Wall clock time and date at job start Wed Apr 1 2020 05:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.87676 * 2 1 4 4 C 1.54330 * 109.88590 * 121.01802 * 2 1 3 5 5 C 1.55154 * 102.94362 * 141.61032 * 4 2 1 6 6 H 1.09006 * 111.00102 * 206.42783 * 5 4 2 7 7 N 1.46489 * 111.00524 * 82.57479 * 5 4 2 8 8 C 1.36935 * 120.00352 * 154.99887 * 7 5 4 9 9 H 1.08002 * 119.99763 * 0.02562 * 8 7 5 10 10 C 1.38815 * 120.00385 * 179.97438 * 8 7 5 11 11 N 1.31612 * 119.99932 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99859 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47356 * 60.00214 * 12 10 8 14 14 H 1.48507 * 109.47055 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47305 * 299.99803 * 12 10 8 16 16 C 1.54907 * 101.58330 * 324.49593 * 5 4 2 17 17 N 1.47019 * 109.88320 * 238.98297 * 2 1 3 18 18 C 1.34780 * 125.64766 * 61.60696 * 17 2 1 19 19 O 1.21282 * 119.99688 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00178 * 180.02562 * 18 17 2 21 21 S 1.81399 * 109.47267 * 180.02562 * 20 18 17 22 22 O 1.42097 * 110.54196 * 284.09001 * 21 20 18 23 23 O 1.42098 * 110.53995 * 60.83974 * 21 20 18 24 24 N 1.65602 * 104.44816 * 172.46437 * 21 20 18 25 25 C 1.46502 * 120.00102 * 67.25155 * 24 21 20 26 26 C 1.52998 * 109.46995 * 68.35270 * 25 24 21 27 27 C 1.53002 * 109.47267 * 188.35252 * 25 24 21 28 28 C 1.52996 * 109.47008 * 308.35262 * 25 24 21 29 29 H 1.09000 * 109.47203 * 299.29572 * 1 2 3 30 30 H 1.09006 * 109.46954 * 179.29994 * 1 2 3 31 31 H 1.08998 * 109.47207 * 59.30061 * 1 2 3 32 32 H 1.09006 * 110.71545 * 259.97621 * 4 2 1 33 33 H 1.08996 * 110.71610 * 23.06446 * 4 2 1 34 34 H 0.97009 * 120.00301 * 334.99860 * 7 5 4 35 35 H 0.97005 * 120.00188 * 179.97438 * 11 10 8 36 36 H 1.09000 * 110.36677 * 155.84562 * 16 5 4 37 37 H 1.08997 * 110.37048 * 278.17646 * 16 5 4 38 38 H 1.09007 * 109.46904 * 300.00106 * 20 18 17 39 39 H 1.09002 * 109.47117 * 60.00035 * 20 18 17 40 40 H 0.97000 * 119.99802 * 247.24746 * 24 21 20 41 41 H 1.09002 * 109.47522 * 50.29558 * 26 25 24 42 42 H 1.08999 * 109.47104 * 170.29481 * 26 25 24 43 43 H 1.09002 * 109.47541 * 290.29273 * 26 25 24 44 44 H 1.09003 * 109.46500 * 59.99392 * 27 25 24 45 45 H 1.08996 * 109.47104 * 179.97438 * 27 25 24 46 46 H 1.09005 * 109.46896 * 300.00014 * 27 25 24 47 47 H 1.09006 * 109.47182 * 72.32368 * 28 25 24 48 48 H 1.09001 * 109.47293 * 192.32623 * 28 25 24 49 49 H 1.09000 * 109.47076 * 312.33232 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0549 -0.7479 1.2438 5 6 3.2877 -1.5133 0.6944 6 1 3.4852 -2.4093 1.2829 7 7 4.4674 -0.6460 0.6502 8 6 5.7217 -1.1930 0.7003 9 1 5.8413 -2.2640 0.7719 10 6 6.8397 -0.3712 0.6579 11 7 6.6940 0.9339 0.5701 12 14 8.5507 -1.1175 0.7269 13 1 8.7369 -2.0362 -0.4250 14 1 9.5657 -0.0351 0.6665 15 1 8.7098 -1.8745 1.9945 16 6 2.8146 -1.8805 -0.7342 17 7 2.0300 -0.7124 -1.1849 18 6 1.8074 -0.3586 -2.4662 19 8 1.1436 0.6250 -2.7171 20 6 2.3832 -1.1850 -3.5871 21 16 1.9114 -0.4563 -5.1798 22 8 0.5525 -0.7456 -5.4775 23 8 2.4211 0.8652 -5.2939 24 7 2.7686 -1.3229 -6.3008 25 6 2.4612 -2.7377 -6.5242 26 6 1.0831 -2.8633 -7.1768 27 6 3.5190 -3.3504 -7.4444 28 6 2.4605 -3.4771 -5.1848 29 1 -0.3633 0.5029 0.8962 30 1 -0.3633 -1.0277 -0.0126 31 1 -0.3633 0.5246 -0.8836 32 1 2.3530 -0.0431 2.0201 33 1 1.3040 -1.4414 1.6221 34 1 4.3601 0.3160 0.5855 35 1 7.4752 1.5083 0.5408 36 1 3.6717 -2.0357 -1.3895 37 1 2.1886 -2.7725 -0.7090 38 1 3.4700 -1.2032 -3.5039 39 1 1.9970 -2.2024 -3.5239 40 1 3.4742 -0.8936 -6.8096 41 1 1.0278 -2.1996 -8.0397 42 1 0.9264 -3.8926 -7.4996 43 1 0.3132 -2.5873 -6.4562 44 1 4.5008 -3.2607 -6.9794 45 1 3.2905 -4.4031 -7.6102 46 1 3.5195 -2.8236 -8.3987 47 1 1.5751 -3.1955 -4.6148 48 1 2.4510 -4.5524 -5.3633 49 1 3.3549 -3.2101 -4.6219 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700855639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:06 Heat of formation + Delta-G solvation = -115.340979 kcal Electronic energy + Delta-G solvation = -30729.415544 eV Core-core repulsion = 26625.178060 eV Total energy + Delta-G solvation = -4104.237483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.37931 -39.15016 -39.00128 -38.05706 -37.08543 -35.83450 -33.60670 -33.10718 -31.97513 -31.10670 -30.13453 -28.19449 -28.03213 -26.77154 -25.71414 -23.69861 -21.73612 -21.48583 -20.44876 -20.01597 -19.28182 -18.92655 -18.10049 -17.70261 -17.58253 -17.09360 -16.56662 -16.21551 -15.98605 -15.64323 -15.36210 -15.19054 -14.91562 -14.74586 -14.63662 -14.21641 -14.12769 -13.90885 -13.53368 -13.35999 -13.27102 -13.25585 -13.17034 -13.05051 -12.88520 -12.86094 -12.70988 -12.57214 -12.42177 -12.39067 -12.27934 -12.26713 -12.09600 -11.91140 -11.63750 -11.59484 -11.50966 -11.28431 -10.97276 -10.58098 -9.80373 -8.99997 -7.92325 -5.22240 -0.94152 1.27802 1.50143 1.52234 1.58573 1.63182 1.90007 2.57676 2.70341 3.06727 3.17549 3.39096 3.68109 3.73617 3.76050 3.86288 3.92260 3.99103 4.04121 4.09792 4.10646 4.34871 4.36901 4.45356 4.66577 4.67376 4.74252 4.75362 4.76597 4.88186 4.93117 4.99431 5.03268 5.07241 5.15466 5.17417 5.18697 5.30914 5.31626 5.40385 5.42486 5.53810 5.56697 6.07501 6.27629 6.36759 6.80017 7.34417 8.09254 8.31207 9.30825 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.003831 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.073114 B = 7307.662498 C = 8810.107877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.126 3.874 3 H 0.042 0.958 4 C -0.123 4.123 5 C 0.155 3.845 6 H 0.096 0.904 7 N -0.728 5.728 8 C -0.237 4.237 9 H 0.090 0.910 10 C -0.076 4.076 11 N -0.973 5.973 12 Si 0.970 3.030 13 H -0.274 1.274 14 H -0.307 1.307 15 H -0.276 1.276 16 C 0.069 3.931 17 N -0.587 5.587 18 C 0.540 3.460 19 O -0.592 6.592 20 C -0.670 4.670 21 S 2.650 3.350 22 O -0.968 6.968 23 O -0.996 6.996 24 N -1.101 6.101 25 C 0.163 3.837 26 C -0.181 4.181 27 C -0.147 4.147 28 C -0.209 4.209 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.178 0.822 39 H 0.204 0.796 40 H 0.426 0.574 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.112 0.888 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.298 -16.102 -10.876 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.023 3.977 3 H 0.060 0.940 4 C -0.161 4.161 5 C 0.045 3.955 6 H 0.114 0.886 7 N -0.366 5.366 8 C -0.369 4.369 9 H 0.108 0.892 10 C -0.268 4.268 11 N -0.623 5.623 12 Si 0.799 3.201 13 H -0.200 1.200 14 H -0.234 1.234 15 H -0.202 1.202 16 C -0.055 4.055 17 N -0.317 5.317 18 C 0.328 3.672 19 O -0.475 6.475 20 C -0.798 4.798 21 S 2.741 3.259 22 O -0.957 6.957 23 O -0.986 6.986 24 N -0.864 5.864 25 C 0.076 3.924 26 C -0.240 4.240 27 C -0.206 4.206 28 C -0.266 4.266 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.200 0.800 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.196 0.804 39 H 0.220 0.780 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.131 0.869 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.225 -15.105 -11.093 21.845 hybrid contribution 1.854 0.722 0.139 1.995 sum -9.370 -14.383 -10.954 20.363 Atomic orbital electron populations 1.22079 0.93202 1.03181 1.02571 1.21684 0.95391 0.95538 0.85074 0.94015 1.23030 0.97921 1.00139 0.95056 1.21683 0.86048 0.94636 0.93098 0.88580 1.42587 1.01242 1.05399 1.87405 1.19676 0.84065 0.92655 1.40494 0.89223 1.25563 1.01701 0.95639 1.03876 1.69838 1.29445 1.03702 1.59332 0.85268 0.79789 0.76623 0.78380 1.19979 1.23365 1.20204 1.23608 0.95039 0.87568 0.99303 1.48473 1.50428 1.28859 1.03946 1.19342 0.80117 0.84089 0.83649 1.90782 1.43445 1.29379 1.83932 1.31677 1.15031 1.15476 1.17635 1.03582 0.74131 0.72751 0.75445 1.93519 1.34730 1.85061 1.82408 1.93529 1.81288 1.37704 1.86039 1.55691 1.54220 1.22007 1.54516 1.20473 0.96679 0.78280 0.97013 1.22619 0.95998 1.03543 1.01822 1.22078 0.97605 1.02168 0.98711 1.23082 1.02839 1.04630 0.96087 0.89704 0.90531 0.93987 0.90663 0.86517 0.80014 0.94355 0.90680 0.87463 0.80441 0.77950 0.73762 0.92675 0.89072 0.91623 0.91090 0.88928 0.91605 0.91952 0.86898 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.10 71.98 0.65 -3.36 16 2 C 0.13 3.96 3.44 45.34 0.16 4.12 16 3 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.12 -3.29 6.08 31.78 0.19 -3.10 16 5 C 0.16 4.91 3.72 46.38 0.17 5.08 16 6 H 0.10 2.71 8.09 -2.38 -0.02 2.70 16 7 N -0.73 -32.80 5.23 -316.40 -1.66 -34.45 16 8 C -0.24 -11.78 9.96 84.03 0.84 -10.94 16 9 H 0.09 4.06 7.83 -2.91 -0.02 4.03 16 10 C -0.08 -4.09 5.50 84.86 0.47 -3.62 16 11 N -0.97 -58.33 13.06 21.65 0.28 -58.04 16 12 Si 0.97 43.46 29.55 68.60 2.03 45.49 16 13 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.31 -14.42 7.11 99.48 0.71 -13.72 16 15 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 16 C 0.07 1.87 6.41 86.79 0.56 2.42 16 17 N -0.59 -18.77 3.08 -787.23 -2.42 -21.19 16 18 C 0.54 19.04 7.66 87.66 0.67 19.71 16 19 O -0.59 -25.66 14.68 0.41 0.01 -25.65 16 20 C -0.67 -17.00 3.96 71.24 0.28 -16.72 16 21 S 2.65 77.91 4.39 -56.49 -0.25 77.66 16 22 O -0.97 -32.00 15.14 -127.65 -1.93 -33.93 16 23 O -1.00 -39.51 17.79 -124.37 -2.21 -41.72 16 24 N -1.10 -21.18 5.47 -152.22 -0.83 -22.02 16 25 C 0.16 2.30 1.14 3.60 0.00 2.31 16 26 C -0.18 -2.93 8.06 71.98 0.58 -2.35 16 27 C -0.15 -1.35 8.55 71.98 0.62 -0.73 16 28 C -0.21 -2.31 6.74 71.98 0.49 -1.82 16 29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.04 1.33 6.89 -2.39 -0.02 1.32 16 32 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.12 2.22 7.85 -2.39 -0.02 2.20 16 34 H 0.37 19.12 7.86 -92.70 -0.73 18.39 16 35 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 36 H 0.07 2.15 7.50 -2.39 -0.02 2.13 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.18 3.95 7.81 -2.39 -0.02 3.93 16 39 H 0.20 3.42 4.65 -2.39 -0.01 3.41 16 40 H 0.43 6.96 8.58 -96.75 -0.83 6.13 16 41 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 42 H 0.09 0.95 8.12 -2.39 -0.02 0.93 16 43 H 0.06 1.37 5.94 -2.39 -0.01 1.36 16 44 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 47 H 0.06 0.75 5.66 -2.38 -0.01 0.74 16 48 H 0.11 0.68 8.09 -2.39 -0.02 0.66 16 49 H 0.08 0.84 7.11 -2.39 -0.02 0.82 16 Total: -1.00 -82.13 393.57 -1.90 -84.03 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: -0.59 Total: 38.82 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 5.67 Total: -8.99 kcal Atomic # 7 Polarization: -131.07 SS G_CDS: -4.63 Total: -135.70 kcal Atomic # 8 Polarization: -97.17 SS G_CDS: -4.14 Total: -101.31 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 77.91 SS G_CDS: -0.25 Total: 77.66 kcal Total: -82.13 -1.90 -84.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700855639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.309 kcal (2) G-P(sol) polarization free energy of solvation -82.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds