Wall clock time and date at job start Wed Apr 1 2020 05:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.32789 * 2 1 4 4 C 1.54906 * 110.36809 * 122.24217 * 2 1 3 5 5 C 1.55155 * 101.58528 * 155.95517 * 4 2 1 6 6 H 1.08996 * 110.71639 * 83.03709 * 5 4 2 7 7 N 1.46497 * 110.72091 * 206.13449 * 5 4 2 8 8 C 1.36932 * 120.00098 * 205.00286 * 7 5 4 9 9 H 1.08002 * 119.99838 * 359.97438 * 8 7 5 10 10 C 1.38817 * 120.00314 * 180.02562 * 8 7 5 11 11 N 1.31618 * 120.00008 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 119.99881 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47095 * 90.00199 * 12 10 8 14 14 H 1.48494 * 109.47253 * 209.99957 * 12 10 8 15 15 H 1.48502 * 109.47228 * 330.00583 * 12 10 8 16 16 C 1.54316 * 102.94097 * 324.49659 * 5 4 2 17 17 N 1.47027 * 107.27468 * 22.19389 * 16 5 4 18 18 C 1.34776 * 125.65086 * 181.02385 * 17 16 5 19 19 O 1.21280 * 119.99817 * 180.02562 * 18 17 16 20 20 C 1.50694 * 119.99973 * 0.03961 * 18 17 16 21 21 S 1.81406 * 109.47016 * 179.97438 * 20 18 17 22 22 O 1.42100 * 110.54377 * 283.36594 * 21 20 18 23 23 O 1.42100 * 110.53886 * 60.11976 * 21 20 18 24 24 N 1.65598 * 104.44710 * 171.74269 * 21 20 18 25 25 C 1.46501 * 119.99947 * 60.16537 * 24 21 20 26 26 C 1.52999 * 109.47143 * 37.71744 * 25 24 21 27 27 C 1.53002 * 109.47012 * 157.71924 * 25 24 21 28 28 C 1.53003 * 109.47079 * 277.71653 * 25 24 21 29 29 H 1.09003 * 109.46755 * 297.76179 * 1 2 3 30 30 H 1.09005 * 109.46731 * 57.75857 * 1 2 3 31 31 H 1.08999 * 109.47383 * 177.76076 * 1 2 3 32 32 H 1.09004 * 111.00331 * 37.87557 * 4 2 1 33 33 H 1.09002 * 111.00326 * 274.03181 * 4 2 1 34 34 H 0.97003 * 120.00051 * 24.99431 * 7 5 4 35 35 H 0.97000 * 120.00281 * 180.02562 * 11 10 8 36 36 H 1.09004 * 109.88647 * 141.61019 * 16 5 4 37 37 H 1.09003 * 109.88401 * 262.77469 * 16 5 4 38 38 H 1.08998 * 109.47120 * 299.99700 * 20 18 17 39 39 H 1.09009 * 109.47261 * 60.00175 * 20 18 17 40 40 H 0.97002 * 119.99810 * 240.16037 * 24 21 20 41 41 H 1.08995 * 109.46823 * 60.00535 * 26 25 24 42 42 H 1.09003 * 109.46517 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.46884 * 299.99798 * 26 25 24 44 44 H 1.08996 * 109.47655 * 59.99884 * 27 25 24 45 45 H 1.09003 * 109.47189 * 180.02562 * 27 25 24 46 46 H 1.09004 * 109.47275 * 299.99438 * 27 25 24 47 47 H 1.08996 * 109.46856 * 55.99293 * 28 25 24 48 48 H 1.08996 * 109.47168 * 176.00041 * 28 25 24 49 49 H 1.09001 * 109.46806 * 295.99503 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0692 -0.7747 1.2283 5 6 3.4789 -1.1967 0.7363 6 1 4.1949 -0.3871 0.8777 7 7 3.9272 -2.4089 1.4260 8 6 5.2655 -2.6703 1.5509 9 1 5.9906 -1.9830 1.1406 10 6 5.6904 -3.8193 2.2039 11 7 6.9768 -4.0707 2.3234 12 14 4.4364 -5.0084 2.9128 13 1 4.0804 -6.0219 1.8874 14 1 5.0144 -5.6876 4.1002 15 1 3.2175 -4.2613 3.3143 16 6 3.2523 -1.4745 -0.7646 17 7 2.0453 -0.7380 -1.1676 18 6 1.5006 -0.7371 -2.4004 19 8 0.4992 -0.0894 -2.6204 20 6 2.1358 -1.5412 -3.5054 21 16 1.1758 -1.3363 -5.0309 22 8 -0.0130 -2.1130 -4.9802 23 8 1.1422 0.0303 -5.4190 24 7 2.0934 -2.0698 -6.1981 25 6 2.4204 -3.4934 -6.0856 26 6 1.2186 -4.2492 -5.5151 27 6 2.7622 -4.0491 -7.4696 28 6 3.6219 -3.6687 -5.1547 29 1 -0.3633 0.4787 0.9094 30 1 -0.3633 0.5483 -0.8693 31 1 -0.3634 -1.0269 -0.0402 32 1 1.4521 -1.6477 1.4412 33 1 2.1381 -0.1249 2.1007 34 1 3.2760 -3.0264 1.7942 35 1 7.2737 -4.8738 2.7794 36 1 4.1094 -1.1246 -1.3400 37 1 3.1060 -2.5426 -0.9260 38 1 3.1558 -1.1931 -3.6679 39 1 2.1516 -2.5946 -3.2253 40 1 2.4143 -1.5568 -6.9563 41 1 0.3628 -4.1243 -6.1783 42 1 1.4619 -5.3085 -5.4319 43 1 0.9752 -3.8533 -4.5292 44 1 3.6183 -3.5107 -7.8760 45 1 3.0050 -5.1084 -7.3860 46 1 1.9062 -3.9243 -8.1328 47 1 3.4044 -3.2094 -4.1904 48 1 3.8210 -4.7311 -5.0146 49 1 4.4962 -3.1903 -5.5960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700855640.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:09 Heat of formation + Delta-G solvation = -109.740335 kcal Electronic energy + Delta-G solvation = -30505.120612 eV Core-core repulsion = 26401.125991 eV Total energy + Delta-G solvation = -4103.994621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.48873 -39.19053 -39.03026 -38.04651 -37.08094 -36.13211 -33.72474 -33.42174 -31.96678 -31.00563 -30.51470 -28.28497 -28.07360 -26.72757 -25.58377 -23.38879 -21.99407 -21.65660 -20.55826 -20.00485 -19.71239 -18.90285 -18.14354 -17.59109 -17.53352 -17.26477 -16.60212 -16.40625 -16.05138 -15.77572 -15.24777 -15.14051 -14.96960 -14.88636 -14.57789 -14.41537 -14.21562 -13.85445 -13.70629 -13.51382 -13.47140 -13.28596 -13.21665 -13.15096 -13.06385 -12.90081 -12.73575 -12.53486 -12.47059 -12.45114 -12.33592 -12.23296 -12.01855 -11.96116 -11.82246 -11.61601 -11.54398 -11.14921 -10.94855 -10.56906 -9.82558 -9.38264 -8.00788 -5.36393 -0.95060 1.22065 1.42272 1.43131 1.50856 1.58783 1.80926 2.49933 2.66345 3.01713 3.14408 3.28767 3.52150 3.66476 3.72245 3.75856 3.81017 3.93080 4.04568 4.07345 4.10100 4.26396 4.33741 4.39701 4.42979 4.65895 4.68026 4.72272 4.79235 4.82291 4.87852 4.91950 5.02888 5.05181 5.08237 5.14938 5.22547 5.26112 5.30695 5.42495 5.43889 5.44517 5.79002 6.09153 6.21830 6.26936 6.73598 7.07710 7.81480 7.99748 9.19808 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010954 B = 0.003580 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.490702 B = 7818.671700 C = 9546.431036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.130 3.870 3 H 0.092 0.908 4 C -0.129 4.129 5 C 0.168 3.832 6 H 0.076 0.924 7 N -0.738 5.738 8 C -0.233 4.233 9 H 0.066 0.934 10 C -0.054 4.054 11 N -0.980 5.980 12 Si 0.946 3.054 13 H -0.279 1.279 14 H -0.302 1.302 15 H -0.251 1.251 16 C 0.076 3.924 17 N -0.595 5.595 18 C 0.548 3.452 19 O -0.575 6.575 20 C -0.669 4.669 21 S 2.655 3.345 22 O -0.972 6.972 23 O -0.985 6.985 24 N -1.099 6.099 25 C 0.163 3.837 26 C -0.185 4.185 27 C -0.147 4.147 28 C -0.191 4.191 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.368 0.632 35 H 0.257 0.743 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.191 0.809 39 H 0.184 0.816 40 H 0.428 0.572 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.086 0.914 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.342 1.691 -16.099 18.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.109 0.891 4 C -0.168 4.168 5 C 0.058 3.942 6 H 0.095 0.905 7 N -0.380 5.380 8 C -0.363 4.363 9 H 0.084 0.916 10 C -0.246 4.246 11 N -0.629 5.629 12 Si 0.773 3.227 13 H -0.205 1.205 14 H -0.229 1.229 15 H -0.175 1.175 16 C -0.049 4.049 17 N -0.327 5.327 18 C 0.335 3.665 19 O -0.457 6.457 20 C -0.797 4.797 21 S 2.745 3.255 22 O -0.962 6.962 23 O -0.975 6.975 24 N -0.862 5.862 25 C 0.076 3.924 26 C -0.243 4.243 27 C -0.206 4.206 28 C -0.249 4.249 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.202 0.798 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.208 0.792 39 H 0.201 0.799 40 H 0.265 0.735 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.105 0.895 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.531 2.367 -16.228 19.490 hybrid contribution 0.538 -0.973 0.675 1.301 sum -9.993 1.394 -15.553 18.539 Atomic orbital electron populations 1.22101 0.93575 1.02348 1.03616 1.22120 0.95421 0.96129 0.83577 0.89057 1.23164 0.95446 1.00883 0.97257 1.21320 0.94999 0.88945 0.88914 0.90549 1.42675 1.03367 1.24674 1.67321 1.19037 0.83305 1.04551 1.29440 0.91622 1.25394 0.97182 1.00308 1.01738 1.69861 1.14939 1.28612 1.49533 0.85560 0.79647 0.79613 0.77831 1.20483 1.22888 1.17544 1.23135 0.85782 0.96789 0.99182 1.48513 1.28172 1.47440 1.08566 1.19192 0.83350 0.81071 0.82868 1.90781 1.26744 1.45988 1.82230 1.31404 1.18947 1.11844 1.17501 1.03513 0.74542 0.72337 0.75127 1.93588 1.45000 1.71229 1.86367 1.93523 1.86786 1.36086 1.81109 1.55568 1.73524 1.18750 1.38378 1.20457 0.94816 0.78372 0.98799 1.22672 0.97608 1.02412 1.01590 1.22055 1.02605 1.02508 0.93404 1.22753 0.98103 1.04683 0.99383 0.89489 0.91651 0.93370 0.90466 0.87830 0.79800 0.93369 0.90249 0.90663 0.79155 0.79895 0.73473 0.91523 0.88873 0.92815 0.90588 0.89614 0.91880 0.92007 0.89517 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 8.60 71.98 0.62 -3.27 16 2 C 0.13 3.20 3.76 45.47 0.17 3.38 16 3 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.13 -3.17 6.13 31.98 0.20 -2.98 16 5 C 0.17 5.16 3.61 46.18 0.17 5.33 16 6 H 0.08 2.42 8.09 -2.39 -0.02 2.40 16 7 N -0.74 -29.20 4.95 -317.35 -1.57 -30.78 16 8 C -0.23 -11.67 10.44 84.04 0.88 -10.79 16 9 H 0.07 3.60 8.06 -2.91 -0.02 3.58 16 10 C -0.05 -2.91 5.50 84.86 0.47 -2.44 16 11 N -0.98 -58.47 13.97 21.65 0.30 -58.16 16 12 Si 0.95 41.59 27.74 68.60 1.90 43.49 16 13 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 15 H -0.25 -9.85 6.52 99.48 0.65 -9.20 16 16 C 0.08 2.07 6.24 86.73 0.54 2.61 16 17 N -0.59 -15.88 3.24 -788.15 -2.56 -18.44 16 18 C 0.55 15.67 7.65 87.66 0.67 16.34 16 19 O -0.58 -20.15 13.33 1.61 0.02 -20.13 16 20 C -0.67 -13.86 3.92 71.23 0.28 -13.58 16 21 S 2.65 65.04 4.25 -56.49 -0.24 64.80 16 22 O -0.97 -29.38 14.49 -127.65 -1.85 -31.23 16 23 O -0.99 -31.51 17.75 -124.01 -2.20 -33.71 16 24 N -1.10 -17.21 5.42 -152.20 -0.82 -18.03 16 25 C 0.16 2.16 1.16 3.60 0.00 2.17 16 26 C -0.18 -3.08 7.09 71.98 0.51 -2.57 16 27 C -0.15 -1.36 8.65 71.98 0.62 -0.74 16 28 C -0.19 -2.20 8.61 71.98 0.62 -1.58 16 29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.89 6.10 -2.38 -0.01 1.87 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.93 7.93 -2.38 -0.02 1.91 16 33 H 0.10 2.22 8.14 -2.39 -0.02 2.21 16 34 H 0.37 14.17 5.62 -92.71 -0.52 13.65 16 35 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 2.08 8.03 -2.39 -0.02 2.06 16 38 H 0.19 2.73 7.93 -2.39 -0.02 2.71 16 39 H 0.18 2.98 5.79 -2.39 -0.01 2.96 16 40 H 0.43 5.05 8.67 -96.75 -0.84 4.21 16 41 H 0.07 1.29 7.69 -2.39 -0.02 1.27 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.05 1.03 5.23 -2.39 -0.01 1.01 16 44 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 46 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.06 0.73 4.22 -2.39 -0.01 0.72 16 48 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -76.27 388.47 -1.72 -77.99 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.45 Total: 32.32 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 5.74 Total: -8.12 kcal Atomic # 7 Polarization: -120.76 SS G_CDS: -4.65 Total: -125.41 kcal Atomic # 8 Polarization: -81.04 SS G_CDS: -4.03 Total: -85.07 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.90 Total: 43.49 kcal Atomic # 16 Polarization: 65.04 SS G_CDS: -0.24 Total: 64.80 kcal Total: -76.27 -1.72 -77.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700855640.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.750 kcal (2) G-P(sol) polarization free energy of solvation -76.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds