Wall clock time and date at job start Wed Apr 1 2020 05:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 S 1.65600 * 119.99923 * 2 1 4 4 O 1.42105 * 104.27499 * 308.92401 * 3 2 1 5 5 O 1.42100 * 104.27774 * 181.07174 * 3 2 1 6 6 C 1.81395 * 104.45369 * 64.99844 * 3 2 1 7 7 C 1.53004 * 109.47373 * 180.02562 * 6 3 2 8 8 C 1.50696 * 109.46812 * 179.97438 * 7 6 3 9 9 O 1.21280 * 120.00644 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99421 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63393 * 354.27268 * 10 8 7 12 12 C 1.53195 * 108.77625 * 233.63068 * 11 10 8 13 13 C 1.53043 * 109.31227 * 305.36197 * 12 11 10 14 14 C 1.53041 * 109.53713 * 61.36660 * 13 12 11 15 15 C 1.46932 * 120.62883 * 174.29432 * 10 8 7 16 16 H 1.09000 * 109.58339 * 246.29998 * 15 10 8 17 17 C 1.52995 * 109.58846 * 6.58248 * 15 10 8 18 18 H 1.09004 * 109.47263 * 52.70998 * 17 15 10 19 19 C 1.52992 * 109.47274 * 172.71315 * 17 15 10 20 20 N 1.46499 * 109.47303 * 292.71562 * 17 15 10 21 21 C 1.36938 * 120.00294 * 162.43979 * 20 17 15 22 22 H 1.07999 * 119.99734 * 359.72167 * 21 20 17 23 23 C 1.38814 * 120.00147 * 179.72497 * 21 20 17 24 24 N 1.31615 * 119.99832 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99837 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47296 * 89.99973 * 25 23 21 27 27 H 1.48502 * 109.46736 * 210.00170 * 25 23 21 28 28 H 1.48499 * 109.47283 * 329.99615 * 25 23 21 29 29 H 1.08999 * 109.46974 * 60.00557 * 1 2 3 30 30 H 1.08998 * 109.46959 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47560 * 300.00451 * 1 2 3 32 32 H 0.96999 * 120.00396 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47359 * 59.99443 * 6 3 2 34 34 H 1.09008 * 109.47051 * 299.99735 * 6 3 2 35 35 H 1.08996 * 109.47139 * 59.99714 * 7 6 3 36 36 H 1.09001 * 109.46487 * 299.99274 * 7 6 3 37 37 H 1.08996 * 109.58631 * 353.41748 * 11 10 8 38 38 H 1.09000 * 109.58509 * 113.69994 * 11 10 8 39 39 H 1.08998 * 109.49535 * 65.31335 * 12 11 10 40 40 H 1.08996 * 109.49351 * 185.41246 * 12 11 10 41 41 H 1.08994 * 109.46034 * 181.38319 * 13 12 11 42 42 H 1.08993 * 109.46169 * 301.34545 * 13 12 11 43 43 H 1.08996 * 109.50226 * 178.68344 * 14 13 12 44 44 H 1.09006 * 109.49938 * 58.58257 * 14 13 12 45 45 H 1.08999 * 109.47008 * 53.77208 * 19 17 15 46 46 H 1.09002 * 109.46996 * 173.76965 * 19 17 15 47 47 H 1.09004 * 109.47432 * 293.76551 * 19 17 15 48 48 H 0.97006 * 119.99847 * 342.16550 * 20 17 15 49 49 H 0.97003 * 119.99657 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7188 2.1702 -1.0714 5 8 3.6606 1.0492 -0.0258 6 6 1.8764 2.1974 1.5919 7 6 2.5889 3.5460 1.7130 8 6 2.2423 4.1803 3.0353 9 8 1.4982 3.6102 3.8049 10 7 2.7592 5.3812 3.3626 11 6 3.7579 6.0267 2.4997 12 6 4.9854 6.3804 3.3454 13 6 4.5481 7.2272 4.5429 14 6 3.5784 6.4228 5.4117 15 6 2.3350 6.0695 4.5895 16 1 1.7954 6.9802 4.3295 17 6 1.4250 5.1493 5.4054 18 1 1.9205 4.1905 5.5581 19 6 1.1321 5.7936 6.7618 20 7 0.1680 4.9396 4.6828 21 6 -0.6483 3.8925 5.0182 22 1 -0.3632 3.2186 5.8125 23 6 -1.8420 3.6972 4.3372 24 7 -2.6263 2.6905 4.6594 25 14 -2.3346 4.8624 2.9628 26 1 -1.8032 4.3574 1.6714 27 1 -3.8156 4.9445 2.8905 28 1 -1.7768 6.2117 3.2339 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.9500 -0.8400 0.0004 33 1 2.1956 1.5432 2.4032 34 1 0.7986 2.3499 1.6509 35 1 2.2692 4.2000 0.9018 36 1 3.6667 3.3939 1.6540 37 1 4.0484 5.3429 1.7022 38 1 3.3356 6.9339 2.0675 39 1 5.4585 5.4650 3.7005 40 1 5.6938 6.9454 2.7397 41 1 5.4227 7.5009 5.1328 42 1 4.0529 8.1307 4.1872 43 1 3.2856 7.0178 6.2767 44 1 4.0649 5.5068 5.7474 45 1 0.7382 6.7985 6.6092 46 1 0.3975 5.1931 7.2983 47 1 2.0518 5.8484 7.3443 48 1 -0.0880 5.5449 3.9692 49 1 -3.4606 2.5543 4.1837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712997192.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:40 Heat of formation + Delta-G solvation = -52.338683 kcal Electronic energy + Delta-G solvation = -31394.000232 eV Core-core repulsion = 27292.494733 eV Total energy + Delta-G solvation = -4101.505499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.32494 -37.19150 -37.10860 -35.98466 -35.60827 -34.99928 -33.00412 -32.46808 -32.17490 -30.28328 -28.24507 -26.02857 -25.98144 -24.30898 -24.01196 -22.40887 -20.73442 -20.09199 -19.41280 -18.96675 -17.89887 -17.26613 -16.87100 -16.35515 -15.87961 -15.70388 -15.37851 -14.89859 -14.70474 -14.42087 -14.12886 -14.00395 -13.82823 -13.59374 -13.27845 -13.02360 -12.85291 -12.71758 -12.42910 -12.35685 -12.31874 -12.15569 -12.11371 -12.01274 -11.65182 -11.48199 -11.45317 -11.41875 -11.02766 -10.94720 -10.80687 -10.76676 -10.71778 -10.47326 -10.15894 -9.86877 -9.58691 -9.40029 -8.77888 -8.41561 -8.12119 -6.83510 -5.56001 -2.83834 0.26160 2.68680 3.23210 3.27206 3.42379 3.46037 3.52074 3.74112 4.25841 4.50676 4.66283 4.74150 4.75856 4.80046 4.91895 4.97503 5.01042 5.07788 5.23976 5.32617 5.45663 5.48636 5.51373 5.55208 5.62736 5.66527 5.71047 5.76656 5.77694 5.78463 5.91131 5.98511 6.00773 6.03870 6.04525 6.24010 6.32978 6.36635 6.52764 6.82123 6.86109 6.96047 7.24702 7.84322 8.19063 8.60961 8.85704 9.40655 10.13521 10.34363 11.64339 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008613 B = 0.005513 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.294077 B = 5077.933468 C = 7482.236225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -1.122 6.122 3 S 2.611 3.389 4 O -0.959 6.959 5 O -0.965 6.965 6 C -0.605 4.605 7 C -0.129 4.129 8 C 0.475 3.525 9 O -0.421 6.421 10 N -0.620 5.620 11 C 0.107 3.893 12 C -0.134 4.134 13 C -0.118 4.118 14 C -0.127 4.127 15 C 0.144 3.856 16 H 0.063 0.937 17 C 0.187 3.813 18 H 0.072 0.928 19 C -0.170 4.170 20 N -0.722 5.722 21 C -0.180 4.180 22 H 0.086 0.914 23 C -0.010 4.010 24 N -0.948 5.948 25 Si 0.872 3.128 26 H -0.289 1.289 27 H -0.296 1.296 28 H -0.284 1.284 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.416 0.584 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.040 0.960 46 H 0.061 0.939 47 H 0.039 0.961 48 H 0.353 0.647 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.315 2.908 -6.099 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.881 5.881 3 S 2.703 3.297 4 O -0.949 6.949 5 O -0.956 6.956 6 C -0.735 4.735 7 C -0.171 4.171 8 C 0.258 3.742 9 O -0.287 6.287 10 N -0.358 5.358 11 C -0.016 4.016 12 C -0.173 4.173 13 C -0.156 4.156 14 C -0.166 4.166 15 C 0.040 3.960 16 H 0.081 0.919 17 C 0.077 3.923 18 H 0.090 0.910 19 C -0.230 4.230 20 N -0.364 5.364 21 C -0.310 4.310 22 H 0.104 0.896 23 C -0.202 4.202 24 N -0.599 5.599 25 Si 0.704 3.296 26 H -0.217 1.217 27 H -0.223 1.223 28 H -0.210 1.210 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.249 0.751 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.059 0.941 46 H 0.080 0.920 47 H 0.058 0.942 48 H 0.185 0.815 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.178 2.798 -6.284 16.664 hybrid contribution -0.685 0.574 -0.552 1.050 sum 14.493 3.371 -6.836 16.376 Atomic orbital electron populations 1.21578 0.78261 1.04384 1.02616 1.55281 1.16221 1.24266 1.92300 1.04942 0.73563 0.74010 0.77152 1.93592 1.78750 1.72303 1.50267 1.93582 1.32962 1.81421 1.87593 1.30337 1.12853 1.07521 1.22834 1.21360 1.01210 0.94746 0.99822 1.20132 0.82473 0.82725 0.88885 1.91244 1.29438 1.59377 1.48677 1.47880 1.43588 1.20001 1.24338 1.21647 0.88839 0.98175 0.92983 1.21915 0.97296 1.00591 0.97472 1.21509 0.99107 0.98357 0.96632 1.21985 0.95837 1.00548 0.98257 1.21574 0.94495 0.95670 0.84252 0.91890 1.20408 0.86832 0.95810 0.89202 0.91006 1.22539 1.00192 1.00724 0.99532 1.42746 1.20420 1.32325 1.40888 1.18870 0.96749 1.02091 1.13316 0.89650 1.24489 0.97859 0.98240 0.99629 1.69682 1.13703 1.31690 1.44858 0.86727 0.77472 0.81435 0.83937 1.21674 1.22265 1.21029 0.91479 0.89946 0.91240 0.75075 0.83931 0.83563 0.88602 0.88500 0.90216 0.91858 0.91461 0.91152 0.91992 0.92011 0.90616 0.91441 0.94059 0.91960 0.94178 0.81498 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 11.03 59.84 0.66 1.51 16 2 N -1.12 -12.25 6.08 -16.64 -0.10 -12.35 16 3 S 2.61 34.01 5.46 -107.50 -0.59 33.43 16 4 O -0.96 -15.46 17.73 -57.54 -1.02 -16.48 16 5 O -0.97 -14.26 18.08 -57.54 -1.04 -15.30 16 6 C -0.61 -8.43 5.31 37.16 0.20 -8.23 16 7 C -0.13 -1.77 4.12 -27.88 -0.11 -1.88 16 8 C 0.48 8.04 7.36 -10.99 -0.08 7.96 16 9 O -0.42 -8.96 8.61 5.56 0.05 -8.92 16 10 N -0.62 -8.94 2.97 -165.22 -0.49 -9.43 16 11 C 0.11 1.12 6.32 -3.71 -0.02 1.10 16 12 C -0.13 -1.19 6.08 -26.61 -0.16 -1.35 16 13 C -0.12 -1.10 5.88 -26.69 -0.16 -1.26 16 14 C -0.13 -1.49 4.64 -26.61 -0.12 -1.61 16 15 C 0.14 2.16 2.58 -67.60 -0.17 1.99 16 16 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 17 C 0.19 3.55 1.78 -67.94 -0.12 3.43 16 18 H 0.07 1.52 6.47 -51.93 -0.34 1.19 16 19 C -0.17 -2.95 8.68 37.15 0.32 -2.63 16 20 N -0.72 -16.88 2.93 -53.43 -0.16 -17.03 16 21 C -0.18 -5.02 8.46 -15.06 -0.13 -5.15 16 22 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.95 -29.89 13.97 55.49 0.78 -29.12 16 25 Si 0.87 22.62 27.74 -169.99 -4.71 17.91 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 28 H -0.28 -7.05 6.52 56.52 0.37 -6.68 16 29 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16 32 H 0.42 3.61 8.92 -34.47 -0.31 3.31 16 33 H 0.14 1.90 8.10 -51.93 -0.42 1.48 16 34 H 0.15 2.33 7.73 -51.92 -0.40 1.93 16 35 H 0.10 1.18 8.12 -51.93 -0.42 0.76 16 36 H 0.10 1.04 7.45 -51.93 -0.39 0.65 16 37 H 0.08 0.71 5.96 -51.93 -0.31 0.40 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.84 6.84 -51.93 -0.36 0.48 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.06 1.24 7.97 -51.93 -0.41 0.83 16 47 H 0.04 0.58 6.86 -51.93 -0.36 0.22 16 48 H 0.35 8.40 5.60 -40.82 -0.23 8.17 16 49 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -37.64 387.49 -9.60 -47.24 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -8.15 Total: 10.74 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 0.00 Total: -6.51 kcal Atomic # 7 Polarization: -67.96 SS G_CDS: 0.03 Total: -67.94 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -2.01 Total: -40.70 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.91 kcal Atomic # 16 Polarization: 34.01 SS G_CDS: -0.59 Total: 33.43 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.64 -9.60 -47.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712997192.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.100 kcal (2) G-P(sol) polarization free energy of solvation -37.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds