Wall clock time and date at job start Wed Apr 1 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47133 * 2 1 4 4 N 1.46501 * 109.46826 * 239.99709 * 2 1 3 5 5 C 1.36938 * 119.99652 * 85.00296 * 4 2 1 6 6 H 1.07992 * 120.00165 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99318 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99608 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00401 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46586 * 90.00391 * 9 7 5 11 11 H 1.48498 * 109.47372 * 210.00120 * 9 7 5 12 12 H 1.48496 * 109.46982 * 330.00540 * 9 7 5 13 13 C 1.52997 * 109.47107 * 119.99708 * 2 1 3 14 14 H 1.09001 * 109.70503 * 306.42538 * 13 2 1 15 15 C 1.53628 * 109.66405 * 67.02089 * 13 2 1 16 16 C 1.53045 * 109.24129 * 174.55119 * 15 13 2 17 17 C 1.53045 * 109.53518 * 298.50970 * 16 15 13 18 18 C 1.53188 * 109.31625 * 61.36259 * 17 16 15 19 19 N 1.46919 * 108.77877 * 305.36921 * 18 17 16 20 20 C 1.34777 * 120.63414 * 233.58321 * 19 18 17 21 21 O 1.21278 * 120.00424 * 175.06583 * 20 19 18 22 22 C 1.50699 * 119.99472 * 355.06088 * 20 19 18 23 23 S 1.81406 * 109.46874 * 179.97438 * 22 20 19 24 24 O 1.42100 * 110.54111 * 68.37813 * 23 22 20 25 25 O 1.42094 * 110.54447 * 291.62330 * 23 22 20 26 26 N 1.65604 * 104.44736 * 180.02562 * 23 22 20 27 27 C 1.46492 * 120.00073 * 89.99972 * 26 23 22 28 28 C 1.46507 * 119.99958 * 269.72519 * 26 23 22 29 29 H 1.08993 * 109.47449 * 64.93927 * 1 2 3 30 30 H 1.09000 * 109.47360 * 184.94851 * 1 2 3 31 31 H 1.09003 * 109.46708 * 304.94246 * 1 2 3 32 32 H 0.97000 * 119.99650 * 264.99433 * 4 2 1 33 33 H 0.97004 * 120.00164 * 179.97438 * 8 7 5 34 34 H 1.08993 * 109.63490 * 54.55581 * 15 13 2 35 35 H 1.09006 * 109.45539 * 294.42839 * 15 13 2 36 36 H 1.08995 * 109.46100 * 178.49302 * 16 15 13 37 37 H 1.08997 * 109.45976 * 58.52717 * 16 15 13 38 38 H 1.09005 * 109.49643 * 301.41294 * 17 16 15 39 39 H 1.09000 * 109.49640 * 181.32108 * 17 16 15 40 40 H 1.09000 * 109.58871 * 185.57621 * 18 17 16 41 41 H 1.09007 * 109.69761 * 65.22508 * 18 17 16 42 42 H 1.09004 * 109.47442 * 60.00023 * 22 20 19 43 43 H 1.08994 * 109.47346 * 300.00022 * 22 20 19 44 44 H 1.08997 * 109.47202 * 269.71931 * 27 26 23 45 45 H 1.09000 * 109.47462 * 29.72677 * 27 26 23 46 46 H 1.09005 * 109.47035 * 149.72682 * 27 26 23 47 47 H 1.08997 * 109.47319 * 180.27474 * 28 26 23 48 48 H 1.09001 * 109.46804 * 300.27997 * 28 26 23 49 49 H 1.09005 * 109.47044 * 60.27417 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0402 -2.4243 7 6 2.6112 -0.6622 -3.5092 8 7 2.7364 -0.0057 -4.6432 9 14 3.0554 -2.4747 -3.4253 10 1 1.8578 -3.2929 -3.7442 11 1 4.1303 -2.7669 -4.4073 12 1 3.5308 -2.8050 -2.0579 13 6 2.0400 -0.7212 1.2493 14 1 1.5880 -0.2809 2.1381 15 6 1.6798 -2.2125 1.1685 16 6 2.3104 -2.9484 2.3530 17 6 3.8336 -2.8168 2.2852 18 6 4.2188 -1.3368 2.3749 19 7 3.5020 -0.5972 1.3273 20 6 4.1721 0.1847 0.4577 21 8 3.5816 0.7190 -0.4570 22 6 5.6553 0.3950 0.6221 23 16 6.2607 1.4865 -0.6943 24 8 5.7541 2.8030 -0.5227 25 8 6.1921 0.8336 -1.9545 26 7 7.8835 1.6308 -0.3976 27 6 8.8254 0.6848 -1.0008 28 6 8.3779 2.7083 0.4633 29 1 -0.3634 0.4353 -0.9308 30 1 -0.3634 -1.0238 0.0886 31 1 -0.3633 0.5886 0.8424 32 1 2.2490 -1.6318 -1.1525 33 1 3.0597 -0.4630 -5.4352 34 1 2.0593 -2.6309 0.2364 35 1 0.5964 -2.3267 1.2043 36 1 2.0349 -4.0023 2.3140 37 1 1.9494 -2.5131 3.2848 38 1 4.1929 -3.2296 1.3425 39 1 4.2831 -3.3608 3.1159 40 1 5.2935 -1.2294 2.2280 41 1 3.9428 -0.9440 3.3536 42 1 6.1674 -0.5654 0.5615 43 1 5.8523 0.8511 1.5922 44 1 8.9681 -0.1630 -0.3307 45 1 8.4275 0.3327 -1.9525 46 1 9.7816 1.1807 -1.1679 47 1 9.4635 2.6456 0.5368 48 1 8.0976 3.6715 0.0369 49 1 7.9401 2.6095 1.4566 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707434426.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:59 Heat of formation + Delta-G solvation = -69.288235 kcal Electronic energy + Delta-G solvation = -32221.499463 eV Core-core repulsion = 28119.258976 eV Total energy + Delta-G solvation = -4102.240487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.71132 -38.52269 -38.26691 -37.23750 -37.09127 -36.79925 -34.24361 -33.84404 -31.86446 -31.05809 -29.95192 -28.93975 -26.16164 -25.57780 -25.51817 -24.53439 -22.19229 -21.68261 -20.21393 -19.80252 -19.44184 -18.75716 -17.75314 -17.60144 -17.38285 -16.76335 -16.50254 -16.37936 -15.88843 -15.43613 -15.36065 -15.30305 -15.06158 -14.76396 -14.71242 -14.36018 -14.11770 -13.97280 -13.86457 -13.62910 -13.51690 -13.31210 -13.26043 -13.16304 -13.15578 -12.86162 -12.64940 -12.56330 -12.47779 -12.44467 -12.12432 -11.99075 -11.90463 -11.78541 -11.65390 -11.46146 -11.30799 -10.85984 -10.10593 -9.99632 -9.52863 -8.93135 -7.84168 -5.08559 -0.91505 1.22832 1.33269 1.38730 1.62604 1.69524 2.03083 2.56162 2.89799 3.10301 3.26774 3.47940 3.75667 3.79323 3.87548 3.91288 3.96307 4.01010 4.14521 4.19157 4.32170 4.37647 4.52303 4.53478 4.59015 4.69995 4.74408 4.78554 4.83821 4.93474 4.95660 4.97139 4.98025 5.02072 5.06426 5.10450 5.23448 5.25146 5.43186 5.47530 5.51949 5.60061 5.82980 5.98707 6.38181 6.42175 7.22671 7.30492 8.04281 8.23988 9.41578 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009699 B = 0.006017 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.091384 B = 4652.599752 C = 6031.394011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.162 3.838 3 H 0.057 0.943 4 N -0.725 5.725 5 C -0.151 4.151 6 H 0.037 0.963 7 C -0.088 4.088 8 N -1.000 6.000 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.306 1.306 12 H -0.259 1.259 13 C 0.145 3.855 14 H 0.108 0.892 15 C -0.135 4.135 16 C -0.112 4.112 17 C -0.137 4.137 18 C 0.097 3.903 19 N -0.600 5.600 20 C 0.497 3.503 21 O -0.511 6.511 22 C -0.647 4.647 23 S 2.626 3.374 24 O -0.987 6.987 25 O -0.988 6.988 26 N -1.007 6.007 27 C 0.071 3.929 28 C 0.078 3.922 29 H 0.024 0.976 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.357 0.643 33 H 0.246 0.754 34 H 0.035 0.965 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.042 0.958 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.185 0.815 43 H 0.202 0.798 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.103 0.897 47 H 0.115 0.885 48 H 0.047 0.953 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.253 -5.579 26.818 30.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.054 3.946 3 H 0.075 0.925 4 N -0.369 5.369 5 C -0.283 4.283 6 H 0.055 0.945 7 C -0.276 4.276 8 N -0.655 5.655 9 Si 0.775 3.225 10 H -0.204 1.204 11 H -0.234 1.234 12 H -0.184 1.184 13 C 0.042 3.958 14 H 0.126 0.874 15 C -0.174 4.174 16 C -0.149 4.149 17 C -0.175 4.175 18 C -0.024 4.024 19 N -0.335 5.335 20 C 0.281 3.719 21 O -0.386 6.386 22 C -0.779 4.779 23 S 2.719 3.281 24 O -0.977 6.977 25 O -0.978 6.978 26 N -0.849 5.849 27 C -0.074 4.074 28 C -0.066 4.066 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.192 0.808 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.202 0.798 43 H 0.219 0.781 44 H 0.106 0.894 45 H 0.073 0.927 46 H 0.121 0.879 47 H 0.134 0.866 48 H 0.066 0.934 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.502 -4.709 25.528 28.393 hybrid contribution 0.338 -1.084 -0.826 1.404 sum 11.841 -5.793 24.702 27.999 Atomic orbital electron populations 1.22394 0.97632 1.01606 1.00464 1.20828 0.91809 0.96936 0.85018 0.92517 1.42694 1.79079 1.08363 1.06784 1.18679 1.30302 0.92887 0.86412 0.94531 1.25326 1.04591 1.01875 0.95786 1.69895 1.57482 1.37021 1.01108 0.85525 0.77455 0.82362 0.77203 1.20428 1.23362 1.18431 1.21766 0.79175 0.96557 0.98312 0.87419 1.22102 1.01985 0.94215 0.99054 1.21512 0.95050 1.00651 0.97721 1.21977 0.96803 0.95966 1.02793 1.22168 0.97969 0.91427 0.90826 1.47918 1.07227 1.46132 1.32220 1.19893 0.87798 0.81604 0.82576 1.91248 1.67954 1.49021 1.30424 1.30908 1.02992 1.20302 1.23659 1.04298 0.73348 0.74797 0.75679 1.93482 1.79771 1.37138 1.87312 1.93586 1.85615 1.78309 1.40270 1.57305 1.23244 1.40790 1.63550 1.21915 0.93954 0.93092 0.98425 1.21864 1.03230 0.88054 0.93481 0.95680 0.92134 0.90954 0.80768 0.94504 0.94601 0.89540 0.90957 0.89330 0.93867 0.87376 0.87829 0.88096 0.79772 0.78085 0.89356 0.92729 0.87886 0.86646 0.93433 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.78 9.39 71.98 0.68 -5.10 16 2 C 0.16 6.63 1.88 44.99 0.08 6.72 16 3 H 0.06 2.74 5.90 -6.62 -0.04 2.70 16 4 N -0.73 -37.11 3.43 -322.95 -1.11 -38.22 16 5 C -0.15 -9.78 8.47 84.03 0.71 -9.07 16 6 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 7 C -0.09 -5.96 5.50 84.86 0.47 -5.49 16 8 N -1.00 -74.09 13.97 21.65 0.30 -73.79 16 9 Si 0.94 52.52 27.74 68.60 1.90 54.43 16 10 H -0.28 -14.63 7.11 99.48 0.71 -13.92 16 11 H -0.31 -17.47 7.11 99.48 0.71 -16.76 16 12 H -0.26 -12.96 6.52 99.48 0.65 -12.32 16 13 C 0.15 4.13 2.73 45.12 0.12 4.25 16 14 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 15 C -0.14 -3.38 4.89 30.82 0.15 -3.23 16 16 C -0.11 -1.77 5.88 30.62 0.18 -1.59 16 17 C -0.14 -1.99 6.08 30.67 0.19 -1.80 16 18 C 0.10 1.43 6.32 86.36 0.55 1.97 16 19 N -0.60 -16.20 2.96 -794.22 -2.35 -18.55 16 20 C 0.50 17.68 7.41 87.66 0.65 18.33 16 21 O -0.51 -25.40 8.61 -3.02 -0.03 -25.43 16 22 C -0.65 -15.90 5.06 71.24 0.36 -15.54 16 23 S 2.63 95.29 4.57 -56.49 -0.26 95.03 16 24 O -0.99 -43.01 17.10 -127.64 -2.18 -45.19 16 25 O -0.99 -49.21 16.57 -127.64 -2.11 -51.32 16 26 N -1.01 -23.28 3.52 -562.69 -1.98 -25.26 16 27 C 0.07 1.30 10.61 127.77 1.36 2.66 16 28 C 0.08 1.23 10.26 127.77 1.31 2.54 16 29 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.93 6.57 -2.39 -0.02 1.92 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.36 17.65 3.46 -92.71 -0.32 17.33 16 33 H 0.25 17.51 8.31 -92.71 -0.77 16.74 16 34 H 0.04 1.16 6.05 -2.39 -0.01 1.15 16 35 H 0.09 1.97 6.82 -2.38 -0.02 1.96 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.10 1.04 5.96 -2.39 -0.01 1.03 16 41 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.18 3.15 7.48 -2.39 -0.02 3.13 16 43 H 0.20 2.61 8.11 -2.39 -0.02 2.59 16 44 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.05 1.40 6.90 -2.39 -0.02 1.38 16 46 H 0.10 1.30 7.92 -2.38 -0.02 1.28 16 47 H 0.12 0.97 7.79 -2.39 -0.02 0.95 16 48 H 0.05 0.95 7.89 -2.39 -0.02 0.94 16 49 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -108.64 382.31 -0.47 -109.11 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.54 Total: 24.54 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 6.80 Total: -5.34 kcal Atomic # 7 Polarization: -150.69 SS G_CDS: -5.14 Total: -155.82 kcal Atomic # 8 Polarization: -117.62 SS G_CDS: -4.32 Total: -121.94 kcal Atomic # 14 Polarization: 52.52 SS G_CDS: 1.90 Total: 54.43 kcal Atomic # 16 Polarization: 95.29 SS G_CDS: -0.26 Total: 95.03 kcal Total: -108.64 -0.47 -109.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707434426.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.821 kcal (2) G-P(sol) polarization free energy of solvation -108.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds