Wall clock time and date at job start Wed Apr 1 2020 05:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.52997 * 109.47236 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.36938 * 119.99817 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00298 * 359.97438 * 8 7 6 10 10 C 1.38817 * 119.99790 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99855 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99753 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46894 * 90.00929 * 12 10 8 14 14 H 1.48499 * 109.46787 * 210.00436 * 12 10 8 15 15 H 1.48493 * 109.47410 * 330.00842 * 12 10 8 16 16 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 17 17 C 1.34769 * 119.99686 * 84.99974 * 16 2 1 18 18 O 1.21275 * 120.00678 * 0.02562 * 17 16 2 19 19 C 1.50701 * 119.99690 * 179.97438 * 17 16 2 20 20 C 1.52999 * 109.47228 * 179.97438 * 19 17 16 21 21 C 1.53001 * 108.57910 * 64.30259 * 20 19 17 22 22 C 1.53200 * 108.64811 * 182.29834 * 20 19 17 23 23 C 1.55559 * 106.24333 * 148.66433 * 22 20 19 24 24 S 1.83903 * 99.63762 * 323.00993 * 23 22 20 25 25 O 1.42105 * 111.46597 * 144.08638 * 24 23 22 26 26 O 1.42099 * 111.46714 * 283.94002 * 24 23 22 27 27 N 1.46443 * 108.64922 * 306.30246 * 20 19 17 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 1.08993 * 109.47322 * 300.00158 * 6 5 4 36 36 H 1.09004 * 109.46881 * 60.00519 * 6 5 4 37 37 H 0.97000 * 119.99888 * 359.97438 * 7 6 5 38 38 H 0.97002 * 119.99337 * 179.97438 * 11 10 8 39 39 H 0.97000 * 119.99634 * 265.00306 * 16 2 1 40 40 H 1.08996 * 109.47353 * 300.00507 * 19 17 16 41 41 H 1.09006 * 109.47337 * 60.00072 * 19 17 16 42 42 H 1.09001 * 109.47226 * 60.69612 * 21 20 19 43 43 H 1.08994 * 109.47488 * 180.69904 * 21 20 19 44 44 H 1.08996 * 109.47076 * 300.70273 * 21 20 19 45 45 H 1.09002 * 110.10257 * 267.85708 * 22 20 19 46 46 H 1.09002 * 110.10273 * 29.47014 * 22 20 19 47 47 H 1.08999 * 111.37075 * 80.61065 * 23 22 20 48 48 H 1.08994 * 111.37257 * 205.36140 * 23 22 20 49 49 H 0.97004 * 126.07942 * 57.14179 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0748 -1.3351 2.5627 7 7 5.5348 -1.2312 2.6248 8 6 6.2186 -1.8062 3.6626 9 1 5.6816 -2.3359 4.4355 10 6 7.6020 -1.7082 3.7211 11 7 8.2564 -1.0622 2.7794 12 14 8.5348 -2.4920 5.1371 13 1 8.8972 -3.8870 4.7792 14 1 9.7701 -1.7135 5.4073 15 1 7.6786 -2.4988 6.3504 16 7 2.0184 -0.6906 -1.1962 17 6 2.1472 -0.0183 -2.3570 18 8 1.8592 1.1585 -2.4115 19 6 2.6501 -0.7285 -3.5873 20 6 2.7009 0.2543 -4.7588 21 6 3.7290 1.3414 -4.4388 22 6 3.1589 -0.4996 -6.0113 23 6 2.4656 0.1977 -7.2167 24 16 0.8397 0.5898 -6.4520 25 8 0.3331 1.8337 -6.9163 26 8 0.0184 -0.5658 -6.3550 27 7 1.3852 0.8815 -4.9012 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.6402 -0.8760 3.4506 36 1 3.7864 -2.3853 2.5186 37 1 6.0171 -0.7557 1.9304 38 1 9.2231 -0.9935 2.8206 39 1 2.2491 -1.6318 -1.1525 40 1 3.6494 -1.1204 -3.3977 41 1 1.9779 -1.5509 -3.8325 42 1 4.7104 0.8858 -4.3071 43 1 3.7681 2.0574 -5.2596 44 1 3.4410 1.8552 -3.5218 45 1 4.2422 -0.4338 -6.1130 46 1 2.8502 -1.5434 -5.9541 47 1 2.9955 1.1039 -7.5099 48 1 2.3546 -0.4841 -8.0598 49 1 0.9126 1.3796 -4.2160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700686329.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:38 Heat of formation + Delta-G solvation = -104.191634 kcal Electronic energy + Delta-G solvation = -29162.112576 eV Core-core repulsion = 25058.358565 eV Total energy + Delta-G solvation = -4103.754012 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.60293 -38.48877 -37.31293 -36.62537 -36.14415 -34.87131 -32.73751 -32.15582 -31.58925 -30.54433 -29.42022 -27.98537 -25.70182 -24.82221 -23.09936 -21.67625 -20.87770 -20.66333 -20.49045 -19.84775 -17.84052 -17.19046 -17.02740 -16.85480 -16.45375 -16.05571 -15.67716 -15.10942 -14.94203 -14.73423 -14.36303 -14.20259 -13.90367 -13.73783 -13.57486 -13.52070 -13.09964 -12.95174 -12.89672 -12.72009 -12.40129 -12.27229 -12.23277 -12.17639 -12.12792 -11.89156 -11.57465 -11.34714 -11.27678 -11.15200 -10.91266 -10.88590 -10.82874 -10.50367 -10.43823 -10.03995 -9.82394 -9.73318 -9.71153 -9.14589 -8.89263 -6.94325 -5.78973 -3.07558 -0.05498 2.30184 2.50174 2.98847 3.29721 3.41331 3.46475 3.48369 3.52277 3.82744 4.06105 4.18119 4.49817 4.52842 4.60200 4.72354 4.76821 4.93314 4.99647 5.06317 5.10919 5.11809 5.18092 5.28863 5.36582 5.39143 5.53006 5.55017 5.59747 5.60971 5.74811 5.80683 5.92273 6.03733 6.06342 6.15543 6.20931 6.32118 6.37279 6.44332 6.82954 6.86503 7.04495 7.38138 7.67495 8.11162 8.40318 9.51151 10.09868 10.44174 11.44061 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.002046 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.588253 B =13684.653618 C =14760.157945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.123 4.123 5 C -0.124 4.124 6 C 0.152 3.848 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.720 5.720 17 C 0.523 3.477 18 O -0.540 6.540 19 C -0.152 4.152 20 C 0.160 3.840 21 C -0.167 4.167 22 C -0.119 4.119 23 C -0.592 4.592 24 S 2.565 3.435 25 O -0.964 6.964 26 O -0.958 6.958 27 N -1.078 6.078 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.402 0.598 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.089 0.911 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.281 0.756 -20.698 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.107 0.893 4 C -0.162 4.162 5 C -0.162 4.162 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.217 1.217 14 H -0.217 1.217 15 H -0.208 1.208 16 N -0.371 5.371 17 C 0.309 3.691 18 O -0.418 6.418 19 C -0.194 4.194 20 C 0.069 3.931 21 C -0.226 4.226 22 C -0.158 4.158 23 C -0.723 4.723 24 S 2.659 3.341 25 O -0.953 6.953 26 O -0.947 6.947 27 N -0.850 5.850 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.216 0.784 38 H 0.065 0.935 39 H 0.236 0.764 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.134 0.866 46 H 0.117 0.883 47 H 0.160 0.840 48 H 0.158 0.842 49 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -15.414 1.540 -20.965 26.067 hybrid contribution 1.465 -0.699 0.982 1.897 sum -13.949 0.841 -19.982 24.384 Atomic orbital electron populations 1.22170 0.95451 1.02021 1.02407 1.21051 0.93582 0.97792 0.83930 0.89268 1.21855 0.96875 1.00782 0.96667 1.21721 0.93619 1.01388 0.99476 1.20651 0.86186 0.96437 0.94250 1.42378 1.00199 1.66186 1.29093 1.19245 0.89447 1.27023 1.01351 0.91216 1.24756 0.96462 1.01222 0.98701 1.69664 1.07200 1.46937 1.34518 0.86178 0.79506 0.78633 0.81813 1.21716 1.21743 1.20762 1.46139 1.66953 1.14206 1.09763 1.20394 0.77130 0.87239 0.84308 1.90550 1.50523 1.15957 1.84730 1.22239 1.04397 0.99510 0.93272 1.20246 0.85198 0.93247 0.94416 1.22464 0.97331 0.98383 1.04417 1.22538 1.04586 0.99964 0.88689 1.30771 1.22427 1.11276 1.07814 1.06456 0.76614 0.75056 0.75936 1.93611 1.78361 1.42954 1.80384 1.93649 1.64149 1.51711 1.85160 1.55147 1.27668 1.70153 1.31999 0.92552 0.91596 0.92315 0.90325 0.91441 0.92100 0.92003 0.96519 0.96582 0.78363 0.93522 0.76406 0.87343 0.87920 0.91704 0.92218 0.89232 0.86640 0.88280 0.84005 0.84205 0.71117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.16 16 2 C 0.14 1.46 2.57 -67.93 -0.17 1.28 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 4 C -0.12 -1.36 4.75 -26.73 -0.13 -1.48 16 5 C -0.12 -1.84 5.22 -26.73 -0.14 -1.98 16 6 C 0.15 2.96 6.26 -4.04 -0.03 2.94 16 7 N -0.73 -18.56 5.60 -59.91 -0.34 -18.89 16 8 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 9 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 11 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 12 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 16 N -0.72 -6.65 4.53 -53.80 -0.24 -6.89 16 17 C 0.52 5.17 7.27 -10.99 -0.08 5.09 16 18 O -0.54 -6.71 11.46 5.56 0.06 -6.64 16 19 C -0.15 -1.04 4.70 -27.88 -0.13 -1.17 16 20 C 0.16 1.10 0.83 -131.75 -0.11 0.99 16 21 C -0.17 -1.30 8.23 37.16 0.31 -0.99 16 22 C -0.12 -0.49 5.56 -25.27 -0.14 -0.63 16 23 C -0.59 -2.48 7.66 38.52 0.29 -2.18 16 24 S 2.57 21.90 6.46 -107.50 -0.69 21.21 16 25 O -0.96 -11.89 18.14 -57.40 -1.04 -12.94 16 26 O -0.96 -11.09 18.14 -57.40 -1.04 -12.13 16 27 N -1.08 -9.41 5.61 0.59 0.00 -9.40 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.90 7.75 -51.93 -0.40 0.49 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.38 10.16 7.67 -40.82 -0.31 9.84 16 38 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.40 3.00 8.60 -40.82 -0.35 2.65 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.57 8.05 -51.93 -0.42 0.15 16 42 H 0.06 0.42 8.05 -51.93 -0.42 0.00 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.94 5.80 -51.93 -0.30 0.64 16 45 H 0.12 0.29 7.71 -51.93 -0.40 -0.11 16 46 H 0.10 0.29 7.77 -51.93 -0.40 -0.11 16 47 H 0.14 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.44 4.47 6.79 -40.19 -0.27 4.19 16 LS Contribution 401.52 15.07 6.05 6.05 Total: -1.00 -37.80 401.52 -10.05 -47.85 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -8.29 Total: 8.68 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -0.22 Total: -6.70 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.15 Total: -62.63 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -2.02 Total: -31.71 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 21.90 SS G_CDS: -0.69 Total: 21.21 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.80 -10.05 -47.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700686329.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.343 kcal (2) G-P(sol) polarization free energy of solvation -37.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds