Wall clock time and date at job start Wed Apr 1 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65599 * 119.99561 * 2 1 4 4 O 1.42105 * 104.27886 * 308.92626 * 3 2 1 5 5 O 1.42102 * 104.27942 * 181.07321 * 3 2 1 6 6 C 1.81395 * 104.45178 * 65.00070 * 3 2 1 7 7 C 1.53009 * 109.47358 * 180.02562 * 6 3 2 8 8 C 1.50692 * 109.47148 * 180.02562 * 7 6 3 9 9 O 1.21283 * 120.00327 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00331 * 179.97438 * 8 7 6 11 11 C 1.46930 * 120.62578 * 5.79338 * 10 8 7 12 12 C 1.53191 * 108.89209 * 233.67841 * 11 10 8 13 13 C 1.53042 * 109.31017 * 305.29285 * 12 11 10 14 14 C 1.53038 * 109.53916 * 61.36537 * 13 12 11 15 15 C 1.47205 * 120.81713 * 185.93304 * 10 8 7 16 16 H 1.09001 * 109.55561 * 246.15899 * 15 10 8 17 17 C 1.52993 * 109.65410 * 6.46544 * 15 10 8 18 18 H 1.08999 * 109.47302 * 302.06356 * 17 15 10 19 19 C 1.52997 * 109.47301 * 182.05721 * 17 15 10 20 20 N 1.46502 * 109.46683 * 62.05814 * 17 15 10 21 21 C 1.36938 * 119.99795 * 204.99809 * 20 17 15 22 22 H 1.07998 * 120.00532 * 0.02562 * 21 20 17 23 23 C 1.38814 * 120.00112 * 180.02562 * 21 20 17 24 24 N 1.31624 * 119.99780 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00300 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47436 * 59.99673 * 25 23 21 27 27 H 1.48502 * 109.47307 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.47139 * 300.00015 * 25 23 21 29 29 H 1.08997 * 109.47597 * 60.00368 * 1 2 3 30 30 H 1.09001 * 109.46868 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47436 * 299.99818 * 1 2 3 32 32 H 0.96990 * 120.00482 * 179.97438 * 2 1 3 33 33 H 1.08995 * 109.47182 * 60.00039 * 6 3 2 34 34 H 1.09001 * 109.47479 * 299.99897 * 6 3 2 35 35 H 1.08995 * 109.47043 * 59.99831 * 7 6 3 36 36 H 1.09000 * 109.46882 * 299.99795 * 7 6 3 37 37 H 1.08999 * 109.58912 * 113.81616 * 11 10 8 38 38 H 1.09000 * 109.58983 * 353.53508 * 11 10 8 39 39 H 1.08999 * 109.50381 * 65.24171 * 12 11 10 40 40 H 1.08998 * 109.49645 * 185.34925 * 12 11 10 41 41 H 1.09004 * 109.45861 * 181.39105 * 13 12 11 42 42 H 1.09005 * 109.46295 * 301.34610 * 13 12 11 43 43 H 1.08995 * 109.49662 * 58.58864 * 14 13 12 44 44 H 1.09001 * 109.49766 * 178.68030 * 14 13 12 45 45 H 1.08994 * 109.46679 * 64.82879 * 19 17 15 46 46 H 1.09004 * 109.47013 * 184.82489 * 19 17 15 47 47 H 1.08996 * 109.47111 * 304.82754 * 19 17 15 48 48 H 0.96995 * 120.00689 * 25.00337 * 20 17 15 49 49 H 0.96996 * 119.99757 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7187 2.1703 -1.0714 5 8 3.6606 1.0494 -0.0258 6 6 1.8763 2.1974 1.5920 7 6 2.5888 3.5460 1.7131 8 6 2.2432 4.1797 3.0359 9 8 1.4998 3.6092 3.8059 10 7 2.7601 5.3805 3.3635 11 6 3.5587 6.1416 2.3930 12 6 4.9042 6.5010 3.0311 13 6 4.6581 7.2349 4.3514 14 6 3.8973 6.3185 5.3123 15 6 2.5404 5.9569 4.7001 16 1 1.9275 6.8541 4.6143 17 6 1.8317 4.9349 5.5910 18 1 0.8878 4.6438 5.1302 19 6 1.5596 5.5557 6.9626 20 7 2.6824 3.7528 5.7501 21 6 2.1200 2.5388 6.0423 22 1 1.0493 2.4527 6.1550 23 6 2.9260 1.4189 6.1935 24 7 4.2309 1.5238 6.0567 25 14 2.1588 -0.2372 6.5913 26 1 1.2148 -0.6180 5.5100 27 1 3.2262 -1.2639 6.7002 28 1 1.4254 -0.1464 7.8794 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.9500 -0.8399 0.0004 33 1 2.1957 1.5432 2.4032 34 1 0.7986 2.3497 1.6510 35 1 2.2689 4.2000 0.9019 36 1 3.6665 3.3941 1.6540 37 1 3.0288 7.0539 2.1191 38 1 3.7269 5.5355 1.5028 39 1 5.4716 5.5901 3.2216 40 1 5.4664 7.1460 2.3558 41 1 5.6138 7.5137 4.7955 42 1 4.0696 8.1330 4.1636 43 1 4.4741 5.4092 5.4813 44 1 3.7430 6.8334 6.2606 45 1 0.8584 6.3831 6.8542 46 1 1.1328 4.8020 7.6244 47 1 2.4938 5.9243 7.3864 48 1 3.6439 3.8299 5.6487 49 1 4.7940 0.7411 6.1621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712997190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:18 Heat of formation + Delta-G solvation = -91.787225 kcal Electronic energy + Delta-G solvation = -31465.737927 eV Core-core repulsion = 27362.521811 eV Total energy + Delta-G solvation = -4103.216116 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.45773 -38.33786 -38.24771 -37.12923 -36.90976 -35.90484 -34.42110 -33.73775 -33.41770 -31.23310 -29.64010 -27.12450 -26.83872 -25.80628 -25.18216 -24.33682 -21.84669 -21.33307 -20.35487 -19.79510 -19.05404 -18.73832 -18.06301 -17.44665 -17.03964 -16.79733 -16.49505 -16.27935 -15.83185 -15.67095 -15.49175 -15.13377 -14.86406 -14.78249 -14.53895 -14.38077 -14.07827 -13.81692 -13.78873 -13.49003 -13.29404 -13.28586 -13.18363 -13.14806 -13.00764 -12.77462 -12.62950 -12.58107 -12.38280 -12.30403 -12.16541 -11.94092 -11.87706 -11.68066 -11.53545 -11.34190 -11.21969 -10.80272 -10.49757 -9.65422 -9.31979 -8.63077 -7.75217 -4.94500 -0.79532 1.43344 1.45098 1.51341 1.71504 1.97715 2.27436 2.66425 2.69720 3.19478 3.43214 3.57973 3.67859 3.85803 3.95825 4.01731 4.09524 4.14107 4.17905 4.29112 4.34029 4.42752 4.46563 4.55751 4.63548 4.67563 4.74765 4.83150 4.87038 4.91811 4.94996 4.97317 4.98706 5.05253 5.13777 5.17422 5.28550 5.32955 5.47928 5.57081 5.62720 5.69393 5.98299 6.04806 6.47313 6.73948 7.52435 7.65436 8.32907 8.57348 9.49066 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008623 B = 0.005321 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.267973 B = 5261.063875 C = 7404.011570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -1.120 6.120 3 S 2.642 3.358 4 O -0.975 6.975 5 O -0.993 6.993 6 C -0.601 4.601 7 C -0.134 4.134 8 C 0.501 3.499 9 O -0.506 6.506 10 N -0.614 5.614 11 C 0.099 3.901 12 C -0.136 4.136 13 C -0.110 4.110 14 C -0.128 4.128 15 C 0.150 3.850 16 H 0.091 0.909 17 C 0.160 3.840 18 H 0.065 0.935 19 C -0.162 4.162 20 N -0.708 5.708 21 C -0.159 4.159 22 H 0.054 0.946 23 C -0.091 4.091 24 N -0.978 5.978 25 Si 0.948 3.052 26 H -0.283 1.283 27 H -0.302 1.302 28 H -0.289 1.289 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.425 0.575 33 H 0.121 0.879 34 H 0.148 0.852 35 H 0.132 0.868 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.041 0.959 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.035 0.965 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.027 0.973 47 H 0.047 0.953 48 H 0.368 0.632 49 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 9.860 -13.048 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.882 5.882 3 S 2.734 3.266 4 O -0.965 6.965 5 O -0.983 6.983 6 C -0.731 4.731 7 C -0.176 4.176 8 C 0.287 3.713 9 O -0.380 6.380 10 N -0.350 5.350 11 C -0.022 4.022 12 C -0.174 4.174 13 C -0.148 4.148 14 C -0.166 4.166 15 C 0.047 3.953 16 H 0.109 0.891 17 C 0.052 3.948 18 H 0.083 0.917 19 C -0.222 4.222 20 N -0.348 5.348 21 C -0.292 4.292 22 H 0.072 0.928 23 C -0.281 4.281 24 N -0.633 5.633 25 Si 0.780 3.220 26 H -0.210 1.210 27 H -0.229 1.229 28 H -0.216 1.216 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.260 0.740 33 H 0.139 0.861 34 H 0.166 0.834 35 H 0.150 0.850 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.060 0.940 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.046 0.954 47 H 0.066 0.934 48 H 0.201 0.799 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.100 9.874 -13.322 17.349 hybrid contribution 0.196 -1.918 1.382 2.372 sum -4.903 7.957 -11.940 15.163 Atomic orbital electron populations 1.21792 0.77310 1.06092 1.02480 1.55148 1.17014 1.24036 1.91963 1.03956 0.72676 0.73931 0.76079 1.93550 1.79075 1.73192 1.50724 1.93562 1.35209 1.81802 1.87733 1.30290 1.12192 1.07794 1.22815 1.21462 1.02361 0.94897 0.98857 1.20428 0.81798 0.80980 0.88100 1.90839 1.35858 1.61599 1.49682 1.48048 1.53585 1.19182 1.14178 1.22003 0.91609 0.97259 0.91372 1.21935 0.96939 1.00583 0.97914 1.21480 1.00449 0.98038 0.94784 1.21917 0.95881 0.99342 0.99488 1.21523 0.96390 0.95739 0.81683 0.89083 1.20839 0.95573 0.85952 0.92422 0.91690 1.22453 1.00693 0.99676 0.99371 1.42470 1.04890 1.03830 1.83621 1.19172 0.90902 0.86971 1.32138 0.92779 1.25138 0.95888 1.00056 1.07014 1.69775 1.03265 1.28490 1.61813 0.85547 0.76644 0.81875 0.77921 1.21036 1.22912 1.21634 0.90894 0.87659 0.91558 0.73998 0.86098 0.83363 0.85003 0.88074 0.88741 0.88980 0.94005 0.88049 0.91416 0.89761 0.94598 0.90442 0.91479 0.95358 0.93369 0.79866 0.95156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.11 11.03 127.77 1.41 2.52 16 2 N -1.12 -23.33 6.08 -206.54 -1.25 -24.59 16 3 S 2.64 69.06 5.46 -56.49 -0.31 68.75 16 4 O -0.98 -27.97 17.73 -127.65 -2.26 -30.24 16 5 O -0.99 -33.33 18.08 -127.65 -2.31 -35.64 16 6 C -0.60 -17.23 5.31 71.99 0.38 -16.85 16 7 C -0.13 -3.84 4.06 29.85 0.12 -3.71 16 8 C 0.50 17.82 7.13 87.65 0.62 18.44 16 9 O -0.51 -22.33 9.21 -3.04 -0.03 -22.36 16 10 N -0.61 -18.22 2.98 -794.38 -2.36 -20.58 16 11 C 0.10 2.02 6.34 86.36 0.55 2.56 16 12 C -0.14 -2.74 6.08 30.67 0.19 -2.55 16 13 C -0.11 -2.27 5.88 30.62 0.18 -2.09 16 14 C -0.13 -3.69 4.82 30.67 0.15 -3.55 16 15 C 0.15 4.60 2.74 44.92 0.12 4.72 16 16 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 17 C 0.16 6.40 1.89 44.99 0.08 6.48 16 18 H 0.07 2.90 5.90 -4.24 -0.03 2.87 16 19 C -0.16 -5.77 9.32 71.98 0.67 -5.10 16 20 N -0.71 -35.46 3.48 -322.95 -1.13 -36.58 16 21 C -0.16 -9.03 8.11 84.03 0.68 -8.35 16 22 H 0.05 3.14 7.83 -2.91 -0.02 3.12 16 23 C -0.09 -5.43 5.50 84.86 0.47 -4.96 16 24 N -0.98 -61.52 13.06 21.65 0.28 -61.24 16 25 Si 0.95 48.61 29.55 68.60 2.03 50.64 16 26 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 28 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 29 H 0.07 1.10 8.04 -2.39 -0.02 1.08 16 30 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.02 7.73 -2.38 -0.02 1.00 16 32 H 0.42 7.73 8.92 -96.76 -0.86 6.87 16 33 H 0.12 4.29 8.10 -2.39 -0.02 4.27 16 34 H 0.15 3.74 7.73 -2.39 -0.02 3.73 16 35 H 0.13 2.67 7.70 -2.39 -0.02 2.65 16 36 H 0.10 2.86 7.93 -2.39 -0.02 2.84 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.09 1.62 5.93 -2.39 -0.01 1.60 16 39 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.04 1.36 6.22 -2.39 -0.01 1.34 16 44 H 0.08 2.10 6.69 -2.39 -0.02 2.08 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.05 1.66 6.40 -2.39 -0.02 1.64 16 48 H 0.37 19.95 5.84 -92.71 -0.54 19.41 16 49 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -82.56 387.71 -2.17 -84.73 By element: Atomic # 1 Polarization: 39.99 SS G_CDS: -0.45 Total: 39.54 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 5.63 Total: -12.44 kcal Atomic # 7 Polarization: -138.53 SS G_CDS: -4.46 Total: -142.99 kcal Atomic # 8 Polarization: -83.64 SS G_CDS: -4.60 Total: -88.24 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 2.03 Total: 50.64 kcal Atomic # 16 Polarization: 69.06 SS G_CDS: -0.31 Total: 68.75 kcal Total: -82.56 -2.17 -84.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712997190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.060 kcal (2) G-P(sol) polarization free energy of solvation -82.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds