Wall clock time and date at job start Wed Apr 1 2020 05:28:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 S 1.65600 * 119.99923 * 2 1
4 4 O 1.42105 * 104.27499 * 308.92401 * 3 2 1
5 5 O 1.42100 * 104.27774 * 181.07174 * 3 2 1
6 6 C 1.81395 * 104.45369 * 64.99844 * 3 2 1
7 7 C 1.53004 * 109.47373 * 180.02562 * 6 3 2
8 8 C 1.50696 * 109.46812 * 179.97438 * 7 6 3
9 9 O 1.21280 * 120.00644 * 359.97438 * 8 7 6
10 10 N 1.34778 * 119.99421 * 179.97438 * 8 7 6
11 11 C 1.46926 * 120.63393 * 354.27268 * 10 8 7
12 12 C 1.53195 * 108.77625 * 233.63068 * 11 10 8
13 13 C 1.53043 * 109.31227 * 305.36197 * 12 11 10
14 14 C 1.53041 * 109.53713 * 61.36660 * 13 12 11
15 15 C 1.46932 * 120.62883 * 174.29432 * 10 8 7
16 16 H 1.09000 * 109.58339 * 246.29998 * 15 10 8
17 17 C 1.52995 * 109.58846 * 6.58248 * 15 10 8
18 18 H 1.09004 * 109.47263 * 52.70998 * 17 15 10
19 19 C 1.52992 * 109.47274 * 172.71315 * 17 15 10
20 20 N 1.46499 * 109.47303 * 292.71562 * 17 15 10
21 21 C 1.36938 * 120.00294 * 162.43979 * 20 17 15
22 22 H 1.07999 * 119.99734 * 359.72167 * 21 20 17
23 23 C 1.38814 * 120.00147 * 179.72497 * 21 20 17
24 24 N 1.31615 * 119.99832 * 179.97438 * 23 21 20
25 25 Si 1.86802 * 119.99837 * 0.02562 * 23 21 20
26 26 H 1.48500 * 109.47296 * 89.99973 * 25 23 21
27 27 H 1.48502 * 109.46736 * 210.00170 * 25 23 21
28 28 H 1.48499 * 109.47283 * 329.99615 * 25 23 21
29 29 H 1.08999 * 109.46974 * 60.00557 * 1 2 3
30 30 H 1.08998 * 109.46959 * 180.02562 * 1 2 3
31 31 H 1.09004 * 109.47560 * 300.00451 * 1 2 3
32 32 H 0.96999 * 120.00396 * 179.97438 * 2 1 3
33 33 H 1.08997 * 109.47359 * 59.99443 * 6 3 2
34 34 H 1.09008 * 109.47051 * 299.99735 * 6 3 2
35 35 H 1.08996 * 109.47139 * 59.99714 * 7 6 3
36 36 H 1.09001 * 109.46487 * 299.99274 * 7 6 3
37 37 H 1.08996 * 109.58631 * 353.41748 * 11 10 8
38 38 H 1.09000 * 109.58509 * 113.69994 * 11 10 8
39 39 H 1.08998 * 109.49535 * 65.31335 * 12 11 10
40 40 H 1.08996 * 109.49351 * 185.41246 * 12 11 10
41 41 H 1.08994 * 109.46034 * 181.38319 * 13 12 11
42 42 H 1.08993 * 109.46169 * 301.34545 * 13 12 11
43 43 H 1.08996 * 109.50226 * 178.68344 * 14 13 12
44 44 H 1.09006 * 109.49938 * 58.58257 * 14 13 12
45 45 H 1.08999 * 109.47008 * 53.77208 * 19 17 15
46 46 H 1.09002 * 109.46996 * 173.76965 * 19 17 15
47 47 H 1.09004 * 109.47432 * 293.76551 * 19 17 15
48 48 H 0.97006 * 119.99847 * 342.16550 * 20 17 15
49 49 H 0.97003 * 119.99657 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 16 2.2929 1.4342 0.0000
4 8 1.7188 2.1702 -1.0714
5 8 3.6606 1.0492 -0.0258
6 6 1.8764 2.1974 1.5919
7 6 2.5889 3.5460 1.7130
8 6 2.2423 4.1803 3.0353
9 8 1.4982 3.6102 3.8049
10 7 2.7592 5.3812 3.3626
11 6 3.7579 6.0267 2.4997
12 6 4.9854 6.3804 3.3454
13 6 4.5481 7.2272 4.5429
14 6 3.5784 6.4228 5.4117
15 6 2.3350 6.0695 4.5895
16 1 1.7954 6.9802 4.3295
17 6 1.4250 5.1493 5.4054
18 1 1.9205 4.1905 5.5581
19 6 1.1321 5.7936 6.7618
20 7 0.1680 4.9396 4.6828
21 6 -0.6483 3.8925 5.0182
22 1 -0.3632 3.2186 5.8125
23 6 -1.8420 3.6972 4.3372
24 7 -2.6263 2.6905 4.6594
25 14 -2.3346 4.8624 2.9628
26 1 -1.8032 4.3574 1.6714
27 1 -3.8156 4.9445 2.8905
28 1 -1.7768 6.2117 3.2339
29 1 -0.3633 0.5137 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5139 0.8899
32 1 1.9500 -0.8400 0.0004
33 1 2.1956 1.5432 2.4032
34 1 0.7986 2.3499 1.6509
35 1 2.2692 4.2000 0.9018
36 1 3.6667 3.3939 1.6540
37 1 4.0484 5.3429 1.7022
38 1 3.3356 6.9339 2.0675
39 1 5.4585 5.4650 3.7005
40 1 5.6938 6.9454 2.7397
41 1 5.4227 7.5009 5.1328
42 1 4.0529 8.1307 4.1872
43 1 3.2856 7.0178 6.2767
44 1 4.0649 5.5068 5.7474
45 1 0.7382 6.7985 6.6092
46 1 0.3975 5.1931 7.2983
47 1 2.0518 5.8484 7.3443
48 1 -0.0880 5.5449 3.9692
49 1 -3.4606 2.5543 4.1837
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001712997192.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:28:40
Heat of formation + Delta-G solvation = -52.338683 kcal
Electronic energy + Delta-G solvation = -31394.000232 eV
Core-core repulsion = 27292.494733 eV
Total energy + Delta-G solvation = -4101.505499 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.171 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-40.32494 -37.19150 -37.10860 -35.98466 -35.60827 -34.99928 -33.00412 -32.46808
-32.17490 -30.28328 -28.24507 -26.02857 -25.98144 -24.30898 -24.01196 -22.40887
-20.73442 -20.09199 -19.41280 -18.96675 -17.89887 -17.26613 -16.87100 -16.35515
-15.87961 -15.70388 -15.37851 -14.89859 -14.70474 -14.42087 -14.12886 -14.00395
-13.82823 -13.59374 -13.27845 -13.02360 -12.85291 -12.71758 -12.42910 -12.35685
-12.31874 -12.15569 -12.11371 -12.01274 -11.65182 -11.48199 -11.45317 -11.41875
-11.02766 -10.94720 -10.80687 -10.76676 -10.71778 -10.47326 -10.15894 -9.86877
-9.58691 -9.40029 -8.77888 -8.41561 -8.12119 -6.83510 -5.56001 -2.83834
0.26160 2.68680 3.23210 3.27206 3.42379 3.46037 3.52074 3.74112
4.25841 4.50676 4.66283 4.74150 4.75856 4.80046 4.91895 4.97503
5.01042 5.07788 5.23976 5.32617 5.45663 5.48636 5.51373 5.55208
5.62736 5.66527 5.71047 5.76656 5.77694 5.78463 5.91131 5.98511
6.00773 6.03870 6.04525 6.24010 6.32978 6.36635 6.52764 6.82123
6.86109 6.96047 7.24702 7.84322 8.19063 8.60961 8.85704 9.40655
10.13521 10.34363 11.64339
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.008613 B = 0.005513 C = 0.003741
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3250.294077 B = 5077.933468 C = 7482.236225
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.078 3.922
2 N -1.122 6.122
3 S 2.611 3.389
4 O -0.959 6.959
5 O -0.965 6.965
6 C -0.605 4.605
7 C -0.129 4.129
8 C 0.475 3.525
9 O -0.421 6.421
10 N -0.620 5.620
11 C 0.107 3.893
12 C -0.134 4.134
13 C -0.118 4.118
14 C -0.127 4.127
15 C 0.144 3.856
16 H 0.063 0.937
17 C 0.187 3.813
18 H 0.072 0.928
19 C -0.170 4.170
20 N -0.722 5.722
21 C -0.180 4.180
22 H 0.086 0.914
23 C -0.010 4.010
24 N -0.948 5.948
25 Si 0.872 3.128
26 H -0.289 1.289
27 H -0.296 1.296
28 H -0.284 1.284
29 H 0.067 0.933
30 H 0.082 0.918
31 H 0.069 0.931
32 H 0.416 0.584
33 H 0.142 0.858
34 H 0.146 0.854
35 H 0.096 0.904
36 H 0.097 0.903
37 H 0.079 0.921
38 H 0.063 0.937
39 H 0.067 0.933
40 H 0.070 0.930
41 H 0.061 0.939
42 H 0.061 0.939
43 H 0.075 0.925
44 H 0.067 0.933
45 H 0.040 0.960
46 H 0.061 0.939
47 H 0.039 0.961
48 H 0.353 0.647
49 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.315 2.908 -6.099 16.739
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 N -0.881 5.881
3 S 2.703 3.297
4 O -0.949 6.949
5 O -0.956 6.956
6 C -0.735 4.735
7 C -0.171 4.171
8 C 0.258 3.742
9 O -0.287 6.287
10 N -0.358 5.358
11 C -0.016 4.016
12 C -0.173 4.173
13 C -0.156 4.156
14 C -0.166 4.166
15 C 0.040 3.960
16 H 0.081 0.919
17 C 0.077 3.923
18 H 0.090 0.910
19 C -0.230 4.230
20 N -0.364 5.364
21 C -0.310 4.310
22 H 0.104 0.896
23 C -0.202 4.202
24 N -0.599 5.599
25 Si 0.704 3.296
26 H -0.217 1.217
27 H -0.223 1.223
28 H -0.210 1.210
29 H 0.085 0.915
30 H 0.101 0.899
31 H 0.088 0.912
32 H 0.249 0.751
33 H 0.161 0.839
34 H 0.164 0.836
35 H 0.114 0.886
36 H 0.115 0.885
37 H 0.098 0.902
38 H 0.081 0.919
39 H 0.085 0.915
40 H 0.088 0.912
41 H 0.080 0.920
42 H 0.080 0.920
43 H 0.094 0.906
44 H 0.086 0.914
45 H 0.059 0.941
46 H 0.080 0.920
47 H 0.058 0.942
48 H 0.185 0.815
49 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 15.178 2.798 -6.284 16.664
hybrid contribution -0.685 0.574 -0.552 1.050
sum 14.493 3.371 -6.836 16.376
Atomic orbital electron populations
1.21578 0.78261 1.04384 1.02616 1.55281 1.16221 1.24266 1.92300
1.04942 0.73563 0.74010 0.77152 1.93592 1.78750 1.72303 1.50267
1.93582 1.32962 1.81421 1.87593 1.30337 1.12853 1.07521 1.22834
1.21360 1.01210 0.94746 0.99822 1.20132 0.82473 0.82725 0.88885
1.91244 1.29438 1.59377 1.48677 1.47880 1.43588 1.20001 1.24338
1.21647 0.88839 0.98175 0.92983 1.21915 0.97296 1.00591 0.97472
1.21509 0.99107 0.98357 0.96632 1.21985 0.95837 1.00548 0.98257
1.21574 0.94495 0.95670 0.84252 0.91890 1.20408 0.86832 0.95810
0.89202 0.91006 1.22539 1.00192 1.00724 0.99532 1.42746 1.20420
1.32325 1.40888 1.18870 0.96749 1.02091 1.13316 0.89650 1.24489
0.97859 0.98240 0.99629 1.69682 1.13703 1.31690 1.44858 0.86727
0.77472 0.81435 0.83937 1.21674 1.22265 1.21029 0.91479 0.89946
0.91240 0.75075 0.83931 0.83563 0.88602 0.88500 0.90216 0.91858
0.91461 0.91152 0.91992 0.92011 0.90616 0.91441 0.94059 0.91960
0.94178 0.81498 0.93718
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.85 11.03 59.84 0.66 1.51 16
2 N -1.12 -12.25 6.08 -16.64 -0.10 -12.35 16
3 S 2.61 34.01 5.46 -107.50 -0.59 33.43 16
4 O -0.96 -15.46 17.73 -57.54 -1.02 -16.48 16
5 O -0.97 -14.26 18.08 -57.54 -1.04 -15.30 16
6 C -0.61 -8.43 5.31 37.16 0.20 -8.23 16
7 C -0.13 -1.77 4.12 -27.88 -0.11 -1.88 16
8 C 0.48 8.04 7.36 -10.99 -0.08 7.96 16
9 O -0.42 -8.96 8.61 5.56 0.05 -8.92 16
10 N -0.62 -8.94 2.97 -165.22 -0.49 -9.43 16
11 C 0.11 1.12 6.32 -3.71 -0.02 1.10 16
12 C -0.13 -1.19 6.08 -26.61 -0.16 -1.35 16
13 C -0.12 -1.10 5.88 -26.69 -0.16 -1.26 16
14 C -0.13 -1.49 4.64 -26.61 -0.12 -1.61 16
15 C 0.14 2.16 2.58 -67.60 -0.17 1.99 16
16 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
17 C 0.19 3.55 1.78 -67.94 -0.12 3.43 16
18 H 0.07 1.52 6.47 -51.93 -0.34 1.19 16
19 C -0.17 -2.95 8.68 37.15 0.32 -2.63 16
20 N -0.72 -16.88 2.93 -53.43 -0.16 -17.03 16
21 C -0.18 -5.02 8.46 -15.06 -0.13 -5.15 16
22 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16
23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16
24 N -0.95 -29.89 13.97 55.49 0.78 -29.12 16
25 Si 0.87 22.62 27.74 -169.99 -4.71 17.91 16
26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16
27 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16
28 H -0.28 -7.05 6.52 56.52 0.37 -6.68 16
29 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16
30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16
31 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16
32 H 0.42 3.61 8.92 -34.47 -0.31 3.31 16
33 H 0.14 1.90 8.10 -51.93 -0.42 1.48 16
34 H 0.15 2.33 7.73 -51.92 -0.40 1.93 16
35 H 0.10 1.18 8.12 -51.93 -0.42 0.76 16
36 H 0.10 1.04 7.45 -51.93 -0.39 0.65 16
37 H 0.08 0.71 5.96 -51.93 -0.31 0.40 16
38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
43 H 0.08 0.84 6.84 -51.93 -0.36 0.48 16
44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
45 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16
46 H 0.06 1.24 7.97 -51.93 -0.41 0.83 16
47 H 0.04 0.58 6.86 -51.93 -0.36 0.22 16
48 H 0.35 8.40 5.60 -40.82 -0.23 8.17 16
49 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16
LS Contribution 387.49 15.07 5.84 5.84
Total: -1.00 -37.64 387.49 -9.60 -47.24
By element:
Atomic # 1 Polarization: 18.90 SS G_CDS: -8.15 Total: 10.74 kcal
Atomic # 6 Polarization: -6.52 SS G_CDS: 0.00 Total: -6.51 kcal
Atomic # 7 Polarization: -67.96 SS G_CDS: 0.03 Total: -67.94 kcal
Atomic # 8 Polarization: -38.69 SS G_CDS: -2.01 Total: -40.70 kcal
Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.91 kcal
Atomic # 16 Polarization: 34.01 SS G_CDS: -0.59 Total: 33.43 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -37.64 -9.60 -47.24 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001712997192.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.100 kcal
(2) G-P(sol) polarization free energy of solvation -37.639 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.738 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.239 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds