Wall clock time and date at job start Wed Apr 1 2020 05:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.52997 * 109.47236 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.36938 * 119.99817 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00298 * 359.97438 * 8 7 6 10 10 C 1.38817 * 119.99790 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99855 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99753 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46894 * 90.00929 * 12 10 8 14 14 H 1.48499 * 109.46787 * 210.00436 * 12 10 8 15 15 H 1.48493 * 109.47410 * 330.00842 * 12 10 8 16 16 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 17 17 C 1.34769 * 119.99686 * 84.99974 * 16 2 1 18 18 O 1.21275 * 120.00678 * 0.02562 * 17 16 2 19 19 C 1.50701 * 119.99690 * 179.97438 * 17 16 2 20 20 C 1.52999 * 109.47228 * 179.97438 * 19 17 16 21 21 C 1.53001 * 108.57910 * 64.30259 * 20 19 17 22 22 C 1.53200 * 108.64811 * 182.29834 * 20 19 17 23 23 C 1.55559 * 106.24333 * 148.66433 * 22 20 19 24 24 S 1.83903 * 99.63762 * 323.00993 * 23 22 20 25 25 O 1.42105 * 111.46597 * 144.08638 * 24 23 22 26 26 O 1.42099 * 111.46714 * 283.94002 * 24 23 22 27 27 N 1.46443 * 108.64922 * 306.30246 * 20 19 17 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 35 35 H 1.08993 * 109.47322 * 300.00158 * 6 5 4 36 36 H 1.09004 * 109.46881 * 60.00519 * 6 5 4 37 37 H 0.97000 * 119.99888 * 359.97438 * 7 6 5 38 38 H 0.97002 * 119.99337 * 179.97438 * 11 10 8 39 39 H 0.97000 * 119.99634 * 265.00306 * 16 2 1 40 40 H 1.08996 * 109.47353 * 300.00507 * 19 17 16 41 41 H 1.09006 * 109.47337 * 60.00072 * 19 17 16 42 42 H 1.09001 * 109.47226 * 60.69612 * 21 20 19 43 43 H 1.08994 * 109.47488 * 180.69904 * 21 20 19 44 44 H 1.08996 * 109.47076 * 300.70273 * 21 20 19 45 45 H 1.09002 * 110.10257 * 267.85708 * 22 20 19 46 46 H 1.09002 * 110.10273 * 29.47014 * 22 20 19 47 47 H 1.08999 * 111.37075 * 80.61065 * 23 22 20 48 48 H 1.08994 * 111.37257 * 205.36140 * 23 22 20 49 49 H 0.97004 * 126.07942 * 57.14179 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0748 -1.3351 2.5627 7 7 5.5348 -1.2312 2.6248 8 6 6.2186 -1.8062 3.6626 9 1 5.6816 -2.3359 4.4355 10 6 7.6020 -1.7082 3.7211 11 7 8.2564 -1.0622 2.7794 12 14 8.5348 -2.4920 5.1371 13 1 8.8972 -3.8870 4.7792 14 1 9.7701 -1.7135 5.4073 15 1 7.6786 -2.4988 6.3504 16 7 2.0184 -0.6906 -1.1962 17 6 2.1472 -0.0183 -2.3570 18 8 1.8592 1.1585 -2.4115 19 6 2.6501 -0.7285 -3.5873 20 6 2.7009 0.2543 -4.7588 21 6 3.7290 1.3414 -4.4388 22 6 3.1589 -0.4996 -6.0113 23 6 2.4656 0.1977 -7.2167 24 16 0.8397 0.5898 -6.4520 25 8 0.3331 1.8337 -6.9163 26 8 0.0184 -0.5658 -6.3550 27 7 1.3852 0.8815 -4.9012 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -0.2617 2.1370 32 1 1.7516 -1.7715 1.2056 33 1 3.9994 -1.0728 0.4261 34 1 3.8531 0.4370 1.3574 35 1 3.6402 -0.8760 3.4506 36 1 3.7864 -2.3853 2.5186 37 1 6.0171 -0.7557 1.9304 38 1 9.2231 -0.9935 2.8206 39 1 2.2491 -1.6318 -1.1525 40 1 3.6494 -1.1204 -3.3977 41 1 1.9779 -1.5509 -3.8325 42 1 4.7104 0.8858 -4.3071 43 1 3.7681 2.0574 -5.2596 44 1 3.4410 1.8552 -3.5218 45 1 4.2422 -0.4338 -6.1130 46 1 2.8502 -1.5434 -5.9541 47 1 2.9955 1.1039 -7.5099 48 1 2.3546 -0.4841 -8.0598 49 1 0.9126 1.3796 -4.2160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700686329.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:37 Heat of formation + Delta-G solvation = -135.044280 kcal Electronic energy + Delta-G solvation = -29163.450448 eV Core-core repulsion = 25058.358565 eV Total energy + Delta-G solvation = -4105.091883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.30098 -39.15491 -38.08530 -37.66162 -36.90956 -36.42338 -34.17188 -32.79860 -32.61800 -31.46680 -30.67715 -28.58240 -27.21475 -25.32906 -24.73875 -22.62982 -22.16505 -21.46327 -21.13127 -20.48529 -19.12213 -18.49500 -17.89470 -17.43858 -17.26394 -16.73720 -16.62255 -16.34471 -15.95906 -15.72135 -15.40078 -15.32424 -15.18400 -14.83764 -14.48935 -14.13761 -14.07929 -13.88358 -13.64242 -13.42000 -13.26597 -13.21068 -13.15402 -13.06479 -12.98608 -12.76987 -12.76345 -12.46405 -12.37106 -12.22822 -12.10512 -12.06296 -11.85107 -11.80040 -11.66594 -11.47767 -11.41197 -10.92817 -10.59056 -10.33911 -9.95628 -9.00046 -7.95735 -5.24639 -0.64603 1.47708 1.49423 1.57952 1.68896 1.78412 2.30438 2.56051 2.72176 3.06884 3.38029 3.38440 3.56683 3.64870 3.70537 3.97323 4.01202 4.09263 4.13166 4.29404 4.30942 4.42055 4.53282 4.60419 4.62778 4.70178 4.74170 4.76987 4.82194 4.88521 4.89300 4.93477 4.95140 5.01017 5.07673 5.14779 5.30042 5.31367 5.39574 5.44141 5.51192 5.54719 5.69343 6.27276 6.29893 6.67021 7.32962 7.39429 8.10088 8.32345 9.27983 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.002046 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.588253 B =13684.653618 C =14760.157945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.146 3.854 3 H 0.065 0.935 4 C -0.110 4.110 5 C -0.109 4.109 6 C 0.149 3.851 7 N -0.750 5.750 8 C -0.247 4.247 9 H 0.075 0.925 10 C -0.078 4.078 11 N -0.970 5.970 12 Si 0.975 3.025 13 H -0.284 1.284 14 H -0.296 1.296 15 H -0.270 1.270 16 N -0.717 5.717 17 C 0.512 3.488 18 O -0.571 6.571 19 C -0.151 4.151 20 C 0.152 3.848 21 C -0.167 4.167 22 C -0.118 4.118 23 C -0.554 4.554 24 S 2.552 3.448 25 O -1.014 7.014 26 O -0.997 6.997 27 N -1.085 6.085 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.016 0.984 36 H 0.025 0.975 37 H 0.373 0.627 38 H 0.252 0.748 39 H 0.412 0.588 40 H 0.132 0.868 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.144 0.856 46 H 0.119 0.881 47 H 0.160 0.840 48 H 0.173 0.827 49 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.603 -1.320 -21.325 25.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.083 0.917 4 C -0.148 4.148 5 C -0.147 4.147 6 C 0.023 3.977 7 N -0.392 5.392 8 C -0.379 4.379 9 H 0.093 0.907 10 C -0.270 4.270 11 N -0.621 5.621 12 Si 0.803 3.197 13 H -0.211 1.211 14 H -0.222 1.222 15 H -0.195 1.195 16 N -0.369 5.369 17 C 0.300 3.700 18 O -0.451 6.451 19 C -0.192 4.192 20 C 0.062 3.938 21 C -0.226 4.226 22 C -0.157 4.157 23 C -0.689 4.689 24 S 2.652 3.348 25 O -1.004 7.004 26 O -0.986 6.986 27 N -0.854 5.854 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.043 0.957 37 H 0.204 0.796 38 H 0.060 0.940 39 H 0.248 0.752 40 H 0.150 0.850 41 H 0.137 0.863 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.162 0.838 46 H 0.137 0.863 47 H 0.178 0.822 48 H 0.190 0.810 49 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -14.818 -0.563 -21.569 26.175 hybrid contribution 1.262 -0.029 1.188 1.734 sum -13.556 -0.592 -20.381 24.485 Atomic orbital electron populations 1.22095 0.94438 1.02722 1.02078 1.20872 0.94253 0.96584 0.84219 0.91706 1.21741 0.93755 1.02101 0.97227 1.21560 0.96236 0.99597 0.97344 1.20860 0.83180 0.97402 0.96265 1.42635 1.02502 1.65843 1.28230 1.19660 0.90017 1.26342 1.01874 0.90662 1.25602 0.97514 1.02423 1.01431 1.69818 1.07098 1.48697 1.36477 0.85125 0.77844 0.77591 0.79113 1.21107 1.22215 1.19517 1.46127 1.66753 1.14674 1.09349 1.21059 0.76623 0.87080 0.85233 1.90551 1.51746 1.17499 1.85273 1.22338 1.05851 0.99512 0.91513 1.20529 0.83962 0.93162 0.96179 1.22446 0.98310 0.98829 1.03006 1.22718 1.06111 1.00392 0.86486 1.30606 1.16854 1.12921 1.08505 1.06627 0.78505 0.73647 0.76016 1.93542 1.80736 1.45020 1.81089 1.93591 1.67143 1.52151 1.85737 1.55144 1.28444 1.70102 1.31749 0.91249 0.90829 0.93784 0.89738 0.89570 0.91863 0.93689 0.96626 0.95665 0.79590 0.93962 0.75171 0.85011 0.86307 0.90142 0.91645 0.92604 0.83805 0.86308 0.82154 0.80953 0.72320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.48 71.98 0.68 -2.09 16 2 C 0.15 2.93 2.57 44.99 0.12 3.05 16 3 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 4 C -0.11 -2.24 4.75 30.59 0.15 -2.10 16 5 C -0.11 -3.17 5.22 30.59 0.16 -3.01 16 6 C 0.15 5.66 6.26 86.38 0.54 6.20 16 7 N -0.75 -37.83 5.60 -343.45 -1.92 -39.76 16 8 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 9 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 10 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 11 N -0.97 -58.97 13.06 21.65 0.28 -58.69 16 12 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 14 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 N -0.72 -12.59 4.53 -442.54 -2.00 -14.59 16 17 C 0.51 9.97 7.27 87.66 0.64 10.60 16 18 O -0.57 -14.84 11.46 -3.01 -0.03 -14.88 16 19 C -0.15 -1.76 4.70 29.85 0.14 -1.62 16 20 C 0.15 1.84 0.83 3.68 0.00 1.84 16 21 C -0.17 -2.41 8.23 71.98 0.59 -1.82 16 22 C -0.12 -0.50 5.56 31.54 0.18 -0.32 16 23 C -0.55 -2.69 7.66 72.86 0.56 -2.13 16 24 S 2.55 43.34 6.46 -56.49 -0.37 42.97 16 25 O -1.01 -26.36 18.14 -127.79 -2.32 -28.68 16 26 O -1.00 -23.34 18.14 -127.79 -2.32 -25.66 16 27 N -1.09 -19.18 5.61 -152.04 -0.85 -20.03 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 1.80 7.75 -2.39 -0.02 1.78 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.37 20.02 7.67 -92.71 -0.71 19.31 16 38 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 39 H 0.41 5.38 8.60 -92.71 -0.80 4.58 16 40 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.12 1.02 8.05 -2.38 -0.02 1.00 16 42 H 0.08 0.87 8.05 -2.39 -0.02 0.85 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 1.21 5.80 -2.39 -0.01 1.20 16 45 H 0.14 -0.05 7.71 -2.39 -0.02 -0.07 16 46 H 0.12 0.13 7.77 -2.39 -0.02 0.11 16 47 H 0.16 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.17 -0.12 8.14 -2.39 -0.02 -0.14 16 49 H 0.43 9.49 6.79 -93.11 -0.63 8.86 16 Total: -1.00 -84.77 401.52 -3.62 -88.40 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -1.17 Total: 31.60 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 5.06 Total: -8.28 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -4.50 Total: -133.08 kcal Atomic # 8 Polarization: -64.54 SS G_CDS: -4.67 Total: -69.22 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 43.34 SS G_CDS: -0.37 Total: 42.97 kcal Total: -84.77 -3.62 -88.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700686329.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.647 kcal (2) G-P(sol) polarization free energy of solvation -84.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds