Wall clock time and date at job start Wed Apr 1 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65599 * 119.99561 * 2 1 4 4 O 1.42105 * 104.27886 * 308.92626 * 3 2 1 5 5 O 1.42102 * 104.27942 * 181.07321 * 3 2 1 6 6 C 1.81395 * 104.45178 * 65.00070 * 3 2 1 7 7 C 1.53009 * 109.47358 * 180.02562 * 6 3 2 8 8 C 1.50692 * 109.47148 * 180.02562 * 7 6 3 9 9 O 1.21283 * 120.00327 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00331 * 179.97438 * 8 7 6 11 11 C 1.46930 * 120.62578 * 5.79338 * 10 8 7 12 12 C 1.53191 * 108.89209 * 233.67841 * 11 10 8 13 13 C 1.53042 * 109.31017 * 305.29285 * 12 11 10 14 14 C 1.53038 * 109.53916 * 61.36537 * 13 12 11 15 15 C 1.47205 * 120.81713 * 185.93304 * 10 8 7 16 16 H 1.09001 * 109.55561 * 246.15899 * 15 10 8 17 17 C 1.52993 * 109.65410 * 6.46544 * 15 10 8 18 18 H 1.08999 * 109.47302 * 302.06356 * 17 15 10 19 19 C 1.52997 * 109.47301 * 182.05721 * 17 15 10 20 20 N 1.46502 * 109.46683 * 62.05814 * 17 15 10 21 21 C 1.36938 * 119.99795 * 204.99809 * 20 17 15 22 22 H 1.07998 * 120.00532 * 0.02562 * 21 20 17 23 23 C 1.38814 * 120.00112 * 180.02562 * 21 20 17 24 24 N 1.31624 * 119.99780 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00300 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47436 * 59.99673 * 25 23 21 27 27 H 1.48502 * 109.47307 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.47139 * 300.00015 * 25 23 21 29 29 H 1.08997 * 109.47597 * 60.00368 * 1 2 3 30 30 H 1.09001 * 109.46868 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47436 * 299.99818 * 1 2 3 32 32 H 0.96990 * 120.00482 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.47182 * 60.00039 * 6 3 2 34 34 H 1.09001 * 109.47479 * 299.99897 * 6 3 2 35 35 H 1.08995 * 109.47043 * 59.99831 * 7 6 3 36 36 H 1.09000 * 109.46882 * 299.99795 * 7 6 3 37 37 H 1.08999 * 109.58912 * 113.81616 * 11 10 8 38 38 H 1.09000 * 109.58983 * 353.53508 * 11 10 8 39 39 H 1.08999 * 109.50381 * 65.24171 * 12 11 10 40 40 H 1.08998 * 109.49645 * 185.34925 * 12 11 10 41 41 H 1.09004 * 109.45861 * 181.39105 * 13 12 11 42 42 H 1.09005 * 109.46295 * 301.34610 * 13 12 11 43 43 H 1.08995 * 109.49662 * 58.58864 * 14 13 12 44 44 H 1.09001 * 109.49766 * 178.68030 * 14 13 12 45 45 H 1.08994 * 109.46679 * 64.82879 * 19 17 15 46 46 H 1.09004 * 109.47013 * 184.82489 * 19 17 15 47 47 H 1.08996 * 109.47111 * 304.82754 * 19 17 15 48 48 H 0.96995 * 120.00689 * 25.00337 * 20 17 15 49 49 H 0.96996 * 119.99757 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7187 2.1703 -1.0714 5 8 3.6606 1.0494 -0.0258 6 6 1.8763 2.1974 1.5920 7 6 2.5888 3.5460 1.7131 8 6 2.2432 4.1797 3.0359 9 8 1.4998 3.6092 3.8059 10 7 2.7601 5.3805 3.3635 11 6 3.5587 6.1416 2.3930 12 6 4.9042 6.5010 3.0311 13 6 4.6581 7.2349 4.3514 14 6 3.8973 6.3185 5.3123 15 6 2.5404 5.9569 4.7001 16 1 1.9275 6.8541 4.6143 17 6 1.8317 4.9349 5.5910 18 1 0.8878 4.6438 5.1302 19 6 1.5596 5.5557 6.9626 20 7 2.6824 3.7528 5.7501 21 6 2.1200 2.5388 6.0423 22 1 1.0493 2.4527 6.1550 23 6 2.9260 1.4189 6.1935 24 7 4.2309 1.5238 6.0567 25 14 2.1588 -0.2372 6.5913 26 1 1.2148 -0.6180 5.5100 27 1 3.2262 -1.2639 6.7002 28 1 1.4254 -0.1464 7.8794 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.9500 -0.8399 0.0004 33 1 2.1957 1.5432 2.4032 34 1 0.7986 2.3497 1.6510 35 1 2.2689 4.2000 0.9019 36 1 3.6665 3.3941 1.6540 37 1 3.0288 7.0539 2.1191 38 1 3.7269 5.5355 1.5028 39 1 5.4716 5.5901 3.2216 40 1 5.4664 7.1460 2.3558 41 1 5.6138 7.5137 4.7955 42 1 4.0696 8.1330 4.1636 43 1 4.4741 5.4092 5.4813 44 1 3.7430 6.8334 6.2606 45 1 0.8584 6.3831 6.8542 46 1 1.1328 4.8020 7.6244 47 1 2.4938 5.9243 7.3864 48 1 3.6439 3.8299 5.6487 49 1 4.7940 0.7411 6.1621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712997190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:19 Heat of formation + Delta-G solvation = -63.163545 kcal Electronic energy + Delta-G solvation = -31464.496711 eV Core-core repulsion = 27362.521811 eV Total energy + Delta-G solvation = -4101.974900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.15413 -37.06552 -37.04918 -35.93118 -35.35063 -35.03106 -32.88910 -32.34298 -32.03341 -29.64920 -28.03051 -26.05848 -25.90364 -24.09307 -23.92617 -22.87216 -20.71232 -19.93056 -19.26150 -18.55608 -17.69568 -16.97321 -16.89868 -16.33488 -15.80507 -15.56006 -15.24957 -14.75842 -14.54314 -14.17697 -14.07657 -13.98186 -13.82389 -13.53802 -13.28113 -13.05907 -12.91178 -12.56826 -12.31223 -12.12829 -12.11031 -12.06038 -11.96500 -11.82188 -11.66036 -11.37795 -11.21148 -11.14798 -10.85488 -10.73827 -10.70130 -10.65394 -10.52239 -10.33742 -10.13362 -9.81083 -9.61183 -9.39370 -8.76878 -8.20954 -7.98499 -6.64086 -5.54573 -2.77030 0.30855 2.71763 3.28190 3.46510 3.51497 3.56288 3.57157 3.80422 4.29839 4.59011 4.75483 4.83033 4.89376 4.94757 4.98011 5.06431 5.17077 5.31349 5.34511 5.39642 5.50785 5.56834 5.59771 5.65763 5.68709 5.74116 5.76115 5.79879 5.90086 6.01831 6.08725 6.12646 6.16397 6.26810 6.30568 6.43642 6.50654 6.60342 6.85523 6.85943 7.00582 7.07062 7.40271 7.94470 7.99217 8.64272 8.97278 9.75194 10.32967 10.69520 11.69471 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008623 B = 0.005321 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.267973 B = 5261.063875 C = 7404.011570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.124 6.124 3 S 2.610 3.390 4 O -0.964 6.964 5 O -0.958 6.958 6 C -0.602 4.602 7 C -0.129 4.129 8 C 0.513 3.487 9 O -0.456 6.456 10 N -0.614 5.614 11 C 0.109 3.891 12 C -0.137 4.137 13 C -0.116 4.116 14 C -0.133 4.133 15 C 0.148 3.852 16 H 0.061 0.939 17 C 0.166 3.834 18 H 0.085 0.915 19 C -0.171 4.171 20 N -0.707 5.707 21 C -0.178 4.178 22 H 0.064 0.936 23 C -0.030 4.030 24 N -0.946 5.946 25 Si 0.896 3.104 26 H -0.292 1.292 27 H -0.296 1.296 28 H -0.292 1.292 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.418 0.582 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.032 0.968 46 H 0.055 0.945 47 H 0.043 0.957 48 H 0.378 0.622 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 7.758 -11.499 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.882 5.882 3 S 2.703 3.297 4 O -0.954 6.954 5 O -0.948 6.948 6 C -0.733 4.733 7 C -0.170 4.170 8 C 0.297 3.703 9 O -0.325 6.325 10 N -0.351 5.351 11 C -0.015 4.015 12 C -0.176 4.176 13 C -0.154 4.154 14 C -0.172 4.172 15 C 0.044 3.956 16 H 0.079 0.921 17 C 0.056 3.944 18 H 0.103 0.897 19 C -0.232 4.232 20 N -0.349 5.349 21 C -0.311 4.311 22 H 0.082 0.918 23 C -0.223 4.223 24 N -0.598 5.598 25 Si 0.729 3.271 26 H -0.219 1.219 27 H -0.222 1.222 28 H -0.219 1.219 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.251 0.749 33 H 0.170 0.830 34 H 0.154 0.846 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.213 0.787 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.174 7.710 -11.763 14.671 hybrid contribution 0.011 -1.363 0.925 1.647 sum -4.163 6.347 -10.838 13.232 Atomic orbital electron populations 1.21506 0.78842 1.04205 1.01955 1.55339 1.15939 1.24647 1.92321 1.04983 0.73725 0.73967 0.77048 1.93573 1.78992 1.72363 1.50441 1.93614 1.32672 1.81102 1.87414 1.30303 1.11369 1.08243 1.23347 1.21336 1.02192 0.94275 0.99246 1.19836 0.82437 0.80581 0.87411 1.90871 1.33477 1.60197 1.47967 1.47909 1.53912 1.19496 1.13777 1.21636 0.91755 0.96235 0.91889 1.21931 0.97060 1.01256 0.97312 1.21499 1.00188 0.98083 0.95624 1.21999 0.96667 1.00424 0.98086 1.21590 0.95841 0.96266 0.81894 0.92061 1.20727 0.96542 0.86277 0.90835 0.89732 1.22610 0.99820 0.99508 1.01222 1.42396 1.05054 1.03334 1.84069 1.19038 0.91496 0.85632 1.34895 0.91801 1.24570 0.95430 0.97229 1.05085 1.69621 1.02300 1.28529 1.59312 0.86413 0.77526 0.85199 0.77990 1.21912 1.22186 1.21898 0.91509 0.90099 0.91928 0.74873 0.83016 0.84641 0.88775 0.88105 0.91938 0.90373 0.91029 0.91362 0.92146 0.92430 0.90273 0.91070 0.94933 0.92611 0.93789 0.78680 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 11.03 59.85 0.66 1.38 16 2 N -1.12 -12.23 6.08 -16.63 -0.10 -12.33 16 3 S 2.61 34.84 5.46 -107.50 -0.59 34.26 16 4 O -0.96 -14.54 17.73 -57.54 -1.02 -15.56 16 5 O -0.96 -16.03 18.08 -57.54 -1.04 -17.07 16 6 C -0.60 -8.57 5.31 37.16 0.20 -8.37 16 7 C -0.13 -1.87 4.06 -27.88 -0.11 -1.99 16 8 C 0.51 9.15 7.13 -10.99 -0.08 9.07 16 9 O -0.46 -9.81 9.21 5.56 0.05 -9.75 16 10 N -0.61 -9.54 2.98 -165.02 -0.49 -10.04 16 11 C 0.11 1.27 6.34 -3.71 -0.02 1.25 16 12 C -0.14 -1.57 6.08 -26.61 -0.16 -1.74 16 13 C -0.12 -1.38 5.88 -26.69 -0.16 -1.53 16 14 C -0.13 -2.01 4.82 -26.61 -0.13 -2.14 16 15 C 0.15 2.37 2.74 -67.45 -0.18 2.19 16 16 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 17 C 0.17 3.30 1.89 -67.93 -0.13 3.17 16 18 H 0.09 1.85 5.90 -52.05 -0.31 1.55 16 19 C -0.17 -3.11 9.32 37.16 0.35 -2.76 16 20 N -0.71 -17.14 3.48 -53.43 -0.19 -17.33 16 21 C -0.18 -4.92 8.11 -15.06 -0.12 -5.04 16 22 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.03 -0.86 5.50 -17.43 -0.10 -0.96 16 24 N -0.95 -28.59 13.06 55.49 0.72 -27.87 16 25 Si 0.90 22.97 29.55 -169.99 -5.02 17.94 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.52 7.73 -51.93 -0.40 0.12 16 32 H 0.42 3.97 8.92 -34.46 -0.31 3.67 16 33 H 0.15 2.55 8.10 -51.93 -0.42 2.13 16 34 H 0.14 1.72 7.73 -51.92 -0.40 1.31 16 35 H 0.09 1.06 7.70 -51.93 -0.40 0.66 16 36 H 0.10 1.42 7.93 -51.93 -0.41 1.01 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.80 5.93 -51.93 -0.31 0.50 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.47 6.22 -51.93 -0.32 1.15 16 44 H 0.07 1.02 6.69 -51.93 -0.35 0.68 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.04 0.77 6.40 -51.93 -0.33 0.44 16 48 H 0.38 9.83 5.84 -40.82 -0.24 9.59 16 49 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -36.66 387.71 -9.79 -46.45 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -7.97 Total: 12.92 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 0.01 Total: -7.46 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: -0.05 Total: -67.57 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -2.01 Total: -42.39 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Atomic # 16 Polarization: 34.84 SS G_CDS: -0.59 Total: 34.26 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.66 -9.79 -46.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712997190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.713 kcal (2) G-P(sol) polarization free energy of solvation -36.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds