Wall clock time and date at job start Wed Apr 1 2020 05:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 S 1.65600 * 119.99923 * 2 1 4 4 O 1.42105 * 104.27499 * 308.92401 * 3 2 1 5 5 O 1.42100 * 104.27774 * 181.07174 * 3 2 1 6 6 C 1.81395 * 104.45369 * 64.99844 * 3 2 1 7 7 C 1.53004 * 109.47373 * 180.02562 * 6 3 2 8 8 C 1.50696 * 109.46812 * 179.97438 * 7 6 3 9 9 O 1.21280 * 120.00644 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99421 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63393 * 354.27268 * 10 8 7 12 12 C 1.53195 * 108.77625 * 233.63068 * 11 10 8 13 13 C 1.53043 * 109.31227 * 305.36197 * 12 11 10 14 14 C 1.53041 * 109.53713 * 61.36660 * 13 12 11 15 15 C 1.46932 * 120.62883 * 174.29432 * 10 8 7 16 16 H 1.09000 * 109.58339 * 246.29998 * 15 10 8 17 17 C 1.52995 * 109.58846 * 6.58248 * 15 10 8 18 18 H 1.09004 * 109.47263 * 52.70998 * 17 15 10 19 19 C 1.52992 * 109.47274 * 172.71315 * 17 15 10 20 20 N 1.46499 * 109.47303 * 292.71562 * 17 15 10 21 21 C 1.36938 * 120.00294 * 162.43979 * 20 17 15 22 22 H 1.07999 * 119.99734 * 359.72167 * 21 20 17 23 23 C 1.38814 * 120.00147 * 179.72497 * 21 20 17 24 24 N 1.31615 * 119.99832 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99837 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47296 * 89.99973 * 25 23 21 27 27 H 1.48502 * 109.46736 * 210.00170 * 25 23 21 28 28 H 1.48499 * 109.47283 * 329.99615 * 25 23 21 29 29 H 1.08999 * 109.46974 * 60.00557 * 1 2 3 30 30 H 1.08998 * 109.46959 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47560 * 300.00451 * 1 2 3 32 32 H 0.96999 * 120.00396 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47359 * 59.99443 * 6 3 2 34 34 H 1.09008 * 109.47051 * 299.99735 * 6 3 2 35 35 H 1.08996 * 109.47139 * 59.99714 * 7 6 3 36 36 H 1.09001 * 109.46487 * 299.99274 * 7 6 3 37 37 H 1.08996 * 109.58631 * 353.41748 * 11 10 8 38 38 H 1.09000 * 109.58509 * 113.69994 * 11 10 8 39 39 H 1.08998 * 109.49535 * 65.31335 * 12 11 10 40 40 H 1.08996 * 109.49351 * 185.41246 * 12 11 10 41 41 H 1.08994 * 109.46034 * 181.38319 * 13 12 11 42 42 H 1.08993 * 109.46169 * 301.34545 * 13 12 11 43 43 H 1.08996 * 109.50226 * 178.68344 * 14 13 12 44 44 H 1.09006 * 109.49938 * 58.58257 * 14 13 12 45 45 H 1.08999 * 109.47008 * 53.77208 * 19 17 15 46 46 H 1.09002 * 109.46996 * 173.76965 * 19 17 15 47 47 H 1.09004 * 109.47432 * 293.76551 * 19 17 15 48 48 H 0.97006 * 119.99847 * 342.16550 * 20 17 15 49 49 H 0.97003 * 119.99657 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7188 2.1702 -1.0714 5 8 3.6606 1.0492 -0.0258 6 6 1.8764 2.1974 1.5919 7 6 2.5889 3.5460 1.7130 8 6 2.2423 4.1803 3.0353 9 8 1.4982 3.6102 3.8049 10 7 2.7592 5.3812 3.3626 11 6 3.7579 6.0267 2.4997 12 6 4.9854 6.3804 3.3454 13 6 4.5481 7.2272 4.5429 14 6 3.5784 6.4228 5.4117 15 6 2.3350 6.0695 4.5895 16 1 1.7954 6.9802 4.3295 17 6 1.4250 5.1493 5.4054 18 1 1.9205 4.1905 5.5581 19 6 1.1321 5.7936 6.7618 20 7 0.1680 4.9396 4.6828 21 6 -0.6483 3.8925 5.0182 22 1 -0.3632 3.2186 5.8125 23 6 -1.8420 3.6972 4.3372 24 7 -2.6263 2.6905 4.6594 25 14 -2.3346 4.8624 2.9628 26 1 -1.8032 4.3574 1.6714 27 1 -3.8156 4.9445 2.8905 28 1 -1.7768 6.2117 3.2339 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.9500 -0.8400 0.0004 33 1 2.1956 1.5432 2.4032 34 1 0.7986 2.3499 1.6509 35 1 2.2692 4.2000 0.9018 36 1 3.6667 3.3939 1.6540 37 1 4.0484 5.3429 1.7022 38 1 3.3356 6.9339 2.0675 39 1 5.4585 5.4650 3.7005 40 1 5.6938 6.9454 2.7397 41 1 5.4227 7.5009 5.1328 42 1 4.0529 8.1307 4.1872 43 1 3.2856 7.0178 6.2767 44 1 4.0649 5.5068 5.7474 45 1 0.7382 6.7985 6.6092 46 1 0.3975 5.1931 7.2983 47 1 2.0518 5.8484 7.3443 48 1 -0.0880 5.5449 3.9692 49 1 -3.4606 2.5543 4.1837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712997192.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:39 Heat of formation + Delta-G solvation = -82.271937 kcal Electronic energy + Delta-G solvation = -31395.298235 eV Core-core repulsion = 27292.494733 eV Total energy + Delta-G solvation = -4102.803502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.171 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.55332 -38.34166 -38.27340 -37.18589 -37.12891 -35.94758 -34.47759 -33.81346 -33.46338 -31.94425 -29.66775 -27.19791 -26.90172 -25.82619 -25.14855 -23.85509 -21.83095 -21.49198 -20.51492 -20.22641 -19.32614 -18.72339 -18.07208 -17.45726 -16.98457 -16.90139 -16.66607 -16.41892 -15.90595 -15.82116 -15.35556 -15.06152 -14.89532 -14.67178 -14.63216 -14.35716 -14.22975 -13.86678 -13.84877 -13.83151 -13.60415 -13.31636 -13.29936 -13.20556 -13.11772 -12.89192 -12.63173 -12.59898 -12.45204 -12.35128 -12.08225 -11.93980 -11.86992 -11.70315 -11.66791 -11.40194 -11.19244 -10.81122 -10.55104 -9.81901 -9.47056 -8.75806 -7.83296 -5.06138 -0.82713 1.33068 1.35485 1.42557 1.67060 1.97911 2.15923 2.57079 2.65819 3.16142 3.38893 3.48136 3.60919 3.68097 3.81231 3.94146 4.03283 4.12754 4.14304 4.26147 4.29544 4.37228 4.41493 4.49860 4.56954 4.63705 4.72583 4.77744 4.78992 4.85822 4.87894 4.93971 4.96967 5.02667 5.07691 5.16564 5.21790 5.28713 5.42044 5.48314 5.57638 5.90094 5.95692 6.06868 6.37894 6.66978 7.26106 7.60418 8.03269 8.22586 9.41083 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008613 B = 0.005513 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.294077 B = 5077.933468 C = 7482.236225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.114 6.114 3 S 2.643 3.357 4 O -0.986 6.986 5 O -0.978 6.978 6 C -0.606 4.606 7 C -0.135 4.135 8 C 0.470 3.530 9 O -0.483 6.483 10 N -0.618 5.618 11 C 0.096 3.904 12 C -0.130 4.130 13 C -0.114 4.114 14 C -0.121 4.121 15 C 0.147 3.853 16 H 0.066 0.934 17 C 0.183 3.817 18 H 0.045 0.955 19 C -0.160 4.160 20 N -0.719 5.719 21 C -0.144 4.144 22 H 0.043 0.957 23 C -0.079 4.079 24 N -0.998 5.998 25 Si 0.936 3.064 26 H -0.284 1.284 27 H -0.305 1.305 28 H -0.263 1.263 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.428 0.572 33 H 0.142 0.858 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.026 0.974 47 H 0.073 0.927 48 H 0.352 0.648 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.080 5.195 -7.623 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.876 5.876 3 S 2.735 3.265 4 O -0.976 6.976 5 O -0.968 6.968 6 C -0.736 4.736 7 C -0.177 4.177 8 C 0.254 3.746 9 O -0.354 6.354 10 N -0.355 5.355 11 C -0.026 4.026 12 C -0.168 4.168 13 C -0.152 4.152 14 C -0.160 4.160 15 C 0.043 3.957 16 H 0.084 0.916 17 C 0.076 3.924 18 H 0.063 0.937 19 C -0.220 4.220 20 N -0.361 5.361 21 C -0.276 4.276 22 H 0.061 0.939 23 C -0.267 4.267 24 N -0.654 5.654 25 Si 0.767 3.233 26 H -0.211 1.211 27 H -0.232 1.232 28 H -0.189 1.189 29 H 0.084 0.916 30 H 0.128 0.872 31 H 0.072 0.928 32 H 0.264 0.736 33 H 0.160 0.840 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.148 0.852 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.045 0.955 47 H 0.092 0.908 48 H 0.185 0.815 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 18.046 5.159 -7.809 20.328 hybrid contribution -1.402 -0.190 -0.003 1.415 sum 16.644 4.969 -7.812 19.046 Atomic orbital electron populations 1.21698 0.77975 1.06064 1.01810 1.55057 1.16379 1.24249 1.91909 1.03921 0.72827 0.73747 0.75992 1.93556 1.79269 1.73402 1.51347 1.93556 1.33955 1.81657 1.87617 1.30344 1.11324 1.08292 1.23609 1.21516 1.03278 0.94462 0.98431 1.20725 0.81509 0.82941 0.89377 1.91224 1.32409 1.61300 1.50455 1.48031 1.43709 1.19298 1.24467 1.22030 0.88526 0.98867 0.93153 1.21912 0.96807 1.00714 0.97381 1.21506 0.99046 0.98089 0.96541 1.21939 0.94670 1.00816 0.98542 1.21476 0.95330 0.94269 0.84646 0.91595 1.20501 0.85673 0.95916 0.90352 0.93725 1.22400 1.00865 1.00225 0.98540 1.42668 1.21351 1.30879 1.41197 1.18655 0.96567 1.01612 1.10755 0.93929 1.25107 0.98403 1.00431 1.02768 1.69866 1.14351 1.34295 1.46865 0.85660 0.76353 0.80269 0.81040 1.21145 1.23210 1.18889 0.91584 0.87151 0.92795 0.73590 0.84001 0.86050 0.86891 0.85180 0.88497 0.90475 0.92001 0.88340 0.90135 0.91219 0.89662 0.92290 0.92947 0.95500 0.90829 0.81532 0.94330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.51 11.03 127.77 1.41 2.92 16 2 N -1.11 -23.46 6.08 -206.54 -1.25 -24.71 16 3 S 2.64 66.48 5.46 -56.49 -0.31 66.17 16 4 O -0.99 -30.78 17.73 -127.65 -2.26 -33.04 16 5 O -0.98 -27.29 18.08 -127.65 -2.31 -29.60 16 6 C -0.61 -16.99 5.31 71.98 0.38 -16.61 16 7 C -0.14 -3.51 4.12 29.85 0.12 -3.39 16 8 C 0.47 15.65 7.36 87.66 0.65 16.29 16 9 O -0.48 -21.24 8.61 -3.03 -0.03 -21.26 16 10 N -0.62 -16.59 2.97 -795.02 -2.36 -18.95 16 11 C 0.10 1.65 6.32 86.36 0.55 2.19 16 12 C -0.13 -1.74 6.08 30.67 0.19 -1.55 16 13 C -0.11 -1.63 5.88 30.62 0.18 -1.45 16 14 C -0.12 -2.48 4.64 30.67 0.14 -2.33 16 15 C 0.15 4.14 2.58 44.97 0.12 4.26 16 16 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 17 C 0.18 7.02 1.78 44.99 0.08 7.10 16 18 H 0.04 1.98 6.47 -2.38 -0.02 1.96 16 19 C -0.16 -5.54 8.68 71.98 0.62 -4.91 16 20 N -0.72 -34.25 2.93 -322.96 -0.95 -35.19 16 21 C -0.14 -8.42 8.46 84.03 0.71 -7.71 16 22 H 0.04 2.82 8.06 -2.91 -0.02 2.80 16 23 C -0.08 -4.80 5.50 84.86 0.47 -4.34 16 24 N -1.00 -66.07 13.97 21.65 0.30 -65.77 16 25 Si 0.94 47.94 27.74 68.60 1.90 49.85 16 26 H -0.28 -14.18 7.11 99.48 0.71 -13.48 16 27 H -0.30 -15.94 7.11 99.48 0.71 -15.23 16 28 H -0.26 -12.41 6.52 99.48 0.65 -11.76 16 29 H 0.07 1.43 8.04 -2.39 -0.02 1.41 16 30 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.33 7.73 -2.39 -0.02 1.31 16 32 H 0.43 6.88 8.92 -96.75 -0.86 6.01 16 33 H 0.14 3.92 8.10 -2.39 -0.02 3.90 16 34 H 0.12 4.07 7.73 -2.39 -0.02 4.05 16 35 H 0.11 2.54 8.12 -2.39 -0.02 2.52 16 36 H 0.13 2.44 7.45 -2.39 -0.02 2.43 16 37 H 0.10 1.33 5.96 -2.39 -0.01 1.32 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 43 H 0.08 1.59 6.84 -2.39 -0.02 1.57 16 44 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.03 1.09 7.97 -2.39 -0.02 1.07 16 47 H 0.07 2.02 6.86 -2.38 -0.02 2.00 16 48 H 0.35 16.65 5.60 -92.70 -0.52 16.13 16 49 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -85.69 387.49 -2.13 -87.83 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.48 Total: 34.20 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 5.61 Total: -9.53 kcal Atomic # 7 Polarization: -140.36 SS G_CDS: -4.26 Total: -144.62 kcal Atomic # 8 Polarization: -79.30 SS G_CDS: -4.60 Total: -83.90 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.90 Total: 49.85 kcal Atomic # 16 Polarization: 66.48 SS G_CDS: -0.31 Total: 66.17 kcal Total: -85.69 -2.13 -87.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712997192.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.556 kcal (2) G-P(sol) polarization free energy of solvation -85.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds