 4.026 7 N -0.336 5.336 8 C 0.283 3.717 9 O -0.401 6.401 10 C -0.783 4.783 11 S 2.716 3.284 12 O -0.980 6.980 13 O -0.972 6.972 14 N -0.846 5.846 15 C -0.063 4.063 16 C -0.071 4.071 17 C 0.045 3.955 18 H 0.125 0.875 19 C 0.025 3.975 20 N -0.369 5.369 21 C -0.331 4.331 22 H 0.062 0.938 23 C -0.264 4.264 24 N -0.645 5.645 25 Si 0.777 3.223 26 H -0.197 1.197 27 H -0.226 1.226 28 H -0.188 1.188 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.130 0.870 35 H 0.067 0.933 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.225 0.775 39 H 0.201 0.799 40 H 0.068 0.932 41 H 0.136 0.864 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.122 0.878 45 H 0.091 0.909 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.192 0.808 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.171 -19.777 -17.822 29.703 hybrid contribution 0.428 1.105 -0.374 1.243 sum 13.600 -18.672 -18.196 29.406 Atomic orbital electron populations 1.21754 0.93648 1.02761 1.01631 1.21502 0.96971 0.98934 0.94830 0.93908 1.21588 0.95505 1.01499 0.95935 1.21994 0.96006 1.00883 0.98646 1.22244 0.99775 0.98354 0.82231 1.47991 1.06092 1.60921 1.18627 1.19832 0.87765 0.78985 0.85078 1.91157 1.73868 1.45423 1.29638 1.30980 1.03000 1.18050 1.26315 1.04403 0.73674 0.73371 0.76978 1.93583 1.85064 1.34176 1.85205 1.93494 1.84641 1.65838 1.53196 1.57286 1.24370 1.22523 1.80428 1.21751 0.98175 0.87233 0.99179 1.21912 0.98451 0.83291 1.03422 1.21645 0.79213 0.99714 0.94891 0.87525 1.21092 0.94592 0.85503 0.96308 1.42457 1.52816 1.11422 1.30231 1.18938 1.22920 0.90283 1.00978 0.93774 1.25390 1.03033 0.96506 1.01473 1.69887 1.53176 1.05174 1.36228 0.85487 0.78807 0.77703 0.80344 1.19692 1.22649 1.18755 0.94502 0.91626 0.90365 0.89403 0.90750 0.87011 0.93334 0.88085 0.87258 0.77459 0.79930 0.93193 0.86367 0.91399 0.90449 0.87781 0.90938 0.95417 0.95428 0.80833 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.96 71.98 0.65 -2.76 16 2 C -0.10 -2.67 2.25 -10.72 -0.02 -2.69 16 3 H 0.04 1.45 6.96 -2.39 -0.02 1.43 16 4 C -0.11 -1.71 5.17 30.62 0.16 -1.55 16 5 C -0.14 -1.83 6.08 30.67 0.19 -1.64 16 6 C 0.09 1.31 6.33 86.36 0.55 1.86 16 7 N -0.60 -16.16 2.85 -795.02 -2.27 -18.43 16 8 C 0.50 17.46 6.54 87.65 0.57 18.03 16 9 O -0.53 -25.64 10.20 -3.06 -0.03 -25.67 16 10 C -0.65 -15.58 5.06 71.23 0.36 -15.22 16 11 S 2.62 90.64 4.52 -56.49 -0.26 90.39 16 12 O -0.99 -47.18 17.09 -127.65 -2.18 -49.36 16 13 O -0.98 -40.14 16.52 -127.30 -2.10 -42.24 16 14 N -1.00 -21.82 3.52 -562.68 -1.98 -23.80 16 15 C 0.08 1.44 10.24 127.77 1.31 2.75 16 16 C 0.07 1.04 10.62 127.77 1.36 2.39 16 17 C 0.15 4.39 2.62 44.98 0.12 4.51 16 18 H 0.11 2.51 8.14 -2.38 -0.02 2.49 16 19 C 0.15 6.59 4.82 86.38 0.42 7.00 16 20 N -0.72 -38.48 2.67 -343.46 -0.92 -39.40 16 21 C -0.20 -13.12 10.31 84.03 0.87 -12.26 16 22 H 0.04 3.20 8.06 -2.91 -0.02 3.18 16 23 C -0.07 -5.02 5.50 84.86 0.47 -4.56 16 24 N -0.99 -71.93 13.97 21.65 0.30 -71.63 16 25 Si 0.95 52.52 27.83 68.60 1.91 54.43 16 26 H -0.27 -13.95 7.11 99.48 0.71 -13.25 16 27 H -0.30 -16.89 7.11 99.48 0.71 -16.19 16 28 H -0.26 -13.17 6.39 99.48 0.64 -12.54 16 29 H 0.04 1.13 6.57 -2.39 -0.02 1.12 16 30 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.11 0.92 5.93 -2.39 -0.01 0.91 16 38 H 0.21 2.33 7.50 -2.39 -0.02 2.31 16 39 H 0.18 3.22 8.06 -2.39 -0.02 3.20 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.12 0.98 8.07 -2.39 -0.02 0.96 16 42 H 0.07 1.26 7.79 -2.39 -0.02 1.25 16 43 H 0.08 1.26 6.87 -2.39 -0.02 1.24 16 44 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.03 1.22 6.53 -2.39 -0.02 1.20 16 47 H 0.03 1.37 6.26 -2.39 -0.01 1.36 16 48 H 0.36 18.27 3.60 -92.70 -0.33 17.94 16 49 H 0.25 17.44 8.31 -92.71 -0.77 16.67 16 Total: -1.00 -106.80 384.34 0.00 -106.80 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.54 Total: 23.04 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 6.98 Total: -4.14 kcal Atomic # 7 Polarization: -148.39 SS G_CDS: -4.86 Total: -153.25 kcal Atomic # 8 Polarization: -112.95 SS G_CDS: -4.32 Total: -117.27 kcal Atomic # 14 Polarization: 52.52 SS G_CDS: 1.91 Total: 54.43 kcal Atomic # 16 Polarization: 90.64 SS G_CDS: -0.26 Total: 90.39 kcal Total: -106.80 0.00 -106.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698954453.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.268 kcal (2) G-P(sol) polarization free energy of solvation -106.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds