Wall clock time and date at job start Wed Apr 1 2020 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47133 * 2 1 4 4 N 1.46501 * 109.46826 * 239.99709 * 2 1 3 5 5 C 1.36938 * 119.99652 * 85.00296 * 4 2 1 6 6 H 1.07992 * 120.00165 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99318 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99608 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00401 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46586 * 90.00391 * 9 7 5 11 11 H 1.48498 * 109.47372 * 210.00120 * 9 7 5 12 12 H 1.48496 * 109.46982 * 330.00540 * 9 7 5 13 13 C 1.52997 * 109.47107 * 119.99708 * 2 1 3 14 14 H 1.09001 * 109.70503 * 306.42538 * 13 2 1 15 15 C 1.53628 * 109.66405 * 67.02089 * 13 2 1 16 16 C 1.53045 * 109.24129 * 174.55119 * 15 13 2 17 17 C 1.53045 * 109.53518 * 298.50970 * 16 15 13 18 18 C 1.53188 * 109.31625 * 61.36259 * 17 16 15 19 19 N 1.46919 * 108.77877 * 305.36921 * 18 17 16 20 20 C 1.34777 * 120.63414 * 233.58321 * 19 18 17 21 21 O 1.21278 * 120.00424 * 175.06583 * 20 19 18 22 22 C 1.50699 * 119.99472 * 355.06088 * 20 19 18 23 23 S 1.81406 * 109.46874 * 179.97438 * 22 20 19 24 24 O 1.42100 * 110.54111 * 68.37813 * 23 22 20 25 25 O 1.42094 * 110.54447 * 291.62330 * 23 22 20 26 26 N 1.65604 * 104.44736 * 180.02562 * 23 22 20 27 27 C 1.46492 * 120.00073 * 89.99972 * 26 23 22 28 28 C 1.46507 * 119.99958 * 269.72519 * 26 23 22 29 29 H 1.08993 * 109.47449 * 64.93927 * 1 2 3 30 30 H 1.09000 * 109.47360 * 184.94851 * 1 2 3 31 31 H 1.09003 * 109.46708 * 304.94246 * 1 2 3 32 32 H 0.97000 * 119.99650 * 264.99433 * 4 2 1 33 33 H 0.97004 * 120.00164 * 179.97438 * 8 7 5 34 34 H 1.08993 * 109.63490 * 54.55581 * 15 13 2 35 35 H 1.09006 * 109.45539 * 294.42839 * 15 13 2 36 36 H 1.08995 * 109.46100 * 178.49302 * 16 15 13 37 37 H 1.08997 * 109.45976 * 58.52717 * 16 15 13 38 38 H 1.09005 * 109.49643 * 301.41294 * 17 16 15 39 39 H 1.09000 * 109.49640 * 181.32108 * 17 16 15 40 40 H 1.09000 * 109.58871 * 185.57621 * 18 17 16 41 41 H 1.09007 * 109.69761 * 65.22508 * 18 17 16 42 42 H 1.09004 * 109.47442 * 60.00023 * 22 20 19 43 43 H 1.08994 * 109.47346 * 300.00022 * 22 20 19 44 44 H 1.08997 * 109.47202 * 269.71931 * 27 26 23 45 45 H 1.09000 * 109.47462 * 29.72677 * 27 26 23 46 46 H 1.09005 * 109.47035 * 149.72682 * 27 26 23 47 47 H 1.08997 * 109.47319 * 180.27474 * 28 26 23 48 48 H 1.09001 * 109.46804 * 300.27997 * 28 26 23 49 49 H 1.09005 * 109.47044 * 60.27417 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0402 -2.4243 7 6 2.6112 -0.6622 -3.5092 8 7 2.7364 -0.0057 -4.6432 9 14 3.0554 -2.4747 -3.4253 10 1 1.8578 -3.2929 -3.7442 11 1 4.1303 -2.7669 -4.4073 12 1 3.5308 -2.8050 -2.0579 13 6 2.0400 -0.7212 1.2493 14 1 1.5880 -0.2809 2.1381 15 6 1.6798 -2.2125 1.1685 16 6 2.3104 -2.9484 2.3530 17 6 3.8336 -2.8168 2.2852 18 6 4.2188 -1.3368 2.3749 19 7 3.5020 -0.5972 1.3273 20 6 4.1721 0.1847 0.4577 21 8 3.5816 0.7190 -0.4570 22 6 5.6553 0.3950 0.6221 23 16 6.2607 1.4865 -0.6943 24 8 5.7541 2.8030 -0.5227 25 8 6.1921 0.8336 -1.9545 26 7 7.8835 1.6308 -0.3976 27 6 8.8254 0.6848 -1.0008 28 6 8.3779 2.7083 0.4633 29 1 -0.3634 0.4353 -0.9308 30 1 -0.3634 -1.0238 0.0886 31 1 -0.3633 0.5886 0.8424 32 1 2.2490 -1.6318 -1.1525 33 1 3.0597 -0.4630 -5.4352 34 1 2.0593 -2.6309 0.2364 35 1 0.5964 -2.3267 1.2043 36 1 2.0349 -4.0023 2.3140 37 1 1.9494 -2.5131 3.2848 38 1 4.1929 -3.2296 1.3425 39 1 4.2831 -3.3608 3.1159 40 1 5.2935 -1.2294 2.2280 41 1 3.9428 -0.9440 3.3536 42 1 6.1674 -0.5654 0.5615 43 1 5.8523 0.8511 1.5922 44 1 8.9681 -0.1630 -0.3307 45 1 8.4275 0.3327 -1.9525 46 1 9.7816 1.1807 -1.1679 47 1 9.4635 2.6456 0.5368 48 1 8.0976 3.6715 0.0369 49 1 7.9401 2.6095 1.4566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707434426.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:00 Heat of formation + Delta-G solvation = -33.419406 kcal Electronic energy + Delta-G solvation = -32219.944073 eV Core-core repulsion = 28119.258976 eV Total energy + Delta-G solvation = -4100.685097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.41261 -37.25841 -36.77807 -36.21732 -35.47127 -35.42544 -32.78779 -32.12378 -30.17413 -29.74961 -28.45517 -28.18099 -24.98582 -24.66508 -23.98357 -22.83468 -21.10048 -20.19486 -18.95997 -18.47629 -17.59615 -17.27072 -16.49821 -16.32412 -16.17275 -15.47090 -15.32741 -14.68184 -14.49101 -14.42701 -14.28096 -13.83502 -13.79799 -13.36982 -13.34243 -13.15388 -12.91178 -12.79258 -12.40371 -12.38305 -12.23284 -12.22697 -11.94070 -11.63516 -11.49313 -11.43271 -11.39947 -11.33723 -11.02998 -10.82069 -10.74074 -10.67055 -10.59500 -10.53914 -10.10789 -9.87394 -9.18465 -9.15619 -8.69883 -8.60372 -8.12473 -6.81476 -5.37368 -2.66921 0.37174 2.83040 2.94167 3.17091 3.52500 3.55613 3.63723 4.13303 4.31940 4.36778 4.67788 4.73952 4.83157 4.90116 4.91607 4.93708 5.09892 5.15764 5.18825 5.30008 5.31609 5.35910 5.43099 5.49560 5.55192 5.63709 5.68246 5.71282 5.78783 5.83887 5.87415 5.91928 5.98676 6.07495 6.10576 6.33176 6.41872 6.44686 6.45233 6.66367 6.77308 7.03917 7.29498 7.63458 8.40080 8.54405 8.81316 9.59237 10.31134 10.50893 11.83411 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009699 B = 0.006017 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.091384 B = 4652.599752 C = 6031.394011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.172 3.828 3 H 0.090 0.910 4 N -0.731 5.731 5 C -0.191 4.191 6 H 0.089 0.911 7 C -0.002 4.002 8 N -0.939 5.939 9 Si 0.873 3.127 10 H -0.292 1.292 11 H -0.294 1.294 12 H -0.286 1.286 13 C 0.142 3.858 14 H 0.072 0.928 15 C -0.136 4.136 16 C -0.117 4.117 17 C -0.138 4.138 18 C 0.109 3.891 19 N -0.605 5.605 20 C 0.515 3.485 21 O -0.438 6.438 22 C -0.673 4.673 23 S 2.637 3.363 24 O -0.937 6.937 25 O -0.911 6.911 26 N -1.017 6.017 27 C 0.080 3.920 28 C 0.090 3.910 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.353 0.647 33 H 0.253 0.747 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.642 -2.543 20.749 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.063 3.937 3 H 0.107 0.893 4 N -0.375 5.375 5 C -0.321 4.321 6 H 0.106 0.894 7 C -0.195 4.195 8 N -0.590 5.590 9 Si 0.706 3.294 10 H -0.219 1.219 11 H -0.221 1.221 12 H -0.213 1.213 13 C 0.039 3.961 14 H 0.090 0.910 15 C -0.175 4.175 16 C -0.155 4.155 17 C -0.176 4.176 18 C -0.014 4.014 19 N -0.341 5.341 20 C 0.298 3.702 21 O -0.307 6.307 22 C -0.801 4.801 23 S 2.725 3.275 24 O -0.927 6.927 25 O -0.901 6.901 26 N -0.856 5.856 27 C -0.065 4.065 28 C -0.055 4.055 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.188 0.812 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.894 -1.661 19.363 21.808 hybrid contribution 0.829 -2.149 0.840 2.451 sum 10.722 -3.810 20.203 23.187 Atomic orbital electron populations 1.22553 0.99350 1.00193 1.00940 1.20693 0.90741 0.98020 0.84284 0.89256 1.42807 1.79156 1.08438 1.07068 1.18919 1.33712 0.95103 0.84390 0.89361 1.24521 1.02607 0.96384 0.96031 1.69660 1.54397 1.34758 1.00170 0.86705 0.77779 0.88590 0.76330 1.21922 1.22115 1.21296 1.21822 0.78366 0.95814 1.00091 0.91020 1.22112 1.01100 0.95408 0.98853 1.21512 0.94858 1.00439 0.98691 1.21941 0.97098 0.96043 1.02524 1.21665 0.96927 0.91752 0.91080 1.47725 1.07256 1.47018 1.32127 1.19147 0.86061 0.82055 0.82956 1.91248 1.66107 1.46074 1.27299 1.31209 1.06029 1.19402 1.23432 1.04683 0.71957 0.75390 0.75515 1.93556 1.78185 1.34433 1.86545 1.93671 1.84034 1.77350 1.35057 1.57775 1.25467 1.39506 1.62862 1.21649 0.93881 0.91944 0.99050 1.21514 1.00759 0.90132 0.93144 0.91821 0.93915 0.94525 0.81223 0.93694 0.90950 0.90465 0.91956 0.91980 0.91392 0.91082 0.90239 0.91600 0.83507 0.83574 0.93062 0.89378 0.90731 0.90424 0.91284 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.39 37.16 0.35 -2.73 16 2 C 0.17 3.50 1.88 -67.93 -0.13 3.37 16 3 H 0.09 2.04 5.90 -52.20 -0.31 1.73 16 4 N -0.73 -18.16 3.43 -53.43 -0.18 -18.34 16 5 C -0.19 -5.79 8.47 -15.06 -0.13 -5.92 16 6 H 0.09 2.95 8.06 -52.49 -0.42 2.52 16 7 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 8 N -0.94 -32.35 13.97 55.49 0.78 -31.58 16 9 Si 0.87 24.29 27.74 -169.99 -4.71 19.57 16 10 H -0.29 -7.94 7.11 56.52 0.40 -7.53 16 11 H -0.29 -8.37 7.11 56.52 0.40 -7.97 16 12 H -0.29 -7.44 6.52 56.52 0.37 -7.07 16 13 C 0.14 2.24 2.73 -67.37 -0.18 2.06 16 14 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 15 C -0.14 -1.95 4.89 -26.38 -0.13 -2.08 16 16 C -0.12 -1.26 5.88 -26.69 -0.16 -1.42 16 17 C -0.14 -1.42 6.08 -26.61 -0.16 -1.58 16 18 C 0.11 1.15 6.32 -3.72 -0.02 1.13 16 19 N -0.60 -9.24 2.96 -164.96 -0.49 -9.73 16 20 C 0.51 9.48 7.41 -10.99 -0.08 9.40 16 21 O -0.44 -10.39 8.61 5.56 0.05 -10.34 16 22 C -0.67 -9.24 5.06 36.00 0.18 -9.05 16 23 S 2.64 46.51 4.57 -107.50 -0.49 46.02 16 24 O -0.94 -19.18 17.10 -57.55 -0.98 -20.17 16 25 O -0.91 -21.04 16.57 -57.55 -0.95 -21.99 16 26 N -1.02 -12.44 3.52 -129.20 -0.45 -12.89 16 27 C 0.08 0.81 10.61 59.84 0.64 1.45 16 28 C 0.09 0.82 10.26 59.85 0.61 1.44 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.04 0.71 6.57 -51.93 -0.34 0.37 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.35 8.70 3.46 -40.82 -0.14 8.56 16 33 H 0.25 8.36 8.31 -40.82 -0.34 8.02 16 34 H 0.07 1.27 6.05 -51.93 -0.31 0.95 16 35 H 0.08 1.03 6.82 -51.93 -0.35 0.68 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.69 5.96 -51.93 -0.31 0.38 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.15 1.60 7.48 -51.92 -0.39 1.21 16 43 H 0.15 1.36 8.11 -51.93 -0.42 0.94 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 1.09 6.90 -51.93 -0.36 0.73 16 46 H 0.07 0.57 7.92 -51.93 -0.41 0.16 16 47 H 0.08 0.48 7.79 -51.93 -0.40 0.08 16 48 H 0.07 0.70 7.89 -51.93 -0.41 0.29 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -42.24 382.31 -8.97 -51.22 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.98 Total: 6.57 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 0.69 Total: -4.09 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -0.35 Total: -72.54 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -1.89 Total: -52.50 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -4.71 Total: 19.57 kcal Atomic # 16 Polarization: 46.51 SS G_CDS: -0.49 Total: 46.02 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -42.24 -8.97 -51.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707434426.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.797 kcal (2) G-P(sol) polarization free energy of solvation -42.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds